Bug#1064135: Help needed to pass -fsigned-char to r-cran-bigmemory

2025-05-12 Thread Dirk Eddelbuettel
On 12 May 2025 at 12:06, Charles Plessy wrote: | Thanks a lot Dirk for putting me in the right direction! | | So I persevered a bit more with src/Makevars and ran R CMD INSTALL from | outside Debian's build system first, which leads me to figure out that | src/Makevars was unconditionally over

Bug#1064135: Help needed to pass -fsigned-char to r-cran-bigmemory

2025-05-11 Thread Dirk Eddelbuettel
On 12 May 2025 at 09:43, Charles Plessy wrote: | - A src/Makevars file containing +CXXFLAGS = -fsigned-char a) maybe use += instead of = ? b) maybe use PKG_CXXFLAGS instead as CXXFLAGS get overridden ? b) should work but it's late-ish on a sunday eve here ... This should be fixable. I'll try

Bug#1104271: sm has an undeclared file conflict on /usr/share/man/man1/sm.1.gz

2025-04-29 Thread Dirk Eddelbuettel
On 28 April 2025 at 16:09, Helmut Grohne wrote: | Hi Dirk, | | On Mon, Apr 28, 2025 at 08:46:12AM -0500, Dirk Eddelbuettel wrote: | > On 28 April 2025 at 06:00, Helmut Grohne wrote: | > | Package: sm | > | Version: 0.29-1 | | > You once again filed against the wrong (source) pac

Bug#1104271: sm has an undeclared file conflict on /usr/share/man/man1/sm.1.gz

2025-04-28 Thread Dirk Eddelbuettel
On 28 April 2025 at 06:00, Helmut Grohne wrote: | Package: sm | Version: 0.29-1 | Severity: serious | User: debian...@lists.debian.org | Usertags: fileconflict | Control: affects -1 + inn2 | | sm has an undeclared file conflict. This may result in an unpack error | from dpkg. | | The file /usr/

Bug#1103373: rjava: FTBFS in testing/armel: configure: error: One or more Java configuration variables are not set.

2025-04-17 Thread Dirk Eddelbuettel
On 17 April 2025 at 17:55, Lucas Nussbaum wrote: | On 17/04/25 at 10:40 -0500, Dirk Eddelbuettel wrote: | > | > On 17 April 2025 at 09:33, Dirk Eddelbuettel wrote: | > | | > | On 17 April 2025 at 15:43, Lucas Nussbaum wrote: | > | | On 17/04/25 at 08:27 -0500, Dirk Edd

Bug#1103373: rjava: FTBFS in testing/armel: configure: error: One or more Java configuration variables are not set.

2025-04-17 Thread Dirk Eddelbuettel
On 17 April 2025 at 09:33, Dirk Eddelbuettel wrote: | | On 17 April 2025 at 15:43, Lucas Nussbaum wrote: | | On 17/04/25 at 08:27 -0500, Dirk Eddelbuettel wrote: | | > Coincidentally got a patch via the BTS to fix how R (ie r-base-core) | | > configures Java on loong64, but this may he

Bug#1103373: rjava: FTBFS in testing/armel: configure: error: One or more Java configuration variables are not set.

2025-04-17 Thread Dirk Eddelbuettel
On 17 April 2025 at 15:43, Lucas Nussbaum wrote: | On 17/04/25 at 08:27 -0500, Dirk Eddelbuettel wrote: | > Coincidentally got a patch via the BTS to fix how R (ie r-base-core) | > configures Java on loong64, but this may help the others too. [1] | > | > The new r-base package is

Bug#1103373: rjava: FTBFS in testing/armel: configure: error: One or more Java configuration variables are not set.

2025-04-17 Thread Dirk Eddelbuettel
On 16 April 2025 at 15:35, Dirk Eddelbuettel wrote: | | On 16 April 2025 at 22:13, Lucas Nussbaum wrote: | | On 16/04/25 at 14:51 -0500, Dirk Eddelbuettel wrote: | | > | | > On 16 April 2025 at 21:27, Lucas Nussbaum wrote: | | > | Source: rjava | | > | Version: 1.0-11-1 | |

Bug#1103373: rjava: FTBFS in testing/armel: configure: error: One or more Java configuration variables are not set.

2025-04-16 Thread Dirk Eddelbuettel
On 16 April 2025 at 22:13, Lucas Nussbaum wrote: | On 16/04/25 at 14:51 -0500, Dirk Eddelbuettel wrote: | > | > On 16 April 2025 at 21:27, Lucas Nussbaum wrote: | > | Source: rjava | > | Version: 1.0-11-1 | > | Severity: serious | > | Justification: FTBFS | > | Tags: trixie

Bug#1103373: rjava: FTBFS in testing/armel: configure: error: One or more Java configuration variables are not set.

2025-04-16 Thread Dirk Eddelbuettel
Standards-Version: to current version -- Dirk Eddelbuettel Mon, 14 Apr 2025 20:59:33 -0500 Thanks, Dirk | | | Relevant part (hopefully): | > archiver: '/usr/lib/jvm/default-java/bin/jar' | > compiler: '/usr/lib/jvm/default-java/bin/javac' | > h

Bug#1102774: rpy2: FTBFS: /usr/bin/ld: cannot find -lzstd: No such file or directory

2025-04-15 Thread Dirk Eddelbuettel
On 12 April 2025 at 20:12, Dirk Eddelbuettel wrote: | | On 13 April 2025 at 02:10, Johannes Ranke wrote: | | For what it's worth, I needed to add libzstd-dev to the build dependencies of | | littler while backporting it to Debian bookworm (not for bullseye). Sorry, I | | have no deeper in

Bug#1103203: rjava: FTBFS: /usr/bin/ld: cannot find -lzstd: No such file or directory

2025-04-14 Thread Dirk Eddelbuettel
On 15 April 2025 at 00:19, Santiago Vila wrote: | Package: src:rjava | Version: 1.0-11-1 | Severity: serious | Tags: ftbfs trixie sid | | Dear maintainer: | | During a rebuild of all packages in unstable, your package failed to build: | | --

