Hi Mark, This is a total shot in the dark, but does passing -Djava.awt.headless=true when you run the server help at all?
More on awt headless mode: http://www.oracle.com/technetwork/articles/javase/headless-136834.html Michael Della Bitta Applications Developer o: +1 646 532 3062 | c: +1 917 477 7906 appinions inc. “The Science of Influence Marketing” 18 East 41st Street New York, NY 10017 t: @appinions <https://twitter.com/Appinions> | g+: plus.google.com/appinions w: appinions.com <http://www.appinions.com/> On Fri, Jun 7, 2013 at 11:31 AM, Mark Wilson <m...@sanger.ac.uk> wrote: > Hi > > I am having an issue with adding pdf documents to a SolrCloud index I have > setup. > > I can index pdf documents fine using 4.3.0 on my local box, but I have a > SolrCloud instance setup on the Amazon Cloud (Using 2 servers) and I get > Error. > > It seems that it is not loading org.apache.pdfbox.pdmodel.PDPage. However, > the jar is in the directory, and referenced in the solrconfig.xml file > > <lib dir="/www/solr/lib/contrib/extraction/lib" regex=".*\.jar" /> > <lib dir="/www/solr/lib/" regex="solr-cell-\d.*\.jar" /> > > <lib dir="/www/solr/lib/contrib/clustering/lib/" regex=".*\.jar" /> > <lib dir="/www/solr/lib/" regex="solr-clustering-\d.*\.jar" /> > > <lib dir="/www/solr/lib/contrib/langid/lib/" regex=".*\.jar" /> > <lib dir="/www/solr/lib/" regex="solr-langid-\d.*\.jar" /> > > <lib dir="/www/solr/lib/contrib/velocity/lib" regex=".*\.jar" /> > <lib dir="/www/solr/lib/" regex="solr-velocity-\d.*\.jar" /> > > When I start Tomcat, I can see that the file has loaded. > > 2705 [coreLoadExecutor-4-thread-3] INFO > org.apache.solr.core.SolrResourceLoader Adding > 'file:/www/solr/lib/contrib/extraction/lib/pdfbox-1.7.1.jar' to classloader > > But when I try to add a document. > > java > -Durl= > http://ec2-blah-blaheu-west-1.compute.amazonaws.com:8080/solr/quosa2-c > ollection/update/extract -Dparams=literal.id=pdf1 -Dtype=text/pdf -jar > post.jar 2008.Genomics.pdf > > > I get this error. I¹m running on an Ubuntu machine. > > Linux ip-10-229-125-163 3.5.0-21-generic #32-Ubuntu SMP Tue Dec 11 18:51:59 > UTC 2012 x86_64 x86_64 x86_64 GNU/Linux > > Error log. > > 88168 [http-bio-8080-exec-1] INFO > org.apache.solr.update.processor.LogUpdateProcessor > [quosa2-collection_shard1_replica1] webapp=/solr path=/update/extract > params={literal.id=pdf1} {} 0 1534 > 88180 [http-bio-8080-exec-1] ERROR > org.apache.solr.servlet.SolrDispatchFilter > null:java.lang.RuntimeException: java.lang.UnsatisfiedLinkError: > /usr/lib/jvm/java-7-oracle/jre/lib/amd64/xawt/libmawt.so: libXrender.so.1: > cannot open shared object file: No such file or directory > at > > org.apache.solr.servlet.SolrDispatchFilter.sendError(SolrDispatchFilter.java > :670) > at > > org.apache.solr.servlet.SolrDispatchFilter.doFilter(SolrDispatchFilter.java: > 380) > at > > org.apache.solr.servlet.SolrDispatchFilter.doFilter(SolrDispatchFilter.java: > 155) > at > > org.apache.catalina.core.ApplicationFilterChain.internalDoFilter(Application > FilterChain.java:243) > at > > org.apache.catalina.core.ApplicationFilterChain.doFilter(ApplicationFilterCh > ain.java:210) > at > > org.apache.catalina.core.StandardWrapperValve.invoke(StandardWrapperValve.ja > va:222) > at > > org.apache.catalina.core.StandardContextValve.invoke(StandardContextValve.ja > va:123) > at > > org.apache.catalina.core.StandardHostValve.invoke(StandardHostValve.java:171 > ) > at > > org.apache.catalina.valves.ErrorReportValve.invoke(ErrorReportValve.java:99) > at > org.apache.catalina.valves.AccessLogValve.invoke(AccessLogValve.java:947) > at > > org.apache.catalina.core.StandardEngineValve.invoke(StandardEngineValve.java > :118) > at > org.apache.catalina.connector.CoyoteAdapter.service(CoyoteAdapter.java:408) > at > > org.apache.coyote.http11.AbstractHttp11Processor.process(AbstractHttp11Proce > ssor.java:1009) > at > > org.apache.coyote.AbstractProtocol$AbstractConnectionHandler.process(Abstrac > tProtocol.java:589) > at > > org.apache.tomcat.util.net.JIoEndpoint$SocketProcessor.run(JIoEndpoint.java: > 310) > at > > java.util.concurrent.ThreadPoolExecutor.runWorker(ThreadPoolExecutor.java:11 > 45) > at > > java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:6 > 15) > at java.lang.Thread.run(Thread.java:722) > Caused by: java.lang.UnsatisfiedLinkError: > /usr/lib/jvm/java-7-oracle/jre/lib/amd64/xawt/libmawt.so: libXrender.so.1: > cannot open shared object file: No such file or directory > at java.lang.ClassLoader$NativeLibrary.load(Native Method) > at java.lang.ClassLoader.loadLibrary1(ClassLoader.java:1939) > at java.lang.ClassLoader.loadLibrary0(ClassLoader.java:1864) > at java.lang.ClassLoader.loadLibrary(ClassLoader.java:1825) > at java.lang.Runtime.load0(Runtime.java:792) > at java.lang.System.load(System.java:1059) > at java.lang.ClassLoader$NativeLibrary.load(Native Method) > at java.lang.ClassLoader.loadLibrary1(ClassLoader.java:1939) > at java.lang.ClassLoader.loadLibrary0(ClassLoader.java:1864) > at java.lang.ClassLoader.loadLibrary(ClassLoader.java:1846) > at java.lang.Runtime.loadLibrary0(Runtime.java:845) > at java.lang.System.loadLibrary(System.java:1084) > at sun.security.action.LoadLibraryAction.run(LoadLibraryAction.java:67) > at sun.security.action.LoadLibraryAction.run(LoadLibraryAction.java:47) > at java.security.AccessController.doPrivileged(Native Method) > at java.awt.Toolkit.loadLibraries(Toolkit.java:1648) > at java.awt.Toolkit.<clinit>(Toolkit.java:1670) > at java.awt.Color.<clinit>(Color.java:275) > at org.apache.pdfbox.pdmodel.PDPage.<clinit>(PDPage.java:72) > at org.apache.pdfbox.pdmodel.PDPageNode.getAllKids(PDPageNode.java:212) > at org.apache.pdfbox.pdmodel.PDPageNode.getAllKids(PDPageNode.java:184) > at > > org.apache.pdfbox.pdmodel.PDDocumentCatalog.getAllPages(PDDocumentCatalog.ja > va:211) > at > org.apache.pdfbox.util.PDFTextStripper.writeText(PDFTextStripper.java:328) > at org.apache.tika.parser.pdf.PDF2XHTML.process(PDF2XHTML.java:72) > at org.apache.tika.parser.pdf.PDFParser.parse(PDFParser.java:153) > at > org.apache.tika.parser.CompositeParser.parse(CompositeParser.java:242) > at > org.apache.tika.parser.CompositeParser.parse(CompositeParser.java:242) > at > org.apache.tika.parser.AutoDetectParser.parse(AutoDetectParser.java:120) > at > > org.apache.solr.handler.extraction.ExtractingDocumentLoader.load(ExtractingD > ocumentLoader.java:219) > at > > org.apache.solr.handler.ContentStreamHandlerBase.handleRequestBody(ContentSt > reamHandlerBase.java:74) > at > > org.apache.solr.handler.RequestHandlerBase.handleRequest(RequestHandlerBase. > java:135) > at > > org.apache.solr.core.RequestHandlers$LazyRequestHandlerWrapper.handleRequest > (RequestHandlers.java:242) > at org.apache.solr.core.SolrCore.execute(SolrCore.java:1816) > at > > org.apache.solr.servlet.SolrDispatchFilter.execute(SolrDispatchFilter.java:6 > 56) > at > > org.apache.solr.servlet.SolrDispatchFilter.doFilter(SolrDispatchFilter.java: > 359) > ... 16 more > > 88234 [http-bio-8080-exec-2] INFO org.apache.solr.update.UpdateHandler > start > > commit{,optimize=false,openSearcher=true,waitSearcher=true,expungeDeletes=fa > lse,softCommit=false,prepareCommit=false} > 88268 [http-bio-8080-exec-2] INFO org.apache.solr.core.SolrCore > SolrDeletionPolicy.onCommit: commits:num=2 > > commit{dir=NRTCachingDirectory(org.apache.lucene.store.MMapDirectory@ > /www/so > lr/home1/quosa2-collection_shard1_replica1/data/index > lockFactory=org.apache.lucene.store.NativeFSLockFactory@7b2d9e10; > maxCacheMB=48.0 > maxMergeSizeMB=4.0),segFN=segments_15,generation=41,filenames=[segments_15] > > commit{dir=NRTCachingDirectory(org.apache.lucene.store.MMapDirectory@ > /www/so > lr/home1/quosa2-collection_shard1_replica1/data/index > lockFactory=org.apache.lucene.store.NativeFSLockFactory@7b2d9e10; > maxCacheMB=48.0 > maxMergeSizeMB=4.0),segFN=segments_16,generation=42,filenames=[segments_16] > 88268 [http-bio-8080-exec-2] INFO org.apache.solr.core.SolrCore newest > commit = 42[segments_16] > 88269 [http-bio-8080-exec-2] INFO org.apache.solr.search.SolrIndexSearcher > Opening Searcher@6175f8cb main > 88270 [searcherExecutor-6-thread-1] INFO org.apache.solr.core.SolrCore > QuerySenderListener sending requests to Searcher@6175f8cb > main{StandardDirectoryReader(segments_15:9:nrt)} > 88271 [searcherExecutor-6-thread-1] INFO org.apache.solr.core.SolrCore > QuerySenderListener done. > 88273 [searcherExecutor-6-thread-1] INFO org.apache.solr.core.SolrCore > [quosa2-collection_shard1_replica1] Registered new searcher > Searcher@6175f8cb main{StandardDirectoryReader(segments_15:9:nrt)} > 88273 [http-bio-8080-exec-2] INFO org.apache.solr.update.UpdateHandler > end_commit_flush > 88288 [http-bio-8080-exec-2] INFO > org.apache.solr.update.SolrCmdDistributor > Distrib commit to:[StdNode: > http://10.234.215.24:8080/solr/quosa2-collection_shard1_replica3/, > StdNode: > http://10.229.125.163:8080/solr/quosa2-collection_shard2_replica1/, > StdNode: > http://10.234.215.24:8080/solr/quosa2-collection_shard2_replica3/, > StdNode: > http://10.229.125.163:8080/solr/quosa2-collection_shard3_replica1/, > StdNode: > http://10.234.215.24:8080/solr/quosa2-collection_shard3_replica3/] > > params:commit_end_point=true&commit=true&softCommit=false&waitSearcher=true& > expungeDeletes=false > 88321 [http-bio-8080-exec-3] INFO org.apache.solr.update.UpdateHandler > start > > commit{,optimize=false,openSearcher=true,waitSearcher=true,expungeDeletes=fa > lse,softCommit=false,prepareCommit=false} > 88334 [http-bio-8080-exec-4] INFO org.apache.solr.update.UpdateHandler > start > > commit{,optimize=false,openSearcher=true,waitSearcher=true,expungeDeletes=fa > lse,softCommit=false,prepareCommit=false} > 88351 [http-bio-8080-exec-3] INFO org.apache.solr.core.SolrCore > SolrDeletionPolicy.onCommit: commits:num=2 > > commit{dir=NRTCachingDirectory(org.apache.lucene.store.MMapDirectory@ > /www/so > lr/home1/quosa2-collection_shard2_replica1/data/index > lockFactory=org.apache.lucene.store.NativeFSLockFactory@7d5549ce; > maxCacheMB=48.0 > maxMergeSizeMB=4.0),segFN=segments_19,generation=45,filenames=[segments_19] > > commit{dir=NRTCachingDirectory(org.apache.lucene.store.MMapDirectory@ > /www/so > lr/home1/quosa2-collection_shard2_replica1/data/index > lockFactory=org.apache.lucene.store.NativeFSLockFactory@7d5549ce; > maxCacheMB=48.0 > maxMergeSizeMB=4.0),segFN=segments_1a,generation=46,filenames=[segments_1a] > 88354 [http-bio-8080-exec-3] INFO org.apache.solr.core.SolrCore newest > commit = 46[segments_1a] > 88357 [http-bio-8080-exec-3] INFO org.apache.solr.search.SolrIndexSearcher > Opening Searcher@775f6084 main > 88360 [http-bio-8080-exec-4] INFO org.apache.solr.core.SolrCore > SolrDeletionPolicy.onCommit: commits:num=2 > > commit{dir=NRTCachingDirectory(org.apache.lucene.store.MMapDirectory@ > /www/so > lr/home1/quosa2-collection_shard3_replica1/data/index > lockFactory=org.apache.lucene.store.NativeFSLockFactory@782256a2; > maxCacheMB=48.0 > maxMergeSizeMB=4.0),segFN=segments_19,generation=45,filenames=[segments_19] > > commit{dir=NRTCachingDirectory(org.apache.lucene.store.MMapDirectory@ > /www/so > lr/home1/quosa2-collection_shard3_replica1/data/index > lockFactory=org.apache.lucene.store.NativeFSLockFactory@782256a2; > maxCacheMB=48.0 > maxMergeSizeMB=4.0),segFN=segments_1a,generation=46,filenames=[segments_1a] > 88362 [http-bio-8080-exec-4] INFO org.apache.solr.core.SolrCore newest > commit = 46[segments_1a] > 88363 [http-bio-8080-exec-4] INFO org.apache.solr.search.SolrIndexSearcher > Opening Searcher@4a2415c5 main > 88364 [searcherExecutor-5-thread-1] INFO org.apache.solr.core.SolrCore > QuerySenderListener sending requests to Searcher@4a2415c5 > main{StandardDirectoryReader(segments_19:1:nrt)} > 88365 [searcherExecutor-5-thread-1] INFO org.apache.solr.core.SolrCore > QuerySenderListener done. > 88367 [searcherExecutor-5-thread-1] INFO org.apache.solr.core.SolrCore > [quosa2-collection_shard3_replica1] Registered new searcher > Searcher@4a2415c5 main{StandardDirectoryReader(segments_19:1:nrt)} > 88367 [http-bio-8080-exec-4] INFO org.apache.solr.update.UpdateHandler > end_commit_flush > 88368 [searcherExecutor-7-thread-1] INFO org.apache.solr.core.SolrCore > QuerySenderListener sending requests to Searcher@775f6084 > main{StandardDirectoryReader(segments_19:1:nrt)} > 88368 [searcherExecutor-7-thread-1] INFO org.apache.solr.core.SolrCore > QuerySenderListener