On 12 April 2025 at 16:21, Santiago Vila wrote: | Package: src:rpy2 | Version: 3.5.17-1 | Severity: serious | Tags: ftbfs trixie sid | | Dear maintainer: | | During a rebuild of all packages in unstable, your package failed to build: | | -------------------------------------------------------------------------------- | [...] | debian/rules clean | dh clean --with python3 --buildsystem=pybuild | debian/rules override_dh_auto_clean | make[1]: Entering directory '/<<PKGBUILDDIR>>' | echo "Skipping" | Skipping | make[1]: Leaving directory '/<<PKGBUILDDIR>>' | dh_autoreconf_clean -O--buildsystem=pybuild | debian/rules override_dh_clean | make[1]: Entering directory '/<<PKGBUILDDIR>>' | dh_clean | make[1]: Leaving directory '/<<PKGBUILDDIR>>' | debian/rules binary | dh binary --with python3 --buildsystem=pybuild | dh_update_autotools_config -O--buildsystem=pybuild | dh_autoreconf -O--buildsystem=pybuild | dh_auto_configure -O--buildsystem=pybuild | I: pybuild base:311: python3.13 setup.py config | /usr/bin/ld: cannot find -lzstd: No such file or directory
Noted. I will look into it. Thanks, Dirk | collect2: error: ld returned 1 exit status | Traceback (most recent call last): | File "/usr/lib/python3/dist-packages/setuptools/_distutils/spawn.py", line 70, in spawn | subprocess.check_call(cmd, env=_inject_macos_ver(env)) | ~~~~~~~~~~~~~~~~~~~~~^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ | File "/usr/lib/python3.13/subprocess.py", line 419, in check_call | raise CalledProcessError(retcode, cmd) | subprocess.CalledProcessError: Command '['/usr/bin/x86_64-linux-gnu-gcc', '/tmp/tmp_pw_r_0gujo9hr/tmp/tmp_pw_r_0gujo9hr/test_pw_r.o', '-L/usr/lib/R/lib', '-lR', '-lpcre2-8', '-ldeflate', '-lzstd', '-llzma', '-lbz2', '-lz', '-ltirpc', '-lrt', '-ldl', '-lm', '-licuuc', '-licui18n', '-o', '/tmp/tmp_pw_r_0gujo9hr/test_pw_r']' returned non-zero exit status 1. | | The above exception was the direct cause of the following exception: | | Traceback (most recent call last): | File "/usr/lib/python3/dist-packages/setuptools/_distutils/unixccompiler.py", line 287, in link | self.spawn(linker + ld_args) | ~~~~~~~~~~^^^^^^^^^^^^^^^^^^ | File "/usr/lib/python3/dist-packages/setuptools/_distutils/ccompiler.py", line 1052, in spawn | spawn(cmd, dry_run=self.dry_run, **kwargs) | ~~~~~^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ | File "/usr/lib/python3/dist-packages/setuptools/_distutils/spawn.py", line 76, in spawn | raise DistutilsExecError( | f"command {_debug(cmd)!r} failed with exit code {err.returncode}" | ) from err | distutils.errors.DistutilsExecError: command '/usr/bin/x86_64-linux-gnu-gcc' failed with exit code 1 | | During handling of the above exception, another exception occurred: | | Traceback (most recent call last): | File "/<<PKGBUILDDIR>>/setup.py", line 141, in <module> | c_extension_status = get_r_c_extension_status( | r_home, | force_ok = os.environ.get('RPY2_API_FORCE') == 'True' | ) | File "/<<PKGBUILDDIR>>/setup.py", line 121, in get_r_c_extension_status | status = get_c_extension_status(libraries=c_ext.libraries, | include_dirs=c_ext.include_dirs, | library_dirs=c_ext.library_dirs) | File "/<<PKGBUILDDIR>>/setup.py", line 82, in get_c_extension_status | compiler.link_executable( | ~~~~~~~~~~~~~~~~~~~~~~~~^ | compiler.compile([src_file], output_dir=tmp_dir, | ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ | ...<2 lines>... | libraries=libraries, | ^^^^^^^^^^^^^^^^^^^^ | library_dirs=library_dirs) | ^^^^^^^^^^^^^^^^^^^^^^^^^^ | File "/usr/lib/python3/dist-packages/setuptools/_distutils/ccompiler.py", line 788, in link_executable | self.link( | ~~~~~~~~~^ | CCompiler.EXECUTABLE, | ^^^^^^^^^^^^^^^^^^^^^ | ...<11 lines>... | target_lang, | ^^^^^^^^^^^^ | ) | ^ | File "/usr/lib/python3/dist-packages/setuptools/_distutils/unixccompiler.py", line 289, in link | raise LinkError(msg) | distutils.errors.LinkError: command '/usr/bin/x86_64-linux-gnu-gcc' failed with exit code 1 | E: pybuild pybuild:389: configure: plugin distutils failed with: exit code=1: python3.13 setup.py config | dh_auto_configure: error: pybuild --configure -i python{version} -p 3.13 returned exit code 13 | make: *** [debian/rules:19: binary] Error 25 | dpkg-buildpackage: error: debian/rules binary subprocess returned exit status 2 | -------------------------------------------------------------------------------- | | The above is just how the build ends and not necessarily the most relevant part. | If required, the full build log is available here: | | https://people.debian.org/~sanvila/build-logs/202504/ | | About the archive rebuild: The build was made on virtual machines from AWS, | using sbuild and a reduced chroot with only build-essential packages. | | If you could not reproduce the bug please contact me privately, as I | am willing to provide ssh access to a virtual machine where the bug is | fully reproducible. | | If this is really a bug in one of the build-depends, please use | reassign and add an affects on src:rpy2, so that this is still | visible in the BTS web page for this package. | | Thanks. -- dirk.eddelbuettel.com | @eddelbuettel | e...@debian.org