Bug#1102774: rpy2: FTBFS: /usr/bin/ld: cannot find -lzstd: No such file or directory

2025-04-12 Thread Dirk Eddelbuettel
On 13 April 2025 at 02:10, Johannes Ranke wrote: | For what it's worth, I needed to add libzstd-dev to the build dependencies of | littler while backporting it to Debian bookworm (not for bullseye). Sorry, I | have no deeper insight but that is what I experienced. | | | Could it be related to t

Bug#1102774: rpy2: FTBFS: /usr/bin/ld: cannot find -lzstd: No such file or directory

2025-04-12 Thread Dirk Eddelbuettel
On 12 April 2025 at 23:00, Santiago Vila wrote: | Hi. Thanks for fixing this so quickly! | | There is a little detail which I missed: | | Could it be the case that the right fix would be | to add a binary dependency on libzstd-dev to | one of the current build-dependencies? That is what I did.

Bug#1102774: rpy2: FTBFS: /usr/bin/ld: cannot find -lzstd: No such file or directory

2025-04-12 Thread Dirk Eddelbuettel
On 12 April 2025 at 16:21, Santiago Vila wrote: | Package: src:rpy2 | Version: 3.5.17-1 | Severity: serious | Tags: ftbfs trixie sid | | Dear maintainer: | | During a rebuild of all packages in unstable, your package failed to build: | | ---

Bug#1101114: inn2 and sm have an undeclared file conflict on /usr/share/man/man1/sm.1.gz

2025-04-04 Thread Dirk Eddelbuettel
On 23 March 2025 at 13:53, Helmut Grohne wrote: | Package: inn2,sm | Severity: serious | User: debian...@lists.debian.org | Usertags: fileconflict Maintainer of mistakenly addressed package here: for 'historical' reason, source package 'sm' is CRAN package 'r-cran-sm' as a binary. You likely me

Bug#1101386: src:lme4: fails to migrate to testing for too long

2025-04-04 Thread Dirk Eddelbuettel
On 26 March 2025 at 15:59, Dirk Eddelbuettel wrote: | | On 26 March 2025 at 21:37, Paul Gevers wrote: | | Source: lme4 | | Version: 1.1-35.5-1 | | Severity: serious | | Control: close -1 1.1-36-1 | | Tags: sid trixie | | User: release.debian@packages.debian.org | | Usertags: out-of-sync

Bug#1101386: src:lme4: fails to migrate to testing for too long

2025-03-26 Thread Dirk Eddelbuettel
On 26 March 2025 at 21:37, Paul Gevers wrote: | Source: lme4 | Version: 1.1-35.5-1 | Severity: serious | Control: close -1 1.1-36-1 | Tags: sid trixie | User: release.debian@packages.debian.org | Usertags: out-of-sync Hm, it so happens that there was a new upstream version 1.1-37 released ye

Bug#1101114: inn2 and sm have an undeclared file conflict on /usr/share/man/man1/sm.1.gz

2025-03-26 Thread Dirk Eddelbuettel
Hi Helmut, On 23 March 2025 at 19:57, Helmut Grohne wrote: | On Sun, Mar 23, 2025 at 11:03:07AM -0500, Dirk Eddelbuettel wrote: | > On 23 March 2025 at 13:53, Helmut Grohne wrote: | > | Package: inn2,sm | > | Severity: serious | > | User: debian...@lists.debian.org | > | Usertag

Bug#1101114: inn2 and sm have an undeclared file conflict on /usr/share/man/man1/sm.1.gz

2025-03-24 Thread Dirk Eddelbuettel
On 23 March 2025 at 21:42, Helmut Grohne wrote: | On Sun, Mar 23, 2025 at 02:28:48PM -0500, Dirk Eddelbuettel wrote: | > | In any case, I concur that the problem exists between sm built from | > | src:screen-message and inn2 built from src:inn2. | > | > Can you reassign accordingly

Bug#1093355: Re: Bug#1093355: quantlib-swig: FTBFS: error: ‘SampledCurve’ has not been declared in ‘QuantLib’

2025-01-17 Thread Dirk Eddelbuettel
On 18 January 2025 at 02:06, Santiago Vila wrote: | El 17/1/25 a las 20:30, Dirk Eddelbuettel escribió: | > Hm, build log are fine: | > | > https://buildd.debian.org/status/package.php?p=quantlib-swig | > | > What are you doing differently? | | Hi. Heraclitus once said "

Bug#1093355: quantlib-swig: FTBFS: error: ‘SampledCurve’ has not been declared in ‘QuantLib’

2025-01-17 Thread Dirk Eddelbuettel
This may be because quantlib itself is currently at the 1.37rc (in version 1.36.99) meaning quantlib and quantlib-swig are (briefly) out of sync. Once QuantLib gets released we will have proper 1.37.* versions of both. Dirk -- dirk.eddelbuettel.com | @eddelbuettel | e...@debian.org

Bug#1093355: quantlib-swig: FTBFS: error: ‘SampledCurve’ has not been declared in ‘QuantLib’

2025-01-17 Thread Dirk Eddelbuettel
Hm, build log are fine: https://buildd.debian.org/status/package.php?p=quantlib-swig What are you doing differently? Dirk -- dirk.eddelbuettel.com | @eddelbuettel | e...@debian.org

Bug#1088553: src:quantlib-swig: fails to migrate to testing for too long: FTBFS on mips64el

2025-01-05 Thread Dirk Eddelbuettel
Hi Paul, On 5 January 2025 at 21:59, Paul Gevers wrote: | On 05-01-2025 21:54, Dirk Eddelbuettel wrote: | > | Please note that generally we prefer not to have an explicit | > | architectures list in the Architecture field, it's considered better to | > | have the build which fail

Bug#1088553: src:quantlib-swig: fails to migrate to testing for too long: FTBFS on mips64el

