On 12 April 2025 at 16:21, Santiago Vila wrote:
| Package: src:rpy2
| Version: 3.5.17-1
| Severity: serious
| Tags: ftbfs trixie sid
| 
| Dear maintainer:
| 
| During a rebuild of all packages in unstable, your package failed to build:
| 
| 
--------------------------------------------------------------------------------
| [...]
|  debian/rules clean
| dh clean --with python3 --buildsystem=pybuild
|    debian/rules override_dh_auto_clean
| make[1]: Entering directory '/<<PKGBUILDDIR>>'
| echo "Skipping"
| Skipping
| make[1]: Leaving directory '/<<PKGBUILDDIR>>'
|    dh_autoreconf_clean -O--buildsystem=pybuild
|    debian/rules override_dh_clean
| make[1]: Entering directory '/<<PKGBUILDDIR>>'
| dh_clean
| make[1]: Leaving directory '/<<PKGBUILDDIR>>'
|  debian/rules binary
| dh binary --with python3 --buildsystem=pybuild
|    dh_update_autotools_config -O--buildsystem=pybuild
|    dh_autoreconf -O--buildsystem=pybuild
|    dh_auto_configure -O--buildsystem=pybuild
| I: pybuild base:311: python3.13 setup.py config 
| /usr/bin/ld: cannot find -lzstd: No such file or directory

Noted. I will look into it.

Thanks, Dirk

| collect2: error: ld returned 1 exit status
| Traceback (most recent call last):
|   File "/usr/lib/python3/dist-packages/setuptools/_distutils/spawn.py", line 
70, in spawn
|     subprocess.check_call(cmd, env=_inject_macos_ver(env))
|     ~~~~~~~~~~~~~~~~~~~~~^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
|   File "/usr/lib/python3.13/subprocess.py", line 419, in check_call
|     raise CalledProcessError(retcode, cmd)
| subprocess.CalledProcessError: Command '['/usr/bin/x86_64-linux-gnu-gcc', 
'/tmp/tmp_pw_r_0gujo9hr/tmp/tmp_pw_r_0gujo9hr/test_pw_r.o', '-L/usr/lib/R/lib', 
'-lR', '-lpcre2-8', '-ldeflate', '-lzstd', '-llzma', '-lbz2', '-lz', '-ltirpc', 
'-lrt', '-ldl', '-lm', '-licuuc', '-licui18n', '-o', 
'/tmp/tmp_pw_r_0gujo9hr/test_pw_r']' returned non-zero exit status 1.
| 
| The above exception was the direct cause of the following exception:
| 
| Traceback (most recent call last):
|   File 
"/usr/lib/python3/dist-packages/setuptools/_distutils/unixccompiler.py", line 
287, in link
|     self.spawn(linker + ld_args)
|     ~~~~~~~~~~^^^^^^^^^^^^^^^^^^
|   File "/usr/lib/python3/dist-packages/setuptools/_distutils/ccompiler.py", 
line 1052, in spawn
|     spawn(cmd, dry_run=self.dry_run, **kwargs)
|     ~~~~~^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
|   File "/usr/lib/python3/dist-packages/setuptools/_distutils/spawn.py", line 
76, in spawn
|     raise DistutilsExecError(
|         f"command {_debug(cmd)!r} failed with exit code {err.returncode}"
|     ) from err
| distutils.errors.DistutilsExecError: command '/usr/bin/x86_64-linux-gnu-gcc' 
failed with exit code 1
| 
| During handling of the above exception, another exception occurred:
| 
| Traceback (most recent call last):
|   File "/<<PKGBUILDDIR>>/setup.py", line 141, in <module>
|     c_extension_status = get_r_c_extension_status(
|         r_home,
|         force_ok = os.environ.get('RPY2_API_FORCE') == 'True'
|     )
|   File "/<<PKGBUILDDIR>>/setup.py", line 121, in get_r_c_extension_status
|     status = get_c_extension_status(libraries=c_ext.libraries,
|                                     include_dirs=c_ext.include_dirs,
|                                     library_dirs=c_ext.library_dirs)
|   File "/<<PKGBUILDDIR>>/setup.py", line 82, in get_c_extension_status
|     compiler.link_executable(
|     ~~~~~~~~~~~~~~~~~~~~~~~~^
|         compiler.compile([src_file], output_dir=tmp_dir,
|         ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
|     ...<2 lines>...
|         libraries=libraries,
|         ^^^^^^^^^^^^^^^^^^^^
|         library_dirs=library_dirs)
|         ^^^^^^^^^^^^^^^^^^^^^^^^^^
|   File "/usr/lib/python3/dist-packages/setuptools/_distutils/ccompiler.py", 
line 788, in link_executable
|     self.link(
|     ~~~~~~~~~^
|         CCompiler.EXECUTABLE,
|         ^^^^^^^^^^^^^^^^^^^^^
|     ...<11 lines>...
|         target_lang,
|         ^^^^^^^^^^^^
|     )
|     ^
|   File 
"/usr/lib/python3/dist-packages/setuptools/_distutils/unixccompiler.py", line 
289, in link
|     raise LinkError(msg)
| distutils.errors.LinkError: command '/usr/bin/x86_64-linux-gnu-gcc' failed 
with exit code 1
| E: pybuild pybuild:389: configure: plugin distutils failed with: exit code=1: 
python3.13 setup.py config 
| dh_auto_configure: error: pybuild --configure -i python{version} -p 3.13 
returned exit code 13
| make: *** [debian/rules:19: binary] Error 25
| dpkg-buildpackage: error: debian/rules binary subprocess returned exit status 
2
| 
--------------------------------------------------------------------------------
| 
| The above is just how the build ends and not necessarily the most relevant 
part.
| If required, the full build log is available here:
| 
| https://people.debian.org/~sanvila/build-logs/202504/
| 
| About the archive rebuild: The build was made on virtual machines from AWS,
| using sbuild and a reduced chroot with only build-essential packages.
| 
| If you could not reproduce the bug please contact me privately, as I
| am willing to provide ssh access to a virtual machine where the bug is
| fully reproducible.
| 
| If this is really a bug in one of the build-depends, please use
| reassign and add an affects on src:rpy2, so that this is still
| visible in the BTS web page for this package.
| 
| Thanks.

-- 
dirk.eddelbuettel.com | @eddelbuettel | e...@debian.org

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