Glad that helped. I'm going to go buy a lottery ticket now! :) Michael Della Bitta
Applications Developer o: +1 646 532 3062 | c: +1 917 477 7906 appinions inc. “The Science of Influence Marketing” 18 East 41st Street New York, NY 10017 t: @appinions <https://twitter.com/Appinions> | g+: plus.google.com/appinions w: appinions.com <http://www.appinions.com/> On Mon, Jun 10, 2013 at 5:56 AM, Mark Wilson <m...@sanger.ac.uk> wrote: > Hi Michael > > Thanks very much for that, it did indeed solve the problem. > > I had it setup on my internal servers, as I have a separate script for > tomcat startup, but forgot all about it on the Amazon Cloud servers. > > For info > > I added > CATALINA_OPTS="-Djava.awt.headless=true" > export CATALINA_OPTS > > to $tomcat_home/bin/setenv.sh > > Thanks again > > Regards Mark > > > On 07/06/2013 19:29, "Michael Della Bitta" > <michael.della.bi...@appinions.com> wrote: > > > Hi Mark, > > > > This is a total shot in the dark, but does > > passing -Djava.awt.headless=true when you run the server help at all? > > > > More on awt headless mode: > > http://www.oracle.com/technetwork/articles/javase/headless-136834.html > > > > Michael Della Bitta > > > > Applications Developer > > > > o: +1 646 532 3062 | c: +1 917 477 7906 > > > > appinions inc. > > > > “The Science of Influence Marketing” > > > > 18 East 41st Street > > > > New York, NY 10017 > > > > t: @appinions <https://twitter.com/Appinions> | g+: > > plus.google.com/appinions > > w: appinions.com <http://www.appinions.com/> > > > > > > On Fri, Jun 7, 2013 at 11:31 AM, Mark Wilson <m...@sanger.ac.uk> wrote: > > > >> Hi > >> > >> I am having an issue with adding pdf documents to a SolrCloud index I > have > >> setup. > >> > >> I can index pdf documents fine using 4.3.0 on my local box, but I have a > >> SolrCloud instance setup on the Amazon Cloud (Using 2 servers) and I get > >> Error. > >> > >> It seems that it is not loading org.apache.pdfbox.pdmodel.PDPage. > However, > >> the jar is in the directory, and referenced in the solrconfig.xml file > >> > >> <lib dir="/www/solr/lib/contrib/extraction/lib" regex=".*\.jar" /> > >> <lib dir="/www/solr/lib/" regex="solr-cell-\d.*\.jar" /> > >> > >> <lib dir="/www/solr/lib/contrib/clustering/lib/" regex=".*\.jar" /> > >> <lib dir="/www/solr/lib/" regex="solr-clustering-\d.*\.jar" /> > >> > >> <lib dir="/www/solr/lib/contrib/langid/lib/" regex=".*\.jar" /> > >> <lib dir="/www/solr/lib/" regex="solr-langid-\d.*\.jar" /> > >> > >> <lib dir="/www/solr/lib/contrib/velocity/lib" regex=".*\.jar" /> > >> <lib dir="/www/solr/lib/" regex="solr-velocity-\d.*\.jar" /> > >> > >> When I start Tomcat, I can see that the file has loaded. > >> > >> 2705 [coreLoadExecutor-4-thread-3] INFO > >> org.apache.solr.core.SolrResourceLoader Adding > >> 'file:/www/solr/lib/contrib/extraction/lib/pdfbox-1.7.1.jar' to > classloader > >> > >> But when I try to add a document. > >> > >> java > >> -Durl= > >> http://ec2-blah-blaheu-west-1.compute.amazonaws.com:8080/solr/quosa2-c > >> ollection/update/extract -Dparams=literal.id=pdf1 -Dtype=text/pdf -jar > >> post.jar 2008.Genomics.pdf > >> > >> > >> I get this error. I¹m running on an Ubuntu machine. > >> > >> Linux ip-10-229-125-163 3.5.0-21-generic #32-Ubuntu SMP Tue Dec 11 > 18:51:59 > >> UTC 2012 x86_64 x86_64 x86_64 GNU/Linux > >> > >> Error log. > >> > >> 88168 [http-bio-8080-exec-1] INFO > >> org.apache.solr.update.processor.LogUpdateProcessor > >> [quosa2-collection_shard1_replica1] webapp=/solr path=/update/extract > >> params={literal.id=pdf1} {} 0 1534 > >> 88180 [http-bio-8080-exec-1] ERROR > >> org.apache.solr.servlet.SolrDispatchFilter > >> null:java.lang.RuntimeException: java.lang.UnsatisfiedLinkError: > >> /usr/lib/jvm/java-7-oracle/jre/lib/amd64/xawt/libmawt.so: > libXrender.so.1: > >> cannot open shared object file: No such file or directory > >> at > >> > >> > org.apache.solr.servlet.SolrDispatchFilter.sendError(SolrDispatchFilter.java > >> :670) > >> at > >> > >> > org.apache.solr.servlet.SolrDispatchFilter.doFilter(SolrDispatchFilter.java: > >> 380) > >> at > >> > >> > org.apache.solr.servlet.SolrDispatchFilter.doFilter(SolrDispatchFilter.java: > >> 155) > >> at > >> > >> > org.apache.catalina.core.ApplicationFilterChain.internalDoFilter(Application > >> FilterChain.java:243) > >> at > >> > >> > org.apache.catalina.core.ApplicationFilterChain.doFilter(ApplicationFilterCh > >> ain.java:210) > >> at > >> > >> > org.apache.catalina.core.StandardWrapperValve.invoke(StandardWrapperValve.ja > >> va:222) > >> at > >> > >> > org.apache.catalina.core.StandardContextValve.invoke(StandardContextValve.ja > >> va:123) > >> at > >> > >> > org.apache.catalina.core.StandardHostValve.invoke(StandardHostValve.java:171 > >> ) > >> at > >> > >> > org.apache.catalina.valves.ErrorReportValve.invoke(ErrorReportValve.java:99) > >> at > >> > org.apache.catalina.valves.AccessLogValve.invoke(AccessLogValve.java:947) > >> at > >> > >> > org.apache.catalina.core.StandardEngineValve.invoke(StandardEngineValve.java > >> :118) > >> at > >> > org.apache.catalina.connector.CoyoteAdapter.service(CoyoteAdapter.java:408) > >> at > >> > >> > org.apache.coyote.http11.AbstractHttp11Processor.process(AbstractHttp11Proce > >> ssor.java:1009) > >> at > >> > >> > org.apache.coyote.AbstractProtocol$AbstractConnectionHandler.process(Abstrac > >> tProtocol.java:589) > >> at > >> > >> > org.apache.tomcat.util.net.JIoEndpoint$SocketProcessor.run(JIoEndpoint.java: > >> 310) > >> at > >> > >> > java.util.concurrent.ThreadPoolExecutor.runWorker(ThreadPoolExecutor.java:11 > >> 45) > >> at > >> > >> > java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:6 > >> 15) > >> at java.lang.Thread.run(Thread.java:722) > >> Caused by: java.lang.UnsatisfiedLinkError: > >> /usr/lib/jvm/java-7-oracle/jre/lib/amd64/xawt/libmawt.so: > libXrender.so.1: > >> cannot open shared object file: No such file or directory > >> at java.lang.ClassLoader$NativeLibrary.load(Native Method) > >> at java.lang.ClassLoader.loadLibrary1(ClassLoader.java:1939) > >> at java.lang.ClassLoader.loadLibrary0(ClassLoader.java:1864) > >> at java.lang.ClassLoader.loadLibrary(ClassLoader.java:1825) > >> at java.lang.Runtime.load0(Runtime.java:792) > >> at java.lang.System.load(System.java:1059) > >> at java.lang.ClassLoader$NativeLibrary.load(Native Method) > >> at java.lang.ClassLoader.loadLibrary1(ClassLoader.java:1939) > >> at java.lang.ClassLoader.loadLibrary0(ClassLoader.java:1864) > >> at java.lang.ClassLoader.loadLibrary(ClassLoader.java:1846) > >> at java.lang.Runtime.loadLibrary0(Runtime.java:845) > >> at java.lang.System.loadLibrary(System.java:1084) > >> at > sun.security.action.LoadLibraryAction.run(LoadLibraryAction.java:67) > >> at > sun.security.action.LoadLibraryAction.run(LoadLibraryAction.java:47) > >> at java.security.AccessController.doPrivileged(Native Method) > >> at java.awt.Toolkit.loadLibraries(Toolkit.java:1648) > >> at java.awt.Toolkit.<clinit>(Toolkit.java:1670) > >> at java.awt.Color.<clinit>(Color.java:275) > >> at org.apache.pdfbox.pdmodel.PDPage.