Re: [R] unable to get plot in R

2008-06-03 Thread Prof Brian Ripley
On Tue, 3 Jun 2008, Duncan Murdoch wrote: On 03/06/2008 6:53 PM, Chin-Cheng Su wrote: Hi everyone, I use R to plot my data set (x,y) in Windows XP, but keep getting error message like follows, ... plot(x, y) Error in windows() : unable to start device devWindows How can I solve this prob

Re: [R] R-2.7.0 make check failure

2008-06-03 Thread Prof Brian Ripley
This indicates a serious problem with your build (a segfault). Unfortunately as R is very well tested on Linux and we have never seen this one reported, we have no clue as to why. You've told us very little (what architecture, what compilers?) so although it seems to be something specific to y

[R] "ignoring environment value of R_HOME" error when installing packages

2008-06-03 Thread tub78
I am troubled by what appears to be a glitch in the current distribution, or in its installation on our system. I've traced it, and found a work- around. Is this normal? Is there a cleaner solution? The problem: During a package installation, the warning message "WARNING: ignoring environmen

Re: [R] merging two data sets with no column header

2008-06-03 Thread David Winsemius
Thanks for your reply. In your last step If I create a duplicate ( two similar records ) # create a duplicate vv[8,1] <- 7 vv[8,2]<-'g' and then I merge vv with vv2 ,both duplicates are merged. Is there a way to tell R to merge only the unique records. -- I don't think merge will do wha

Re: [R] how to automatically create objects with names from a string list?

2008-06-03 Thread Simon Blomberg
Or with mapply name <- c("foo", "bar", "baz") val <- 1:3 mapply(assign, name, val, pos=1) Cheers, Simon. On Tue, 2008-06-03 at 22:24 -0700, Moshe Olshansky wrote: > You can use either assign or eval. > > Something like > > > name <- c("foo", "bar", "baz") > > for (i in 1:length(name)) assign

Re: [R] how to automatically create objects with names from a string list?

2008-06-03 Thread Moshe Olshansky
You can use either assign or eval. Something like > name <- c("foo", "bar", "baz") > for (i in 1:length(name)) assign(name[i],i) --- On Wed, 4/6/08, Mark Farnell <[EMAIL PROTECTED]> wrote: > From: Mark Farnell <[EMAIL PROTECTED]> > Subject: [R] how to automatically create objects with names f

[R] how to automatically create objects with names from a string list?

2008-06-03 Thread Mark Farnell
Suppose I have a string of objects names: name <- c("foo", "bar", "baz") and I would like to use a for loop to automatically create three objects called "foo", "bar" and "baz" accordingly. Then how can this be done" (so that in the workspace, foo = 1, bar = 2 and baz=3) for (i in name) { ..

Re: [R] linear model in the repeated data type~

2008-06-03 Thread Moshe Olshansky
Try something like this: fits <- list(500) for (i in 1:500) { if (sum(table1$id == i) == 0) fits[[i]] <- NA else fits[[i]] <- lm(y~t,data=table1,subset=(id==i)) } --- On Wed, 4/6/08, Manli Yan <[EMAIL PROTECTED]> wrote: > From: Manli Yan <[EMAIL PROTECTED]> > Subject: [R] linear model in the re

Re: [R] linear model in the repeated data type~

2008-06-03 Thread Austin, Matt
How about library(nlme) allFits <- lmList(y ~ t|id, data=table1, pool=FALSE) or allFits <- by(table1, table1$id, function(x) lm(y ~ t, data=x)) Both ways store the results as a list, so you can access individual results using list extraction. --Matt -Original Message- From: [EMAIL

Re: [R] splitting data frame based on a criteria

2008-06-03 Thread ctu
Or ?gsummary Quoting Moshe Olshansky <[EMAIL PROTECTED]>: Also check ?aggregate --- On Wed, 4/6/08, Ingmar Visser <[EMAIL PROTECTED]> wrote: From: Ingmar Visser <[EMAIL PROTECTED]> Subject: Re: [R] splitting data frame based on a criteria To: "Marvin Lists" <[EMAIL PROTECTED]> Cc: r-help@r