2025-01-05 Thread Dirk Eddelbuettel
On 5 January 2025 at 21:35, Paul Gevers wrote: | Hi Dirk, | | On 05-01-2025 01:30, Dirk Eddelbuettel wrote: | > Can you remind me how I communicate with the release (or ftp ?) team that | > this simply no longer builds on mips64el? | | It's not about not building but that the existi

Bug#1088553: src:quantlib-swig: fails to migrate to testing for too long: FTBFS on mips64el

2025-01-04 Thread Dirk Eddelbuettel
Hi Paul, Attempted the following i) contacted upstream: no solution ii) contacted debian-mips: no reply iii) reactivated a setting in debian/rules which asks for 'lower resource use' builds on mips64el: no luck, build still failed (that was -2) iv) switched to an explicit arch

Bug#1088553: Source package quantlib-swig now fails on mips64el

2024-12-28 Thread Dirk Eddelbuettel
Hi mips folks, I could need a hand with #108853 [1] raised by Paul in November (and CC'ed here) and which has now lead to quantlib-swig being off testing. In essence, we no longer build on mips64el and it is unclear why (see eg [2]). This has affected the last two (upstream) release, we built

Bug#1086312: rmpi: FTBFS: configure: error: Cannot find orted. Rmpi needs orted to run.

2024-10-29 Thread Dirk Eddelbuettel
Hi Santiago, On 29 October 2024 at 21:05, Santiago Vila wrote: | Package: src:rmpi | Version: 0.7-2.1-1 | Severity: serious | Tags: ftbfs | | Dear maintainer: | | During a rebuild of all packages in unstable, your package failed to build: | | -

Bug#1086312: rmpi: FTBFS: configure: error: Cannot find orted. Rmpi needs orted to run.

2024-10-29 Thread Dirk Eddelbuettel
On 29 October 2024 at 15:40, Dirk Eddelbuettel wrote: | | Hi Santiago, | | On 29 October 2024 at 21:05, Santiago Vila wrote: | | Package: src:rmpi | | Version: 0.7-2.1-1 | | Severity: serious | | Tags: ftbfs | | | | Dear maintainer: | | | | During a rebuild of all packages in unstable, your

Bug#1080988: src:r-cran-pbkrtest: fails to migrate to testing for too long: new Build-Depends not ready to migrate

2024-09-06 Thread Dirk Eddelbuettel
Hi Paul, On 6 September 2024 at 17:24, Paul Gevers wrote: | Hi Dirk, | | On 06-09-2024 15:19, Dirk Eddelbuettel wrote: | > If you think there is anything I could or should do let me know. I packaged | > the newest upstream version, and looked after its dependencies. | | You could che

Bug#1080988: src:r-cran-pbkrtest: fails to migrate to testing for too long: new Build-Depends not ready to migrate

2024-09-06 Thread Dirk Eddelbuettel
On 6 September 2024 at 14:36, Paul Gevers wrote: | Source: r-cran-pbkrtest | Version: 0.5.2-2 | Severity: serious | Control: close -1 0.5.3-1 | Tags: sid trixie | User: release.debian@packages.debian.org | Usertags: out-of-sync | | Dear maintainer(s), | | The Release Team considers packages

Bug#1079526: sprng: lost gmp symbols cause ftbfs in tree-puzzle

2024-08-26 Thread Dirk Eddelbuettel
On 24 August 2024 at 11:45, Étienne Mollier wrote: | Source: sprng | Version: 2.0a-15 | Severity: serious | Tags: patch upstream | Justification: causes reverse dependency to ftbfs | Control: affects -1 tree-puzzle | Control: block 1075584 by -1 | | Dear Maintainer, | | dh_shlibdeps reports mul

Bug#1077743: sprng: FTBFS in trixie, has undeclared build-depends on gcc-14

2024-08-01 Thread Dirk Eddelbuettel
On 1 August 2024 at 13:11, Santiago Vila wrote: | Package: src:sprng | Version: 2.0a-14 | Severity: serious | Tags: ftbfs patch | | Dear maintainer: | | The current package FTBFS in trixie: | | https://tests.reproducible-builds.org/debian/rbuild/trixie/amd64/sprng_2.0a-14.rbuild.log.gz | | m

Bug#1074993: ggobi: ftbfs with GCC-14

2024-07-29 Thread Dirk Eddelbuettel
Now fixed in 2.1.12-1, but I forgot to add a 'Closes: ...' in time. Dirk -- dirk.eddelbuettel.com | @eddelbuettel | e...@debian.org

Bug#1077355: gretl: FTBFS: ../lib/src/interact.c:2131:19: error: implicit declaration of function 'try_http' [-Wimplicit-function-declaration]

2024-07-28 Thread Dirk Eddelbuettel
On 28 July 2024 at 20:52, Cottrell, Allin wrote: | On Sun, Jul 28, 2024 at 3:33 PM Dirk Eddelbuettel wrote: | > | > | > On 28 July 2024 at 15:11, Cottrell, Allin wrote: | > | On Sun, Jul 28, 2024 at 1:29 PM Dirk Eddelbuettel wrote: | [...] | > | > | > ../lib/src/in

Bug#1077355: gretl: FTBFS: ../lib/src/interact.c:2131:19: error: implicit declaration of function 'try_http' [-Wimplicit-function-declaration]

2024-07-28 Thread Dirk Eddelbuettel
On 28 July 2024 at 15:11, Cottrell, Allin wrote: | On Sun, Jul 28, 2024 at 1:29 PM Dirk Eddelbuettel wrote: | > | > | > On 28 July 2024 at 18:27, Lucas Nussbaum wrote: | > | Source: gretl | > | Version: 2024b-1 | > | Severity: serious | > | Justification: FTBFS | >

Bug#1077355: gretl: FTBFS: ../lib/src/interact.c:2131:19: error: implicit declaration of function 'try_http' [-Wimplicit-function-declaration]

2024-07-28 Thread Dirk Eddelbuettel
On 28 July 2024 at 18:27, Lucas Nussbaum wrote: | Source: gretl | Version: 2024b-1 | Severity: serious | Justification: FTBFS | Tags: trixie sid ftbfs | User: lu...@debian.org | Usertags: ftbfs-20240727 ftbfs-trixie | | Hi, | | During a rebuild of all packages in sid, your package failed to bui