done. > 88367 [http-bio-8080-exec-4] INFO > org.apache.solr.update.processor.LogUpdateProcessor > [quosa2-collection_shard3_replica1] webapp=/solr path=/update > > params={waitSearcher=true&commit=true&wt=javabin&expungeDeletes=false&commit > _end_point=true&version=2&softCommit=false} {commit=} 0 33 > 88371 [http-bio-8080-exec-3] INFO org.apache.solr.update.UpdateHandler > end_commit_flush > 88370 [searcherExecutor-7-thread-1] INFO org.apache.solr.core.SolrCore > [quosa2-collection_shard2_replica1] Registered new searcher > Searcher@775f6084 main{StandardDirectoryReader(segments_19:1:nrt)} > 88376 [http-bio-8080-exec-3] INFO > org.apache.solr.update.processor.LogUpdateProcessor > [quosa2-collection_shard2_replica1] webapp=/solr path=/update > > params={waitSearcher=true&commit=true&wt=javabin&expungeDeletes=false&commit > _end_point=true&version=2&softCommit=false} {commit=} 0 55 > 88379 [http-bio-8080-exec-2] INFO > org.apache.solr.update.processor.LogUpdateProcessor > [quosa2-collection_shard1_replica1] webapp=/solr path=/update/extract > params={commit=true&literal.id=pdf1} {commit=} 0 149 > > > When I try to add the file again, I get another error. > > SimplePostTool version 1.5 > Posting files to base url > http://server:8080/solr/quosa2-collection/update/extract?literal.id=pdf1 > using content-type text/pdf.. > POSTing file 2008.Genomics.pdf > SimplePostTool: WARNING: Solr returned an error #500 Internal Server Error > SimplePostTool: WARNING: IOException while reading response: > java.io.IOException: Server returned HTTP response code: 500 for URL: > > http://ec2-54-228-131-56.eu-west-1.compute.amazonaws.com:8080/solr/quosa2-co > llection/update/extract?literal.id=pdf1 > 1 files indexed. > COMMITting Solr index changes to > > http://ec2-54-228-131-56.eu-west-1.compute.amazonaws.com:8080/solr/quosa2-co > llection/update/extract?literal.id=pdf1.. > Time spent: 0:00:00.341 > > Error Log > > 731088 [http-bio-8080-exec-8] INFO > org.apache.solr.update.processor.LogUpdateProcessor > [quosa2-collection_shard1_replica1] webapp=/solr path=/update/extract > params={literal.id=pdf1} {} 0 170 > 731094 [http-bio-8080-exec-8] ERROR > org.apache.solr.servlet.SolrDispatchFilter > null:java.lang.RuntimeException: java.lang.NoClassDefFoundError: Could not > initialize class org.apache.pdfbox.pdmodel.PDPage > at > > org.apache.solr.servlet.SolrDispatchFilter.sendError(SolrDispatchFilter.java > :670) > at > > org.apache.solr.servlet.SolrDispatchFilter.doFilter(SolrDispatchFilter.java: > 380) > at > > org.apache.solr.servlet.SolrDispatchFilter.doFilter(SolrDispatchFilter.java: > 155) > at > > org.apache.catalina.core.ApplicationFilterChain.internalDoFilter(Application > FilterChain.java:243) > at > > org.apache.catalina.core.ApplicationFilterChain.doFilter(ApplicationFilterCh > ain.java:210) > at > > org.apache.catalina.core.StandardWrapperValve.invoke(StandardWrapperValve.ja > va:222) > at > > org.apache.catalina.core.StandardContextValve.invoke(StandardContextValve.ja > va:123) > at > > org.apache.catalina.core.StandardHostValve.invoke(StandardHostValve.java:171 > ) > at > > org.apache.catalina.valves.ErrorReportValve.invoke(ErrorReportValve.java:99) > at > org.apache.catalina.valves.AccessLogValve.invoke(AccessLogValve.java:947) > at > > org.apache.catalina.core.StandardEngineValve.invoke(StandardEngineValve.java > :118) > at > org.apache.catalina.connector.CoyoteAdapter.service(CoyoteAdapter.java:408) > at > > org.apache.coyote.http11.AbstractHttp11Processor.process(AbstractHttp11Proce > ssor.java:1009) > at > > org.apache.coyote.AbstractProtocol$AbstractConnectionHandler.process(Abstrac > tProtocol.java:589) > at > > org.apache.tomcat.util.net.JIoEndpoint$SocketProcessor.run(JIoEndpoint.java: > 310) > at > > java.util.concurrent.ThreadPoolExecutor.runWorker(ThreadPoolExecutor.java:11 > 45) > at > > java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:6 > 15) > at java.lang.Thread.run(Thread.java:722) > Caused by: java.lang.NoClassDefFoundError: Could not initialize class > org.apache.pdfbox.pdmodel.PDPage > at org.apache.pdfbox.pdmodel.PDPageNode.getAllKids(PDPageNode.java:212) > at org.apache.pdfbox.pdmodel.PDPageNode.getAllKids(PDPageNode.java:184) > at > > org.apache.pdfbox.pdmodel.PDDocumentCatalog.getAllPages(PDDocumentCatalog.ja > va:211) > at > org.apache.pdfbox.util.PDFTextStripper.writeText(PDFTextStripper.java:328) > at org.apache.tika.parser.pdf.PDF2XHTML.process(PDF2XHTML.java:72) > at org.apache.tika.parser.pdf.PDFParser.parse(PDFParser.java:153) > at > org.apache.tika.parser.CompositeParser.parse(CompositeParser.java:242) > at > org.apache.tika.parser.CompositeParser.parse(CompositeParser.java:242) > at > org.apache.tika.parser.AutoDetectParser.parse(AutoDetectParser.java:120) > at > > org.apache.solr.handler.extraction.ExtractingDocumentLoader.load(ExtractingD > ocumentLoader.java:219) > at > > org.apache.solr.handler.ContentStreamHandlerBase.handleRequestBody(ContentSt > reamHandlerBase.java:74) > at > > org.apache.solr.handler.RequestHandlerBase.handleRequest(RequestHandlerBase. > java:135) > at > > org.apache.solr.core.RequestHandlers$LazyRequestHandlerWrapper.handleRequest > (RequestHandlers.java:242) > at org.apache.solr.core.SolrCore.execute(SolrCore.java:1816) > at > > org.apache.solr.servlet.SolrDispatchFilter.execute(SolrDispatchFilter.java:6 > 56) > at > > org.apache.solr.servlet.SolrDispatchFilter.doFilter(SolrDispatchFilter.java: > 359) > ... 16 more > > 731110 [http-bio-8080-exec-9] INFO org.apache.solr.update.UpdateHandler > start > > commit{,optimize=false,openSearcher=true,waitSearcher=true,expungeDeletes=fa > lse,softCommit=false,prepareCommit=false} > 731143 [http-bio-8080-exec-9] INFO org.apache.solr.core.SolrCore > SolrDeletionPolicy.onCommit: commits:num=2 > > commit{dir=NRTCachingDirectory(org.apache.lucene.store.MMapDirectory@ > /www/so > lr/home1/quosa2-collection_shard1_replica1/data/index > lockFactory=org.apache.lucene.store.NativeFSLockFactory@7b2d9e10; > maxCacheMB=48.0 > maxMergeSizeMB=4.0),segFN=segments_16,generation=42,filenames=[segments_16] > > commit{dir=NRTCachingDirectory(org.apache.lucene.store.MMapDirectory@ > /www/so > lr/home1/quosa2-collection_shard1_replica1/data/index > lockFactory=org.apache.lucene.store.NativeFSLockFactory@7b2d9e10; > maxCacheMB=48.0 > maxMergeSizeMB=4.0),segFN=segments_17,generation=43,filenames=[segments_17] > 731144 [http-bio-8080-exec-9] INFO org.apache.solr.core.SolrCore newest > commit = 43[segments_17] > 731145 [http-bio-8080-exec-9] INFO > org.apache.solr.search.SolrIndexSearcher > Opening Searcher@64148dd8 main > 731146 [searcherExecutor-6-thread-1] INFO org.apache.solr.core.SolrCore > QuerySenderListener sending requests to Searcher@64148dd8 > main{StandardDirectoryReader(segments_15:9:nrt)} > 731147 [searcherExecutor-6-thread-1] INFO org.apache.solr.core.SolrCore > QuerySenderListener done. > 731148 [searcherExecutor-6-thread-1] INFO org.apache.solr.core.SolrCore > [quosa2-collection_shard1_replica1] Registered new searcher > Searcher@64148dd8 main{StandardDirectoryReader(segments_15:9:nrt)} > 731149 [http-bio-8080-exec-9] INFO org.apache.solr.update.UpdateHandler > end_commit_flush > 731149 [http-bio-8080-exec-9] INFO > org.apache.solr.update.SolrCmdDistributor Distrib commit to:[StdNode: > http://10.234.215.24:8080/solr/quosa2-collection_shard1_replica3/, > StdNode: > http://10.229.125.163:8080/solr/quosa2-collection_shard2_replica1/, > StdNode: > http://10.234.215.24:8080/solr/quosa2-collection_shard2_replica3/, > StdNode: > http://10.229.125.163:8080/solr/quosa2-collection_shard3_replica1/, > StdNode: > http://10.234.215.24:8080/solr/quosa2-collection_shard3_replica3/] > > params:commit_end_point=true&commit=true&softCommit=false&waitSearcher=true& > expungeDeletes=false > 731170 [http-bio-8080-exec-1] INFO org.apache.solr.update.UpdateHandler > start > > commit{,optimize=false,openSearcher=true,waitSearcher=true,expungeDeletes=fa > lse,softCommit=false,prepareCommit=false} > 731174 [http-bio-8080-exec-10] INFO org.apache.solr.update.UpdateHandler > > start > > commit{,optimize=false,openSearcher=true,waitSearcher=true,expungeDeletes=fa > lse,softCommit=false,prepareCommit=false} > 731191 [http-bio-8080-exec-1] INFO org.apache.solr.core.SolrCore > SolrDeletionPolicy.onCommit: commits:num=2 > > commit{dir=NRTCachingDirectory(org.apache.lucene.store.MMapDirectory@ > /www/so > lr/home1/quosa2-collection_shard3_replica1/data/index > lockFactory=org.apache.lucene.store.NativeFSLockFactory@782256a2; > maxCacheMB=48.0 > maxMergeSizeMB=4.0),segFN=segments_1a,generation=46,filenames=[segments_1a] > > commit{dir=NRTCachingDirectory(org.apache.lucene.store.MMapDirectory@ > /www/so > lr/home1/quosa2-collection_shard3_replica1/data/index > lockFactory=org.apache.lucene.store.NativeFSLockFactory@782256a2; > maxCacheMB=48.0 > maxMergeSizeMB=4.0),segFN=segments_1b,generation=47,filenames=[segments_1b] > 731192 [http-bio-8080-exec-1] INFO org.apache.solr.core.SolrCore newest > commit = 47[segments_1b] > 731192 [http-bio-8080-exec-1] INFO > org.apache.solr.search.SolrIndexSearcher > Opening Searcher@49bbdad main > 731193 [searcherExecutor-5-thread-1] INFO org.apache.solr.core.SolrCore > QuerySenderListener sending requests to Searcher@49bbdad > main{StandardDirectoryReader(segments_19:1:nrt)} > 