[R] linear model in the repeated data type~

2008-06-03 Thread Manli Yan
here is the data: y<-c(5,2,3,7,9,0,1,4,5) id<-c(1,1,6,6,7,8,15,15,19) t<-c(50,56,50,56,50,50,50,60,50) table1<-data.frame(y,id,t)//longitudinal data what I want to do is to use the linear model for each id ,then get the estimate value,like: fit1<-lm(y~t,data=table1,subset=(id==1)) but ,you c

Re: [R] unable to get plot in R

2008-06-03 Thread Chin-Cheng Su
Please look at what I tried, > attach(my.data) > options(device="windows") > plot(x,y) Error in windows() : unable to start device devWindows > However, as i tried something else, it went like > options(device="devWindows") > plot(x,y) Error in plot.new() : no active or default device > Any id

[R] for loop or "by" group in EF function

2008-06-03 Thread Ingrid Tohver
Hello, I would like to apply the EF function (a goodness of fit test between predicted (ts2) and observed (Tw) values in the qualV package) to each of the Sites in my data frame. However, when I try the following script, R gives an error message that lists unused arguments, which include th

[R] code for automating the sem package

2008-06-03 Thread Gus Jespersen
Greetings, I am wondering if anyone has written programs to automate model fitting with the sem package, where one could specify a 'saturated' model and sequentially fit models with different combinations of parameters removed, while outputting fit data/parameters involved for each model. Than

Re: [R] Similar question about subsetting data

2008-06-03 Thread Jorge Ivan Velez
Dear William, Following Jim Holtman's solution to your previous post, you can do something similar to Bill <- 1:100 # test data Bill.p <- split(Bill, rep(1:10, each=10)) sapply(Bill.p, function(x) mean(x)/0.8) 1 2 3 4 5 6 7 8 9 10 6.875 19.

Re: [R] how to extract a specific group of data from a table?

2008-06-03 Thread Jorge Ivan Velez
Dear Manli, Try this: table1[table1$treatment=="low" & table1$size=="large",] HTH, Jorge On Tue, Jun 3, 2008 at 11:19 PM, Manli Yan <[EMAIL PROTECTED]> wrote: > a table with three varialbe:treatment > (low,high),size(large,small),response y > I want all response y with treatment=low and s

[R] how to extract a specific group of data from a table?

2008-06-03 Thread Manli Yan
a table with three varialbe:treatment (low,high),size(large,small),response y I want all response y with treatment=low and size=large, I try to write as : treatment<-c("low","low","high","high") size<-c("small","large","small","large") y<-c(1,2,4,5) table1<-data.frame(treatment,size,y) x=tab

Re: [R] help understanding why #function(x, y) (if((x-y)>=0) {2^(x-y)} else{-(2^abs(x-y))})# doesn't work like I think it should

2008-06-03 Thread Gabor Grothendieck
Try this: data.frame(x, y, folds = (x == y) + sign(x - y) * 2 ^ abs(x - y)) or replace data.frame with cbind if you prefer a matrix result. On Tue, Jun 3, 2008 at 9:47 PM, ALAN SMITH <[EMAIL PROTECTED]> wrote: > Hello R users and developers, > I am trying to write several functions (fairly new a

[R] Similar question about subsetting data

2008-06-03 Thread William Pepe
This is just a slight modification of a question I asked earlier. Thanks to all the responders. I have a data set(Bill) of with 1 variable (var1), with 100 obs that are in ascending order. I want to sample every 10 observations and save them in 10 different groups such as Group1 is obs 1-10

Re: [R] help understanding why #function(x, y) (if((x-y)>=0) {2^(x-y)} else{-(2^abs(x-y))})# doesn't work likeI think it should