Bug#1076615: r-cran-metamix: autopkgtest regression with rmpi 0.7-2-2 (armel,armhf,i386)

2024-07-19 Thread Dirk Eddelbuettel
Source: r-cran-metamix Version: 0.3-2 Severity: serious Dear Maintainers, Your package r-cran-metamix is showing an autopkg regression with the updated rmpi (aka r-cran-rmpi) package I maintain, and is blocking it. Upstream at CRAN 32 bit operating systems are no longer checked (and one go furt

Bug#1075978: rmpi: FTBFS on 32 bit architectures: configure: error: "Cannot find mpi.h header file"

2024-07-09 Thread Dirk Eddelbuettel
On 9 July 2024 at 18:42, Adrian Bunk wrote: | On Tue, Jul 09, 2024 at 10:34:43AM -0500, Dirk Eddelbuettel wrote: | > | > Adrian, | | Hi Dirk, | | > Will the patch to configure.ac, with the build system as it is, ensure | > autoconf is called or should I do that manually and henc

Bug#1075978: rmpi: FTBFS on 32 bit architectures: configure: error: "Cannot find mpi.h header file"

2024-07-09 Thread Dirk Eddelbuettel
Adrian, Will the patch to configure.ac, with the build system as it is, ensure autoconf is called or should I do that manually and hence also patch configure? Dirk -- dirk.eddelbuettel.com | @eddelbuettel | e...@debian.org

Bug#1075978: rmpi: FTBFS on 32 bit architectures: configure: error: "Cannot find mpi.h header file"

2024-07-08 Thread Dirk Eddelbuettel
On 9 July 2024 at 04:10, Adrian Bunk wrote: | Control: tags -1 patch | | On Mon, Jul 08, 2024 at 03:30:17PM -0500, Dirk Eddelbuettel wrote: | > | > On 8 July 2024 at 22:09, Sebastian Ramacher wrote: | > | Source: rmpi | > | Version: 0.7-2-1 | > | Severity: serious |

Bug#1075978: rmpi: FTBFS on 32 bit architectures: configure: error: "Cannot find mpi.h header file"

2024-07-08 Thread Dirk Eddelbuettel
On 8 July 2024 at 22:09, Sebastian Ramacher wrote: | Source: rmpi | Version: 0.7-2-1 | Severity: serious | Tags: ftbfs | Justification: fails to build from source (but built successfully in the past) | X-Debbugs-Cc: sramac...@debian.org | | https://buildd.debian.org/status/fetch.php?pkg=rmpi&ar

Bug#1071523: r-cran-spatstat.geom: autopkgtest regression in testing

2024-07-02 Thread Dirk Eddelbuettel
On 3 July 2024 at 07:18, Andreas Tille wrote: | Am Tue, Jul 02, 2024 at 09:32:43PM + schrieb Graham Inggs: | > > We did not implemented any hooks to realise this yet. | > | > Wouldn't removing the following line from debian/control do it? | > | > Testsuite: autopkgtest-pkg-r | | Well, sure

Bug#1074529: r-cran-dimred: autopkgtest regression with r-base 4.4.1 (i386)

2024-06-30 Thread Dirk Eddelbuettel
On 30 June 2024 at 12:17, Graham Inggs wrote: | Source: r-cran-dimred | Version: 0.2.6-1 | Severity: serious | Tags: trixie sid | X-Debbugs-Cc: Dirk Eddelbuettel | User: debian...@lists.debian.org | Usertags: regression | | Hi Maintainer | | r-cran-dimred's autopkgtest regresses when t

Bug#1074528: r-bioc-eir: autopkgtest regression with r-base 4.4.1 (i386)

2024-06-30 Thread Dirk Eddelbuettel
On 30 June 2024 at 12:13, Graham Inggs wrote: | Source: r-bioc-eir | Version: 0.40.2+dfsg-1 | Severity: serious | X-Debbugs-Cc: Dirk Eddelbuettel | User: debian...@lists.debian.org | Usertags: regression | | Hi Maintainer | | r-bioc-eir's autopkgtest regresses when tested with r-base 4.4

Bug#1072650: RM: quantlib-python [riscv64] -- RoM

2024-06-21 Thread Dirk Eddelbuettel
Package: ftp.debian.org Severity: normal As of the last release, quantlib-python no longer builds on riscv64 within the 600 minute window. The source package quantlib-swig, using source package libquantlib-dev, puts considerable strain on the C++ compiler and system and several architectures hav

Bug#1072650: src:quantlib-swig: fails to migrate to testing for too long: FTBFS on armel, armhf, i386 and riscv64

2024-06-20 Thread Dirk Eddelbuettel
On 20 June 2024 at 12:16, Bo YU wrote: | hi, | | On Mon, Jun 17, 2024 at 7:16 AM Bo YU wrote: | > | > Hi, | > | > On Mon, Jun 17, 2024 at 6:41 AM Dirk Eddelbuettel wrote: | > > | > > | > > Hi Paul, | > > | > > Thanks for the prompt and detailed r

Bug#1072650: src:quantlib-swig: fails to migrate to testing for too long: FTBFS on armel, armhf, i386 and riscv64

2024-06-16 Thread Dirk Eddelbuettel
Hi Paul, Thanks for the prompt and detailed reply. On 16 June 2024 at 16:13, Paul Gevers wrote: | Hi Dirk, | | On 16-06-2024 2:42 p.m., Dirk Eddelbuettel wrote: | > I may need a hgand with riscv64. | | That's normally a question to the porters, in CC now, so they can have a

Bug#1072650: src:quantlib-swig: fails to migrate to testing for too long: FTBFS on armel, armhf, i386 and riscv64

2024-06-16 Thread Dirk Eddelbuettel
Paul, Graham, I may need a hgand with riscv64. The 1.34-1 revision needed some build changes I had done poorly in such a way that the -O0 no longer applied to some arches, this has been fixed in 1.34-2 so armel, armhf, i386 are good. But riskv64 still times out. Can we expand the build-time wi

Bug#1072979: beast-mcmc - build-dependencies unsatisfiable on i386.