<clinit>(PDPage.java:72) > >> at > org.apache.pdfbox.pdmodel.PDPageNode.getAllKids(PDPageNode.java:212) > >> at > org.apache.pdfbox.pdmodel.PDPageNode.getAllKids(PDPageNode.java:184) > >> at > >> > >> > org.apache.pdfbox.pdmodel.PDDocumentCatalog.getAllPages(PDDocumentCatalog.ja > >> va:211) > >> at > >> > org.apache.pdfbox.util.PDFTextStripper.writeText(PDFTextStripper.java:328) > >> at org.apache.tika.parser.pdf.PDF2XHTML.process(PDF2XHTML.java:72) > >> at org.apache.tika.parser.pdf.PDFParser.parse(PDFParser.java:153) > >> at > >> org.apache.tika.parser.CompositeParser.parse(CompositeParser.java:242) > >> at > >> org.apache.tika.parser.CompositeParser.parse(CompositeParser.java:242) > >> at > >> org.apache.tika.parser.AutoDetectParser.parse(AutoDetectParser.java:120) > >> at > >> > >> > org.apache.solr.handler.extraction.ExtractingDocumentLoader.load(ExtractingD > >> ocumentLoader.java:219) > >> at > >> > >> > org.apache.solr.handler.ContentStreamHandlerBase.handleRequestBody(ContentSt > >> reamHandlerBase.java:74) > >> at > >> > >> > org.apache.solr.handler.RequestHandlerBase.handleRequest(RequestHandlerBase. > >> java:135) > >> at > >> > >> > org.apache.solr.core.RequestHandlers$LazyRequestHandlerWrapper.handleRequest > >> (RequestHandlers.java:242) > >> at org.apache.solr.core.SolrCore.execute(SolrCore.java:1816) > >> at > >> > >> > org.apache.solr.servlet.SolrDispatchFilter.execute(SolrDispatchFilter.java:6 > >> 56) > >> at > >> > >> > org.apache.solr.servlet.SolrDispatchFilter.doFilter(SolrDispatchFilter.java: > >> 359) > >> ... 16 more > >> > >> 88234 [http-bio-8080-exec-2] INFO org.apache.solr.update.UpdateHandler > > >> start > >> > >> > commit{,optimize=false,openSearcher=true,waitSearcher=true,expungeDeletes=fa > >> lse,softCommit=false,prepareCommit=false} > >> 88268 [http-bio-8080-exec-2] INFO org.apache.solr.core.SolrCore > >> SolrDeletionPolicy.onCommit: commits:num=2 > >> > >> commit{dir=NRTCachingDirectory(org.apache.lucene.store.MMapDirectory@ > >> /www/so > >> lr/home1/quosa2-collection_shard1_replica1/data/index > >> lockFactory=org.apache.lucene.store.NativeFSLockFactory@7b2d9e10; > >> maxCacheMB=48.0 > >> > maxMergeSizeMB=4.0),segFN=segments_15,generation=41,filenames=[segments_15] > >> > >> commit{dir=NRTCachingDirectory(org.apache.lucene.store.MMapDirectory@ > >> /www/so > >> lr/home1/quosa2-collection_shard1_replica1/data/index > >> lockFactory=org.apache.lucene.store.NativeFSLockFactory@7b2d9e10; > >> maxCacheMB=48.0 > >> > maxMergeSizeMB=4.0),segFN=segments_16,generation=42,filenames=[segments_16] > >> 88268 [http-bio-8080-exec-2] INFO org.apache.solr.core.SolrCore > newest > >> commit = 42[segments_16] > >> 88269 [http-bio-8080-exec-2] INFO > org.apache.solr.search.SolrIndexSearcher > >> Opening Searcher@6175f8cb main > >> 88270 [searcherExecutor-6-thread-1] INFO org.apache.solr.core.SolrCore > > >> QuerySenderListener sending requests to Searcher@6175f8cb > >> main{StandardDirectoryReader(segments_15:9:nrt)} > >> 88271 [searcherExecutor-6-thread-1] INFO org.apache.solr.core.SolrCore > > >> QuerySenderListener done. > >> 88273 [searcherExecutor-6-thread-1] INFO org.apache.solr.core.SolrCore > > >> [quosa2-collection_shard1_replica1] Registered new searcher > >> Searcher@6175f8cb main{StandardDirectoryReader(segments_15:9:nrt)} > >> 88273 [http-bio-8080-exec-2] INFO org.apache.solr.update.UpdateHandler > > >> end_commit_flush > >> 88288 [http-bio-8080-exec-2] INFO > >> org.apache.solr.update.SolrCmdDistributor > >> Distrib commit to:[StdNode: > >> http://10.234.215.24:8080/solr/quosa2-collection_shard1_replica3/, > >> StdNode: > >> http://10.229.125.163:8080/solr/quosa2-collection_shard2_replica1/, > >> StdNode: > >> http://10.234.215.24:8080/solr/quosa2-collection_shard2_replica3/, > >> StdNode: > >> http://10.229.125.163:8080/solr/quosa2-collection_shard3_replica1/, > >> StdNode: > >> http://10.234.215.24:8080/solr/quosa2-collection_shard3_replica3/] > >> > >> > params:commit_end_point=true&commit=true&softCommit=false&waitSearcher=true& > >> expungeDeletes=false > >> 88321 [http-bio-8080-exec-3] INFO org.apache.solr.update.UpdateHandler > > >> start > >> > >> > commit{,optimize=false,openSearcher=true,waitSearcher=true,expungeDeletes=fa > >> lse,softCommit=false,prepareCommit=false} > >> 88334 [http-bio-8080-exec-4] INFO org.apache.solr.update.UpdateHandler > > >> start > >> > >> > commit{,optimize=false,openSearcher=true,waitSearcher=true,expungeDeletes=fa > >> lse,softCommit=false,prepareCommit=false} > >> 88351 [http-bio-8080-exec-3] INFO org.apache.solr.core.SolrCore > >> SolrDeletionPolicy.onCommit: commits:num=2 > >> > >> commit{dir=NRTCachingDirectory(org.apache.lucene.store.MMapDirectory@ > >> /www/so > >> lr/home1/quosa2-collection_shard2_replica1/data/index > >> lockFactory=org.apache.lucene.store.NativeFSLockFactory@7d5549ce; > >> maxCacheMB=48.0 > >> > maxMergeSizeMB=4.0),segFN=segments_19,generation=45,filenames=[segments_19] > >> > >> commit{dir=NRTCachingDirectory(org.apache.lucene.store.MMapDirectory@ > >> /www/so > >> lr/home1/quosa2-collection_shard2_replica1/data/index > >> lockFactory=org.apache.lucene.store.NativeFSLockFactory@7d5549ce; > >> maxCacheMB=48.0 > >> > maxMergeSizeMB=4.0),segFN=segments_1a,generation=46,filenames=[segments_1a] > >> 88354 [http-bio-8080-exec-3] INFO org.apache.solr.core.SolrCore > newest > >> commit = 46[segments_1a] > >> 88357 [http-bio-8080-exec-3] INFO > org.apache.solr.search.SolrIndexSearcher > >> Opening Searcher@775f6084 main > >> 88360 [http-bio-8080-exec-4] INFO org.apache.solr.core.SolrCore > >> SolrDeletionPolicy.onCommit: commits:num=2 > >> > >> commit{dir=NRTCachingDirectory(org.apache.lucene.store.MMapDirectory@ > >> /www/so > >> lr/home1/quosa2-collection_shard3_replica1/data/index > >> lockFactory=org.apache.lucene.store.NativeFSLockFactory@782256a2; > >> maxCacheMB=48.0 > >> > maxMergeSizeMB=4.0),segFN=segments_19,generation=45,filenames=[segments_19] > >> > >> commit{dir=NRTCachingDirectory(org.apache.lucene.store.MMapDirectory@ > >> /www/so > >> lr/home1/quosa2-collection_shard3_replica1/data/index > >> lockFactory=org.apache.lucene.store.NativeFSLockFactory@782256a2; > >> maxCacheMB=48.0 > >> > maxMergeSizeMB=4.0),segFN=segments_1a,generation=46,filenames=[segments_1a] > >> 88362 [http-bio-8080-exec-4] INFO org.apache.solr.core.SolrCore > newest > >> commit = 46[segments_1a] > >> 88363 [http-bio-8080-exec-4] INFO > org.apache.solr.search.SolrIndexSearcher > >> Opening Searcher@4a2415c5 main > >> 88364 [searcherExecutor-5-thread-1] INFO org.apache.solr.core.SolrCore > > >> QuerySenderListener sending requests to Searcher@4a2415c5 > >> main{StandardDirectoryReader(segments_19:1:nrt)} > >> 88365 [searcherExecutor-5-thread-1] INFO org.apache.solr.core.SolrCore > > >> QuerySenderListener done. > >> 88367 [searcherExecutor-5-thread-1] INFO org.apache.solr.core.SolrCore > > >> [quosa2-collection_shard3_replica1] Registered new searcher > >> Searcher@4a2415c5 main{StandardDirectoryReader(segments_19:1:nrt)} > >> 88367 [http-bio-8080-exec-4] INFO