731200 [searcherExecutor-5-thread-1] INFO org.apache.solr.core.SolrCore > QuerySenderListener done. > 731202 [http-bio-8080-exec-10] INFO org.apache.solr.core.SolrCore > SolrDeletionPolicy.onCommit: commits:num=2 > > commit{dir=NRTCachingDirectory(org.apache.lucene.store.MMapDirectory@ > /www/so > lr/home1/quosa2-collection_shard2_replica1/data/index > lockFactory=org.apache.lucene.store.NativeFSLockFactory@7d5549ce; > maxCacheMB=48.0 > maxMergeSizeMB=4.0),segFN=segments_1a,generation=46,filenames=[segments_1a] > > commit{dir=NRTCachingDirectory(org.apache.lucene.store.MMapDirectory@ > /www/so > lr/home1/quosa2-collection_shard2_replica1/data/index > lockFactory=org.apache.lucene.store.NativeFSLockFactory@7d5549ce; > maxCacheMB=48.0 > maxMergeSizeMB=4.0),segFN=segments_1b,generation=47,filenames=[segments_1b] > 731202 [http-bio-8080-exec-10] INFO org.apache.solr.core.SolrCore > newest > commit = 47[segments_1b] > 731203 [http-bio-8080-exec-10] INFO > org.apache.solr.search.SolrIndexSearcher Opening Searcher@5ddf50fe main > 731193 [http-bio-8080-exec-1] INFO org.apache.solr.update.UpdateHandler > end_commit_flush > 731205 [searcherExecutor-7-thread-1] INFO org.apache.solr.core.SolrCore > QuerySenderListener sending requests to Searcher@5ddf50fe > main{StandardDirectoryReader(segments_19:1:nrt)} > 731205 [searcherExecutor-7-thread-1] INFO org.apache.solr.core.SolrCore > QuerySenderListener done. > 731207 [searcherExecutor-7-thread-1] INFO org.apache.solr.core.SolrCore > [quosa2-collection_shard2_replica1] Registered new searcher > Searcher@5ddf50fe main{StandardDirectoryReader(segments_19:1:nrt)} > 731204 [searcherExecutor-5-thread-1] INFO org.apache.solr.core.SolrCore > [quosa2-collection_shard3_replica1] Registered new searcher > Searcher@49bbdad > main{StandardDirectoryReader(segments_19:1:nrt)} > 731207 [http-bio-8080-exec-10] INFO org.apache.solr.update.UpdateHandler > > end_commit_flush > 731208 [http-bio-8080-exec-10] INFO > org.apache.solr.update.processor.LogUpdateProcessor > [quosa2-collection_shard2_replica1] webapp=/solr path=/update > > params={waitSearcher=true&commit=true&wt=javabin&expungeDeletes=false&commit > _end_point=true&version=2&softCommit=false} {commit=} 0 35 > 731210 [http-bio-8080-exec-1] INFO > org.apache.solr.update.processor.LogUpdateProcessor > [quosa2-collection_shard3_replica1] webapp=/solr path=/update > > params={waitSearcher=true&commit=true&wt=javabin&expungeDeletes=false&commit > _end_point=true&version=2&softCommit=false} {commit=} 0 41 > 731216 [http-bio-8080-exec-9] INFO > org.apache.solr.update.processor.LogUpdateProcessor > [quosa2-collection_shard1_replica1] webapp=/solr path=/update/extract > params={commit=true&literal.id=pdf1} {commit=} 0 106 > > > Does anyone have any idea how to resolve this? > > Thanks in advance > > Mark > > > > > > -- > The Wellcome Trust Sanger Institute is operated by Genome Research > Limited, a charity registered in England with number 1021457 and a > company registered in England with number 2742969, whose registered > office is 215 Euston Road, London, NW1 2BE. > >