2024-06-11 Thread Dirk Eddelbuettel
On 11 June 2024 at 10:05, Peter Green wrote: | Package: beast-mcmc | Version: 1.10.4+dfsg-5 | Severity: serious | x-debbugs-cc: r-cran-rj...@packages.debian.org | | beast-mcmc build-depends on r-cran-rjava, which is no longer available | on i386. It appears that the package failed to build, and

Bug#1072648: src:survival: fails to migrate to testing for too long: triggers autopkgtest issues in r-cran-popepi which needs an update

2024-06-06 Thread Dirk Eddelbuettel
On 6 June 2024 at 08:22, Johannes Ranke wrote: | Am Mittwoch, 5. Juni 2024, 22:27:09 CEST schrieb Dirk Eddelbuettel: | > On 5 June 2024 at 21:55, Paul Gevers wrote: | > | Source: survival | > | Version: 3.5-8-1 | > | Severity: serious | > | Control: close -1 3.6-4-1 | >

Bug#1072650: src:quantlib-swig: fails to migrate to testing for too long: FTBFS on armel, armhf, i386 and riscv64

2024-06-05 Thread Dirk Eddelbuettel
On 5 June 2024 at 21:57, Paul Gevers wrote: | Source: quantlib-swig | Version: 1.33-1 | Severity: serious | Control: close -1 1.34-1 | Tags: sid trixie ftbfs | User: release.debian@packages.debian.org | Usertags: out-of-sync | | Dear maintainer(s), | | The Release Team considers packages th

Bug#1072648: src:survival: fails to migrate to testing for too long: triggers autopkgtest issues

2024-06-05 Thread Dirk Eddelbuettel
On 5 June 2024 at 21:55, Paul Gevers wrote: | Source: survival | Version: 3.5-8-1 | Severity: serious | Control: close -1 3.6-4-1 | Tags: sid trixie | User: release.debian@packages.debian.org | Usertags: out-of-sync | | Dear maintainer(s), | | The Release Team considers packages that are ou

Bug#1071362: rpy2: FTBFS: rpy2/tests/rinterface/test_embedded_r.py s.......Fatal Python error: Segmentation fault

2024-05-26 Thread Dirk Eddelbuettel
We are still having the open issue of rpy2 now segfaulting on the embedding tests which reproduces on my plain vanilla amd64 setup -- so I commented that test out too. Laurent: Any idea why R 4.4.0 and rpy2 do not get along on embedding? Cheers, Dirk -- dirk.eddelbuettel.com | @eddelbuettel |

Bug#1071362: rpy2: FTBFS: rpy2/tests/rinterface/test_embedded_r.py s.......Fatal Python error: Segmentation fault

2024-05-26 Thread Dirk Eddelbuettel
On 25 May 2024 at 12:35, Bo YU wrote: | Hi, | On Sat, May 18, 2024 at 06:41:53AM -0500, Dirk Eddelbuettel wrote: | > | >On 17 May 2024 at 23:05, Santiago Vila wrote: | >| Dirk Eddelbuettel wrote: | >| > Is there a chance this could be spurious? | >| | >| Unlikely because

Bug#1071362: rpy2 segfaults in tests under Debian bulk rebuild

2024-05-18 Thread Dirk Eddelbuettel
On 18 May 2024 at 07:59, Dirk Eddelbuettel wrote: | | Hi Laurent, | | We a build issue in Debian found via bulk rebuilds. Which everything current | in 'unstable', rpy2 (version 3.5.16) segfaults in a test when embedding. | | Details are at https://bugs.debian.org/1071362 | | If yo

Bug#1071362: rpy2: FTBFS: rpy2/tests/rinterface/test_embedded_r.py s.......Fatal Python error: Segmentation fault

2024-05-18 Thread Dirk Eddelbuettel
On 17 May 2024 at 23:05, Santiago Vila wrote: | Dirk Eddelbuettel wrote: | > Is there a chance this could be spurious? | | Unlikely because it also happens here: | | https://tests.reproducible-builds.org/debian/rb-pkg/unstable/amd64/rpy2.html Ok, I will get in touch with Laurent. D

Bug#1071362: rpy2: FTBFS: rpy2/tests/rinterface/test_embedded_r.py s.......Fatal Python error: Segmentation fault

2024-05-17 Thread Dirk Eddelbuettel
Is there a chance this could be spurious? The R API is reasonably stable, including the part for embedding R (and I am upstream for a small project doing that from C++). rpy2 is also mature and stable. So could this be a one-off? Dirk -- dirk.eddelbuettel.com | @eddelbuettel | e...@debian.o

Bug#1070840: r-cran-ff: autopkgtest regression with r-base 4.4.0

2024-05-10 Thread Dirk Eddelbuettel
On 10 May 2024 at 06:28, Dirk Eddelbuettel wrote: | | On 10 May 2024 at 10:54, Graham Inggs wrote: | | Source: r-cran-ff | | Version: 4.0.12+ds-1 | | Severity: serious | | X-Debbugs-Cc: Dirk Eddelbuettel | | User: debian...@lists.debian.org | | Usertags: regression | | | | Hi Maintainer

Bug#1070842: r-bioc-mutationalpatterns: autopkgtest regression with r-base 4.4.0

2024-05-10 Thread Dirk Eddelbuettel
On 10 May 2024 at 11:01, Graham Inggs wrote: | Source: r-bioc-mutationalpatterns | Version: 3.12.0+dfsg-1 | Severity: serious | X-Debbugs-Cc: Dirk Eddelbuettel | User: debian...@lists.debian.org | Usertags: regression | | Hi Maintainer | | r-bioc-mutationalpatterns' autopkgtest regresses