2008-06-03 Thread Steven McKinney
Hi Alan, > -Original Message- > From: [EMAIL PROTECTED] on behalf of ALAN SMITH > Sent: Tue 6/3/2008 6:47 PM > To: r-help@r-project.org > Subject: [R] help understanding why #function(x,y) (if((x-y)>=0) {2^(x-y)} > else{-(2^abs(x-y))})# doesn't work likeI think it should > > Hello R use

Re: [R] help understanding why #function(x, y) (if((x-y)>=0) {2^(x-y)} else{-(2^abs(x-y))})# doesn't work like I think it should

2008-06-03 Thread Erik Iverson
Alan - ALAN SMITH wrote: Hello R users and developers, I am trying to write several functions (fairly new at this) in order to avoid using loops on large data frames (because they are slow). I wrote the function below and it seems to get hung on the first part of the if statement and then appli

Re: [R] help understanding why #function(x, y) (if((x-y)>=0) {2^(x-y)} else{-(2^abs(x-y))})# doesn't work like I think it should

2008-06-03 Thread Simon Blomberg
Use ifelse() rather than if () {} else {}. It's vectorized and very useful for applying to elements along vectors. The latter idiom is much better for control of flow in programs and functions. folds <- function (x, y) ifelse(x-y >= 0, 2^(x-y), -(2^abs(x-y))) z <- folds(x, y) > z [1] 161

Re: [R] (re-titled) help with "if".

2008-06-03 Thread Rolf Turner
This is an FAQ (although it doesn't seem to be listed in the official FAQs. The ``if'' command compares scalars (only, in effect). See ?"if" You need to use the ifelse() function: folds <- function(x,y) ifelse(x-y>=0,2^(x-y),-2^(y-x)) This if for illustrative purposes only. The foregoing

[R] column and row

2008-06-03 Thread Manli Yan
<-fit1$coefficients y.control y.lowy.high (Intercept)19.628713 21.883999 20.023814 log(1 + (age - 45)/10) -7.383725 -6.017342 -5.084431 here is my outcome,I need one vector say b1=first row without the intercept ,like:(19.628713, 21.883999, 20.023814) and

[R] help understanding why #function(x, y) (if((x-y)>=0) {2^(x-y)} else{-(2^abs(x-y))})# doesn't work like I think it should

2008-06-03 Thread ALAN SMITH
Hello R users and developers, I am trying to write several functions (fairly new at this) in order to avoid using loops on large data frames (because they are slow). I wrote the function below and it seems to get hung on the first part of the if statement and then applies that condition to rest of

Re: [R] Question about subsetting data

2008-06-03 Thread jim holtman
Will this do it for you: > Bill <- 1:100 # test data > # partition > Bill.p <- split(Bill, rep(1:10, each=10)) > Bill.p $`1` [1] 1 2 3 4 5 6 7 8 9 10 $`2` [1] 11 12 13 14 15 16 17 18 19 20 $`3` [1] 21 22 23 24 25 26 27 28 29 30 $`4` [1] 31 32 33 34 35 36 37 38 39 40 $`5` [1] 41 42 4

Re: [R] Question about subsetting data

2008-06-03 Thread Moshe Olshansky
One possibility is: x <- ceiling((1:100)/10) aggregate(var1,by=list(x),mean) --- On Wed, 4/6/08, William Pepe <[EMAIL PROTECTED]> wrote: > From: William Pepe <[EMAIL PROTECTED]> > Subject: [R] Question about subsetting data > To: r-help@r-project.org > Received: Wednesday, 4 June, 2008, 10:35 A

Re: [R] merge two data sets

2008-06-03 Thread Moshe Olshansky
Where do you want to place ID's which are in data2 but NOT in data1? --- On Wed, 4/6/08, kayj <[EMAIL PROTECTED]> wrote: > From: kayj <[EMAIL PROTECTED]> > Subject: [R] merge two data sets > To: r-help@r-project.org > Received: Wednesday, 4 June, 2008, 9:45 AM > I would like to merge “data1 “th

[R] Minimizing the negative log likelihood function...