org.apache.solr.update.UpdateHandler > > >> end_commit_flush > >> 88368 [searcherExecutor-7-thread-1] INFO org.apache.solr.core.SolrCore > > >> QuerySenderListener sending requests to Searcher@775f6084 > >> main{StandardDirectoryReader(segments_19:1:nrt)} > >> 88368 [searcherExecutor-7-thread-1] INFO org.apache.solr.core.SolrCore > > >> QuerySenderListener done. > >> 88367 [http-bio-8080-exec-4] INFO > >> org.apache.solr.update.processor.LogUpdateProcessor > >> [quosa2-collection_shard3_replica1] webapp=/solr path=/update > >> > >> > params={waitSearcher=true&commit=true&wt=javabin&expungeDeletes=false&commit > >> _end_point=true&version=2&softCommit=false} {commit=} 0 33 > >> 88371 [http-bio-8080-exec-3] INFO org.apache.solr.update.UpdateHandler > > >> end_commit_flush > >> 88370 [searcherExecutor-7-thread-1] INFO org.apache.solr.core.SolrCore > > >> [quosa2-collection_shard2_replica1] Registered new searcher > >> Searcher@775f6084 main{StandardDirectoryReader(segments_19:1:nrt)} > >> 88376 [http-bio-8080-exec-3] INFO > >> org.apache.solr.update.processor.LogUpdateProcessor > >> [quosa2-collection_shard2_replica1] webapp=/solr path=/update > >> > >> > params={waitSearcher=true&commit=true&wt=javabin&expungeDeletes=false&commit > >> _end_point=true&version=2&softCommit=false} {commit=} 0 55 > >> 88379 [http-bio-8080-exec-2] INFO > >> org.apache.solr.update.processor.LogUpdateProcessor > >> [quosa2-collection_shard1_replica1] webapp=/solr path=/update/extract > >> params={commit=true&literal.id=pdf1} {commit=} 0 149 > >> > >> > >> When I try to add the file again, I get another error. > >> > >> SimplePostTool version 1.5 > >> Posting files to base url > >> > http://server:8080/solr/quosa2-collection/update/extract?literal.id=pdf1 > >> using content-type text/pdf.. > >> POSTing file 2008.Genomics.pdf > >> SimplePostTool: WARNING: Solr returned an error #500 Internal Server > Error > >> SimplePostTool: WARNING: IOException while reading response: > >> java.io.IOException: Server returned HTTP response code: 500 for URL: > >> > >> > http://ec2-54-228-131-56.eu-west-1.compute.amazonaws.com:8080/solr/quosa2-co > >> llection/update/extract?literal.id=pdf1 > >> 1 files indexed. > >> COMMITting Solr index changes to > >> > >> > http://ec2-54-228-131-56.eu-west-1.compute.amazonaws.com:8080/solr/quosa2-co > >> llection/update/extract?literal.id=pdf1.. > >> Time spent: 0:00:00.341 > >> > >> Error Log > >> > >> 731088 [http-bio-8080-exec-8] INFO > >> org.apache.solr.update.processor.LogUpdateProcessor > >> [quosa2-collection_shard1_replica1] webapp=/solr path=/update/extract > >> params={literal.id=pdf1} {} 0 170 > >> 731094 [http-bio-8080-exec-8] ERROR > >> org.apache.solr.servlet.SolrDispatchFilter > >> null:java.lang.RuntimeException: java.lang.NoClassDefFoundError: Could > not > >> initialize class org.apache.pdfbox.pdmodel.PDPage > >> at > >> > >> > org.apache.solr.servlet.SolrDispatchFilter.sendError(SolrDispatchFilter.java > >> :670) > >> at > >> > >> > org.apache.solr.servlet.SolrDispatchFilter.doFilter(SolrDispatchFilter.java: > >> 380) > >> at > >> > >> > org.apache.solr.servlet.SolrDispatchFilter.doFilter(SolrDispatchFilter.java: > >> 155) > >> at > >> > >> > org.apache.catalina.core.ApplicationFilterChain.internalDoFilter(Application > >> FilterChain.java:243) > >> at > >> > >> > org.apache.catalina.core.ApplicationFilterChain.doFilter(ApplicationFilterCh > >> ain.java:210) > >> at > >> > >> > org.apache.catalina.core.StandardWrapperValve.invoke(StandardWrapperValve.ja > >> va:222) > >> at > >> > >> > org.apache.catalina.core.StandardContextValve.invoke(StandardContextValve.ja > >> va:123) > >> at > >> > >> > org.apache.catalina.core.StandardHostValve.invoke(StandardHostValve.java:171 > >> ) > >> at > >> > >> > org.apache.catalina.valves.ErrorReportValve.invoke(ErrorReportValve.java:99) > >> at > >> > org.apache.catalina.valves.AccessLogValve.invoke(AccessLogValve.java:947) > >> at > >> > >> > org.apache.catalina.core.StandardEngineValve.invoke(StandardEngineValve.java > >> :118) > >> at > >> > org.apache.catalina.connector.CoyoteAdapter.service(CoyoteAdapter.java:408) > >> at > >> > >> > org.apache.coyote.http11.AbstractHttp11Processor.process(AbstractHttp11Proce > >> ssor.java:1009) > >> at > >> > >> > org.apache.coyote.AbstractProtocol$AbstractConnectionHandler.process(Abstrac > >> tProtocol.java:589) > >> at > >> > >> > org.apache.tomcat.util.net.JIoEndpoint$SocketProcessor.run(JIoEndpoint.java: > >> 310) > >> at > >> > >> > java.util.concurrent.ThreadPoolExecutor.runWorker(ThreadPoolExecutor.java:11 > >> 45) > >> at > >> > >> > java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:6 > >> 15) > >> at java.lang.Thread.run(Thread.java:722) > >> Caused by: java.lang.NoClassDefFoundError: Could not initialize class > >> org.apache.pdfbox.pdmodel.PDPage > >> at > org.apache.pdfbox.pdmodel.PDPageNode.getAllKids(PDPageNode.java:212) > >> at > org.apache.pdfbox.pdmodel.PDPageNode.getAllKids(PDPageNode.java:184) > >> at > >> > >> > org.apache.pdfbox.pdmodel.PDDocumentCatalog.getAllPages(PDDocumentCatalog.ja > >> va:211) > >> at > >> > org.apache.pdfbox.util.PDFTextStripper.writeText(PDFTextStripper.java:328) > >> at org.apache.tika.parser.pdf.PDF2XHTML.process(PDF2XHTML.java:72) > >> at org.apache.tika.parser.pdf.PDFParser.parse(PDFParser.java:153) > >> at > >> org.apache.tika.parser.CompositeParser.parse(CompositeParser.java:242) > >> at > >> org.apache.tika.parser.CompositeParser.parse(CompositeParser.java:242) > >> at > >> org.apache.tika.parser.AutoDetectParser.parse(AutoDetectParser.java:120) > >> at > >> > >> > org.apache.solr.handler.extraction.ExtractingDocumentLoader.load(ExtractingD > >> ocumentLoader.java:219) > >> at > >> > >> > org.apache.solr.handler.ContentStreamHandlerBase.handleRequestBody(ContentSt > >> reamHandlerBase.java:74) > >> at > >> > >> > org.apache.solr.handler.RequestHandlerBase.handleRequest(RequestHandlerBase. > >> java:135) > >> at > >> > >> > org.apache.solr.core.RequestHandlers$LazyRequestHandlerWrapper.handleRequest > >> (RequestHandlers.java:242) > >> at org.apache.solr.core.SolrCore.execute(SolrCore.java:1816) > >> at > >> > >> > org.apache.solr.servlet.SolrDispatchFilter.execute(SolrDispatchFilter.java:6 > >> 56) > >> at > >> > >> > org.apache.solr.servlet.SolrDispatchFilter.doFilter(SolrDispatchFilter.java: > >> 359) > >> ... 16 more > >> > >> 731110 [http-bio-8080-exec-9] INFO > org.apache.solr.update.UpdateHandler > >> start > >> > >> > commit{,optimize=false,openSearcher=true,waitSearcher=true,expungeDeletes=fa > >> lse,softCommit=false,prepareCommit=false} > >> 731143 [http-bio-8080-exec-9] INFO org.apache.solr.core.SolrCore > >> SolrDeletionPolicy.onCommit: commits:num=2 > >> > >> commit{dir=NRTCachingDirectory(org.apache.lucene.store.MMapDirectory@ > >> /www/so > >> lr/home1/quosa2-collection_shard1_replica1/data/index > >> lockFactory=org.apache.lucene.store.NativeFSLockFactory@7b2d9e10; > >> maxCacheMB=48.0 > >> > maxMergeSizeMB=4.0),segFN=segments_16,generation=42,filenames=[segments_16] > >> > >> commit{dir=NRTCachingDirectory(org.apache.lucene.store.MMapDirectory@ > >> /www/so > >> lr/home1/quosa2-collection_shard1_replica1/data/index > >> lockFactory=org.apache.lucene.store.NativeFSLockFactory@7b2d9e10; > >> maxCacheMB=48.0 > >> > maxMergeSizeMB=4.0),segFN=segments_17,generation=43,filenames=[segments_17] > >> 731144 [http-bio-8080-exec-9] INFO org.apache.solr.core.SolrCore > newest > >> commit = 43[segments_17] > >> 731145 [http-bio-8080-exec-9] INFO > >> org.apache.solr.search.SolrIndexSearcher > >> Opening Searcher@64148dd8 main > >> 731146 [searcherExecutor-6-thread-1] INFO > org.apache.solr.core.SolrCore > >> QuerySenderListener sending requests to Searcher@64148dd8 > >> main{StandardDirectoryReader(segments_15:9:nrt)} > >> 731147 [searcherExecutor-6-thread-1] INFO > org.apache.solr.core.SolrCore > >> QuerySenderListener done. > >> 731148 [searcherExecutor-6-thread-1] INFO > org.apache.solr.core.SolrCore > >> [quosa2-collection_shard1_replica1] Registered new searcher > >> Searcher@64148dd8 main{StandardDirectoryReader(segments_15:9:nrt)} > >> 731149 [http-bio-8080-exec-9] INFO > org.apache.solr.update.UpdateHandler > >> end_commit_flush > >> 731149 [http-bio-8080-exec-9] INFO > >> org.apache.solr.update.SolrCmdDistributor Distrib commit to:[StdNode: > >> http://10.234.215.24:8080/solr/quosa2-collection_shard1_replica3/, > >> StdNode: > >> http://10.229.125.163:8080/solr/quosa2-collection_shard2_replica1/, > >> StdNode: > >> http://10.234.215.24:8080/solr/quosa2-collection_shard2_replica3/, > >> StdNode: > >> http://10.229.125.163:8080/solr/quosa2-collection_shard3_replica1/, > >> StdNode: > >> http://10.234.215.24:8080/solr/quosa2-collection_shard3_replica3/] > >> > >> > params:commit_end_point=true&commit=true&softCommit=false&waitSearcher=true& > >> expungeDeletes=false > >> 731170 [http-bio-8080-exec-1] INFO > org.apache.solr.update.UpdateHandler > >> start > >> > >> > commit{,optimize=false,openSearcher=true,waitSearcher=true,expungeDeletes=fa > >> lse,softCommit=false,prepareCommit=false} > >> 731174 [http-bio-8080-exec-10] INFO > org.apache.solr.update.UpdateHandler > >> > >> start > >> > >> > commit{,optimize=false,openSearcher=true,waitSearcher=true,expungeDeletes=fa > >> lse,softCommit=false,prepareCommit=false} > >> 731191 [http-bio-8080-exec-1] INFO org.apache.solr.core.SolrCore > >> SolrDeletionPolicy.onCommit: commits:num=2 > >> > >> commit{dir=NRTCachingDirectory(org.apache.lucene.store.MMapDirectory@ > >> /www/so > >> lr/home1/quosa2-collection_shard3_replica1/data/index > >> lockFactory=org.apache.lucene.store.NativeFSLockFactory@782256a2; > >> maxCacheMB=48.0 > >> > maxMergeSizeMB=4.0),segFN=segments_1a,generation=46,filenames=[segments_1a] > >> > >> commit{dir=NRTCachingDirectory(org.apache.lucene.store.MMapDirectory@ > >> /www/so > >> lr/home1/quosa2-collection_shard3_replica1/data/index > >> lockFactory=org.apache.lucene.store.NativeFSLockFactory@782256a2; > >> maxCacheMB=48.0 > >> > maxMergeSizeMB=4.0),segFN=segments_1b,generation=47,filenames=[segments_1b] > >> 731192 [http-bio-8080-exec-1] INFO org.apache.solr.core.SolrCore > newest > >> commit = 47[segments_1b] > >> 731192 [http-bio-8080-exec-1] INFO > >> org.apache.solr.search.SolrIndexSearcher > >> Opening Searcher@49bbdad main > >> 731193 [searcherExecutor-5-thread-1] INFO > org.apache.solr.core.SolrCore > >> QuerySenderListener sending requests to Searcher@49bbdad > >> main{StandardDirectoryReader(segments_19:1:nrt)} > >> 731200 [searcherExecutor-5-thread-1] INFO > org.apache.solr.core.SolrCore > >> QuerySenderListener done. > >> 731202 [http-bio-8080-exec-10] INFO org.apache.solr.core.SolrCore > >> SolrDeletionPolicy.onCommit: commits:num=2 > >> > >> commit{dir=NRTCachingDirectory(org.apache.lucene.store.MMapDirectory@ > >> /www/so > >> lr/home1/quosa2-collection_shard2_replica1/data/index > >> lockFactory=org.apache.lucene.store.NativeFSLockFactory@7d5549ce; > >> maxCacheMB=48.0 > >> > maxMergeSizeMB=4.0),segFN=segments_1a,generation=46,filenames=[segments_1a] > >> > >> commit{dir=NRTCachingDirectory(org.apache.lucene.store.MMapDirectory@ > >> /www/so > >> lr/home1/quosa2-collection_shard2_replica1/data/index > >> lockFactory=org.apache.lucene.store.NativeFSLockFactory@7d5549ce; > >> maxCacheMB=48.0 > >> > maxMergeSizeMB=4.0),segFN=segments_1b,generation=47,filenames=[segments_1b] > >> 731202 [http-bio-8080-exec-10] INFO org.apache.solr.core.SolrCore > >> newest > >> commit = 47[segments_1b] > >> 731203 [http-bio-8080-exec-10] INFO > >> org.apache.solr.search.SolrIndexSearcher Opening Searcher@5ddf50femain > >> 731193 [http-bio-8080-exec-1] INFO > org.apache.solr.update.UpdateHandler > >> end_commit_flush > >> 731205 [searcherExecutor-7-thread-1] INFO > org.apache.solr.core.SolrCore > >> QuerySenderListener sending requests to Searcher@5ddf50fe > >> main{StandardDirectoryReader(segments_19:1:nrt)} > >> 731205 [searcherExecutor-7-thread-1] INFO > org.apache.solr.core.SolrCore > >> QuerySenderListener done. > >> 731207 [searcherExecutor-7-thread-1] INFO > org.apache.solr.core.SolrCore > >> [quosa2-collection_shard2_replica1] Registered new searcher > >> Searcher@5ddf50fe main{StandardDirectoryReader(segments_19:1:nrt)} > >> 731204 [searcherExecutor-5-thread-1] INFO > org.apache.solr.core.SolrCore > >> [quosa2-collection_shard3_replica1] Registered new searcher > >> Searcher@49bbdad > >> main{StandardDirectoryReader(segments_19:1:nrt)} > >> 731207 [http-bio-8080-exec-10] INFO > org.apache.solr.update.UpdateHandler > >> > >> end_commit_flush > >> 731208 [http-bio-8080-exec-10] INFO > >> org.apache.solr.update.processor.LogUpdateProcessor > >> [quosa2-collection_shard2_replica1] webapp=/solr path=/update > >> > >> > params={waitSearcher=true&commit=true&wt=javabin&expungeDeletes=false&commit > >> _end_point=true&version=2&softCommit=false} {commit=} 0 35 > >> 731210 [http-bio-8080-exec-1] INFO > >> org.apache.solr.update.processor.LogUpdateProcessor > >> [quosa2-collection_shard3_replica1] webapp=/solr path=/update > >> > >> > params={waitSearcher=true&commit=true&wt=javabin&expungeDeletes=false&commit > >> _end_point=true&version=2&softCommit=false} {commit=} 0 41 > >> 731216 [http-bio-8080-exec-9] INFO > >> org.apache.solr.update.processor.LogUpdateProcessor > >> [quosa2-collection_shard1_replica1] webapp=/solr path=/update/extract > >> params={commit=true&literal.id=pdf1} {commit=} 0 106 > >> > >> > >> Does anyone have any idea how to resolve this? > >> > >> Thanks in advance > >> > >> Mark > >> > >> > >> > >> > >> > >> -- > >> The Wellcome Trust Sanger Institute is operated by Genome Research > >> Limited, a charity registered in England with number 1021457 and a > >> company registered in England with number 2742969, whose registered > >> office is 215 Euston Road, London, NW1 2BE. > >> > >> > > > > -- > The Wellcome Trust Sanger Institute is operated by Genome Research > Limited, a charity registered in England with number 1021457 and a > company registered in England with number 2742969, whose registered > office is 215 Euston Road, London, NW1 2BE. >