Bug#1070843: r-bioc-s4vectors: autopkgtest regression with r-base 4.4.0

2024-05-10 Thread Dirk Eddelbuettel
On 10 May 2024 at 11:04, Graham Inggs wrote: | Source: r-bioc-s4vectors | Version: 0.40.2+dfsg-1 | Severity: serious | X-Debbugs-Cc: Dirk Eddelbuettel | User: debian...@lists.debian.org | Usertags: regression | | Hi Maintainer | | r-bioc-s4vectors' autopkgtest regresses when tested w

Bug#1070841: r-bioc-iranges: autopkgtest regression with r-base 4.4.0

2024-05-10 Thread Dirk Eddelbuettel
On 10 May 2024 at 10:58, Graham Inggs wrote: | Source: r-bioc-iranges | Version: 2.36.0-1 | Severity: serious | X-Debbugs-Cc: Dirk Eddelbuettel | User: debian...@lists.debian.org | Usertags: regression | | Hi Maintainer | | r-bioc-iranges' autopkgtest regresses when tested with r-base

Bug#1070840: r-cran-ff: autopkgtest regression with r-base 4.4.0

2024-05-10 Thread Dirk Eddelbuettel
On 10 May 2024 at 10:54, Graham Inggs wrote: | Source: r-cran-ff | Version: 4.0.12+ds-1 | Severity: serious | X-Debbugs-Cc: Dirk Eddelbuettel | User: debian...@lists.debian.org | Usertags: regression | | Hi Maintainer | | r-cran-ff's autopkgtest regresses when tested with r-base 4.4

Bug#1069842: rjava: FTBFS: /usr/bin/ld: cannot find -ldeflate: No such file or directory

2024-04-25 Thread Dirk Eddelbuettel
reassign 1069842 r-base thanks On 25 April 2024 at 18:27, Santiago Vila wrote: | Package: src:rjava | Version: 1.0-11-1 | Severity: serious | Tags: ftbfs | | Dear maintainer: | | During a rebuild of all packages in unstable, your package failed to build: Thanks for this. It is caused by the j

Bug#1066403: R packages failing to build with missing -ltirpc are actually an issue in r-base

2024-03-13 Thread Dirk Eddelbuettel
-Depends to fix build issue from side effects of t64 transition (Closes: #1065216) -- Dirk Eddelbuettel Mon, 04 Mar 2024 08:54:45 -0600 I will take care of it in -3. Dirk -- dirk.eddelbuettel.com | @eddelbuettel | e...@debian.org

Bug#1065216: r-base: recent libc6-dev change causes the xdr feature to be dropped

2024-03-04 Thread Dirk Eddelbuettel
On 1 March 2024 at 23:36, Aurelien Jarno wrote: | Source: r-base | Version: 4.3.3-1 | Severity: serious | Tags: ftbfs | Justification: fails to build from source (but built successfully in the past) | User: debian-gl...@lists.debian.org | Usertags: libtirpc-dev | | Dear maintainer, | | Starting

Bug#1063320: gretl: NMU diff for 64-bit time_t transition

2024-02-28 Thread Dirk Eddelbuettel
On 29 February 2024 at 00:20, Steve Langasek wrote: | Dear maintainer, | | Please find attached a final version of this patch for the time_t | transition. This patch is being uploaded to unstable. | | Note that this adds a versioned build-dependency on dpkg-dev, to guard | against accidental b

Bug#1062364: dieharder: NMU diff for 64-bit time_t transition

2024-02-28 Thread Dirk Eddelbuettel
On 28 February 2024 at 21:28, mwhud...@fastmail.fm wrote: | Dear maintainer, | | Please find attached a final version of this patch for the time_t | transition. This patch is being uploaded to unstable. | | Note that this adds a versioned build-dependency on dpkg-dev, to guard | against accide

Bug#1063320: gretl: NMU diff for 64-bit time_t transition

2024-02-07 Thread Dirk Eddelbuettel
On 6 February 2024 at 06:43, Steve Langasek wrote: | Source: gretl | Version: 2023c-2 | Severity: serious | Tags: patch pending sid trixie | Justification: library ABI skew on upgrade | User: debian-...@lists.debian.org | Usertags: time-t | | NOTICE: these changes must not be uploaded to unstabl

Bug#1062364: dieharder: NMU diff for 64-bit time_t transition

2024-02-07 Thread Dirk Eddelbuettel
On 1 February 2024 at 07:21, mwhud...@debian.org wrote: | Source: dieharder | Version: 3.31.1.4-1 | Severity: serious | Tags: patch pending | Justification: library ABI skew on upgrade | User: debian-...@lists.debian.org | Usertags: time-t | | Dear maintainer, | | As part of the 64-bit time_t t

Bug#1060101: Boost 1.81 removal

2024-01-17 Thread Dirk Eddelbuettel
On 14 January 2024 at 06:49, Dirk Eddelbuettel wrote: | | FYI two days before you filed #1060101 I actually happened to have updated | r-cran-bh to 1.84.0 (upstream, which is me, went to the 1.84.0 version | released in December as Boost releases every four months) using 1.83: | |r-cran-bh

Bug#1060101: Boost 1.81 removal

2024-01-14 Thread Dirk Eddelbuettel
+b2 * debian/control: Set Build-Depends: to current R version * debian/control: Switch to virtual debhelper-compat (= 13) -- Dirk Eddelbuettel Wed, 10 Jan 2024 07:20:09 -0600 So this should sort itself out by itself in a matter of days. r-cran-bh is healthy: https

Bug#1059875: RM: rJava [i386] -- RoM: FTBFS as i386 builds no longer maintained upstream

2024-01-11 Thread Dirk Eddelbuettel
( Resending to now correctly-typed package r-cran-rcdklibs -- Dirk ) On 11 January 2024 at 07:09, Dirk Eddelbuettel wrote: | | Package: ftp.debian.org | Severity: normal | | The rJava package (source package 'rjava', binary package r-cran-rjava) no | longer builds on i386 as m

Bug#1059875: RM: rJava [i386] -- RoM: FTBFS as i386 builds no longer maintained upstream

2024-01-11 Thread Dirk Eddelbuettel
rjava |1.0-6-1 | source rjava | 1.0-10-1 | source Maintainer: Dirk Eddelbuettel --- Reason --- -- Checking reverse dependencies... # Broken Depends: libgoby-java: goby-java r-cran-rcdk: r-cran-rcdk r-

Bug#1059875: src:rjava: fails to migrate to testing for too long: FTBFS on i386

2024-01-02 Thread Dirk Eddelbuettel
(Adrian: Added you to CCs per suggestion of Paul.) Hi Paul, On 2 January 2024 at 21:00, Paul Gevers wrote: | Hi Dirk, | | On 02-01-2024 20:42, Dirk Eddelbuettel wrote: | > | The Release Team considers packages that are out-of-sync between testing | > | and unstable for more than 30 d

Bug#1059875: src:rjava: fails to migrate to testing for too long: FTBFS on i386

2024-01-02 Thread Dirk Eddelbuettel
On 2 January 2024 at 20:07, Paul Gevers wrote: | Source: rjava | Version: 1.0-6-1 | Severity: serious | Control: close -1 1.0-10-1 | Tags: sid trixie ftbfs | User: release.debian@packages.debian.org | Usertags: out-of-sync | | Dear maintainer(s), | | The Release Team considers packages that

Bug#1055922: rmatrix: ABI change in Matrix 1.6-2

2023-11-30 Thread Dirk Eddelbuettel
Hi Graham On 30 November 2023 at 07:54, Graham Inggs wrote: | Hi Dirk | | On Thu, 30 Nov 2023 at 00:51, Dirk Eddelbuettel wrote: | > Ping squared. | > | > If I don't hear from you I may just close this. I believe this (non-, to me) | > issue has been taken care of. If you

Bug#1055922: rmatrix: ABI change in Matrix 1.6-2

2023-11-29 Thread Dirk Eddelbuettel
On 27 November 2023 at 08:27, Dirk Eddelbuettel wrote: | | Graham, | | Quick ping to ask where we are we on this? Matrix is in testing so can this | be closed? Ping squared. If I don't hear from you I may just close this. I believe this (non-, to me) issue has been taken care of. I

Bug#1055922: rmatrix: ABI change in Matrix 1.6-2

2023-11-27 Thread Dirk Eddelbuettel
Graham, Quick ping to ask where we are we on this? Matrix is in testing so can this be closed? Cheers, Dirk -- dirk.eddelbuettel.com | @eddelbuettel | e...@debian.org

Bug#1055922: rmatrix: ABI change in Matrix 1.6-2

2023-11-20 Thread Dirk Eddelbuettel
Hi Graham, On 20 November 2023 at 12:13, Graham Inggs wrote: | On Sun, 19 Nov 2023 at 14:59, Dirk Eddelbuettel wrote: | > So it contains a patch by Mikael which had been applied _permitting Matrix | > 1.6-2_ to get to CRAN. So for this particular pair it was the other way around. | |

Bug#1055922: rmatrix: ABI change in Matrix 1.6-2

2023-11-19 Thread Dirk Eddelbuettel
On 19 November 2023 at 09:59, Dirk Eddelbuettel wrote: | On 19 November 2023 at 13:49, Graham Inggs wrote: | | We don't believe only touching debian/changelog, or a binNMU, is | | sufficient. We were surprised that your r-cran-lme4 upload did not at | | least include: | | Depends: r-cran-m

Bug#1055922: rmatrix: ABI change in Matrix 1.6-2

2023-11-19 Thread Dirk Eddelbuettel
Hi Graham, On 19 November 2023 at 13:49, Graham Inggs wrote: | On Tue, 14 Nov 2023 at 12:42, Dirk Eddelbuettel wrote: | > Doesn't 'normal' do that? | | No, only serious and above are considered RC [1] and also for migration. | | This week, Paul Gevers and I spent some time

Bug#1055922: rmatrix: ABI change in Matrix 1.6-2

2023-11-18 Thread Dirk Eddelbuettel
I will not engage any more with debian-r. But this is now at the BTS so a clarification may be in order. This started as I had sent an email as a heads-up to fellow maintainers (via that mostly pointless list) informing them that their packages would exhibit a bug following a bug in package Matri

Bug#1055922: rmatrix: ABI change in Matrix 1.6-2

2023-11-17 Thread Dirk Eddelbuettel
On 14 November 2023 at 07:42, Dirk Eddelbuettel wrote: | | On 14 November 2023 at 12:26, Graham Inggs wrote: | | Hi Dirk | | | | On Tue, 14 Nov 2023 at 12:01, Dirk Eddelbuettel wrote: | | > Well that seems to be a) the wrong severity and b) the wrong package. | | | | Both are correct. We

Bug#1055922: rmatrix: ABI change in Matrix 1.6-2

2023-11-14 Thread Dirk Eddelbuettel
On 14 November 2023 at 12:26, Graham Inggs wrote: | Hi Dirk | | On Tue, 14 Nov 2023 at 12:01, Dirk Eddelbuettel wrote: | > Well that seems to be a) the wrong severity and b) the wrong package. | | Both are correct. We do not want rmatrix to migrate and break | packages in testing. Does

Bug#1055922: rmatrix: ABI change in Matrix 1.6-2

2023-11-14 Thread Dirk Eddelbuettel
On 14 November 2023 at 09:15, Graham Inggs wrote: | Source: rmatrix | Version: 1.6-2-1 | Severity: serious | X-Debbugs-Cc: debia...@lists.debian.org | | Hi Dirk | | I'm opening this bug as a place for discussion and to track the | affected packages. It can be closed once rmatrix and its | reve

Bug#1054921: [Quantlib-dev] Build error for quantlib-swig on mips64el

2023-10-30 Thread Dirk Eddelbuettel
On 30 October 2023 at 12:23, Luigi Ballabio wrote: | Hello Dirk, unfortunately I have no idea what can cause this — do you think it | possible that the size of the wrappers crossed some threshold and relocations | started to occur that weren't there before? Adrian (CC'ed) supplied a merge reques

Bug#1054921: Build error for quantlib-swig on mips64el

2023-10-29 Thread Dirk Eddelbuettel
The Debian package fails to build now on mipsel, a log is at [1]. The gist seems to be a relocation error: g++ -shared -Wl,-O1 -Wl,-Bsymbolic-functions -O0 -g0 -mxgot --param ggc-min-expand=20 -DBOOST_NO_AUTO_PTR build/temp.linux-mips64-cpython-311/QuantLib/quantlib_wrap.o -L/usr/lib/mips6

Bug#1054921: quantlib-swig: FTBFS on mips64el

2023-10-28 Thread Dirk Eddelbuettel
On 28 October 2023 at 22:53, Sebastian Ramacher wrote: | Source: quantlib-swig | Version: 1.32-1 | Severity: serious | Tags: ftbfs | Justification: fails to build from source (but built successfully in the past) | X-Debbugs-Cc: sramac...@debian.org | | https://buildd.debian.org/status/fetch.php

Bug#1050432: rpy2: FTBFS on mips64el

2023-08-27 Thread Dirk Eddelbuettel
On 27 August 2023 at 18:44, YunQiang Su wrote: | Maybe there is something wrong with ffi. (In fact the complex support of mips | was added by me. ;) Hah. | I am looking for a way to use debug to debug the extensions. | If you have any documents, can you point it to me. I can help you with R,

Bug#1050432: rpy2: FTBFS on mips64el

2023-08-27 Thread Dirk Eddelbuettel
On 27 August 2023 at 14:09, YunQiang Su wrote: | Dirk Eddelbuettel 于2023年8月27日周日 00:15写道: | > | > | > Hi all, | > | > As the test failures for complex valued variables appeared to be systemic on | > the 'mips64el' platform, I buckled down, taught myself some Python =

Bug#1050432: rpy2: FTBFS on mips64el

2023-08-26 Thread Dirk Eddelbuettel
Hi all, As the test failures for complex valued variables appeared to be systemic on the 'mips64el' platform, I buckled down, taught myself some Python ==:-) and conditioned the number of failing tests away via @pytest.mark.skipif(platform.machine() == 'mips64' and sys.byteorder == 'little',

Bug#1050432: rpy2: FTBFS on mips64el

2023-08-24 Thread Dirk Eddelbuettel
Paul, Thanks for the hint. I was aware and had been meaning to bring this up with Laurent (upstream, now CCed). Laurent: I should have access to a 'porterbox' running mips64el if you have an idea about what may be going on here / have a branch to test. Paul: While I have you here, and as all t

Bug#1049438: r-cran-rgdal: autopkgtest needs update for new version of r-cran-sp

2023-08-18 Thread Dirk Eddelbuettel
On 18 August 2023 at 13:58, Andreas Tille wrote: | Control: tags -1 upstream | Control: forwarded -1 Roger Bivand | | Hi Roger, | | the CI tests in Debian uncovered some conflict between recent rgdal and | version 2.0 of sp. As you either can see in the bug report that was | filed[1] or in a

Bug#1041556: What is the architecture name in R what we call armel/armhf

2023-08-17 Thread Dirk Eddelbuettel
On 17 August 2023 at 07:24, Graham Inggs wrote: | On Thu, 17 Aug 2023 at 05:52, Andreas Tille wrote: | > I tried to skip two tests in r-cran-checkmate with this patch[1] | > which is based on | > | > arch <- R.version$arch | > identical(arch, "i386") || identical(arch, "i686") || identical(a

Bug#1028111: r-cran-clock: autopkgtest failure on 32bit

2023-08-12 Thread Dirk Eddelbuettel
The 'bug fix' applied to the _previous_ version of CRAN package clock, namely a somewhat 'wild' sed patching of a single ie # Ignore single test for i386 architecture. This is a workaround for bug #1024828 of r-cran-igraph if [ "$hostarch" = "i386" -o "$hostarch" = "armel" -o "$hostarch" = "ar

Bug#1042889: vm breakage with Emacs 29

2023-08-02 Thread Dirk Eddelbuettel
On 2 August 2023 at 14:41, Ian Jackson wrote: | Dirk Eddelbuettel writes ("Re: vm breakage with Emacs 29"): | > On 2 August 2023 at 13:17, Ian Jackson wrote: | > | Hi. Since you were helpful with #1039105 "Fails to start with Emacs | > | 28" I thought I would dr

Bug#1038405: Bug#1037439: r-cran-rstan/armhf FTBFS with r-cran-bh 1.74

2023-08-01 Thread Dirk Eddelbuettel
On 31 July 2023 at 23:13, Adrian Bunk wrote: | On Mon, Jun 19, 2023 at 04:37:22PM +0300, Adrian Bunk wrote: | > On Tue, Jun 13, 2023 at 03:30:18PM -0500, Dirk Eddelbuettel wrote: | > > | > > On 13 June 2023 at 13:15, Steve Langasek wrote: | > > | Control: reassign -1 r

Bug#1042040: quantlib-swig: FTBFS: QuantLib/quantlib_wrap.cpp:9493:19: error: ‘LexicographicalView’ in namespace ‘QuantLib’ does not name a template type

2023-07-25 Thread Dirk Eddelbuettel
On 25 July 2023 at 23:05, Lucas Nussbaum wrote: | Source: quantlib-swig | Version: 1.30-2 | Severity: serious | Justification: FTBFS | Tags: trixie sid ftbfs | | Hi, | | During a rebuild of all packages in sid, your package failed to build | on amd64. I'll get on this -- it is lagging behind t

Bug#1041738: src:lme4: fails to migrate to testing for too long: causes timeout in autopkgtests on i386

2023-07-23 Thread Dirk Eddelbuettel
On 23 July 2023 at 11:03, Dirk Eddelbuettel wrote: | Note that the mlmRev authors / maintainers are the same as / a subset of the | lme4 authors. They may have an idea. | | https://cran.r-project.org/package=mlmRev I just ran `R CMD check mlmRev_*tar.gz` on my amd64 (under Ubuntu 23.04), it

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