2008-06-03 Thread François Aucoin
Hey, The following is a function I wrote which generates random variables from a Kappa (2-parameter) distribution. rkappa <- function(n,beta,alpha){ if(alpha <= 0) stop("alpha must be greater than zero!") if(beta <= 0) stop("beta must be greater than zero!") Vec <- beta*exp((1/alpha)*(log(

Re: [R] How to add space between main title to leave space for legend?

2008-06-03 Thread Paul Johnson
On Sat, May 31, 2008 at 2:45 PM, Peter Dalgaard <[EMAIL PROTECTED]> wrote: > Paul Johnson wrote: >> >> Hell > (1) par(xpd=TRUE) allows you to write outside the plotting region > > O__ Peter Dalgaard Øster Farimagsgade 5, Entr.B As usual, PD right on the money. Here's a working

[R] Question about subsetting data

2008-06-03 Thread William Pepe
I have a data set(Bill) of with 1 variable (var1), with 100 obs that are in ascending order. I want to sample every 10 observations and save them in 10 different groups such as Group1 is obs 1-10 Group 2 is obs-11-20 and so on. First step is to subset them into the 10 groups, then calc

Re: [R] unable to get plot in R

2008-06-03 Thread Duncan Murdoch
On 03/06/2008 6:53 PM, Chin-Cheng Su wrote: Hi everyone, I use R to plot my data set (x,y) in Windows XP, but keep getting error message like follows, ... plot(x, y) Error in windows() : unable to start device devWindows How can I solve this problem? Thanks for any suggestion or help. Som

Re: [R] Stacked barplot of timeseries data

2008-06-03 Thread Gabor Grothendieck
Here is a variation of the example below which uses your data. Paste this into an R session: Lines <- "19:08:15 %usr %nice %sys %idle 19:08:165 0 10 86 19:08:17 17 0 14 69 19:08:185 0 8 87 19:08:19 10 0 10 81 19:08:203

[R] Model simplification using anova()

2008-06-03 Thread ChCh
Hello all, I've become confused by the output produced by a call to anova(model1,model2). First a brief background. My model used to predict final tree height is summarised here: Df Sum Sq Mean Sq F valuePr(>F) Treatment 2 748.35 374.17 21.30

[R] merge two data sets

2008-06-03 Thread kayj
I would like to merge “data1 “that contains 100 unique ID’s with another data set “data 2” with 150 ID’s and the age of those individuals ( the ID in data1 is a subset of the ID in data 2) I would like to merge these data1 with data2 and have the result of the merge to have the ID ordered as in

Re: [R] IBM-AIX 5.2 (GCC 4.2.4 installed) - Error while executing 'make'

2008-06-03 Thread Senthilkumaran
Hi, Added "-Wl,-bnoquiet" in Makeconf and executed 'make'. The following error occured: gcc -std=gnu99 -I. -I../../../src/include -I../../../src/include -I/usr/local/include -DHAVE_CONFIG_H -mno-fp-in-toc -g -O2 -c Lapack.c -o Lapack.o gcc -std=gnu99 -Wl,-brtl -Wl,-G -Wl,-bex

Re: [R] 1501-511 Compilation failed for file ch2inv.f - R on AIX 5.2.

2008-06-03 Thread Senthilkumaran
Hi, Installed GCC 4.2.4 on IBM-AIX 5.2 and configured 'R' successfully. Although the below error was resolved after installing GCC 4.2.4, the 'make' failed in another step (related msg posted on June 03). Senthilkumaran wrote: > > Hi, > Thanks for the response.  > We do have a IBM XL Fortran

[R] unable to get plot in R

2008-06-03 Thread Chin-Cheng Su
Hi everyone, I use R to plot my data set (x,y) in Windows XP, but keep getting error message like follows, >... > plot(x, y) Error in windows() : unable to start device devWindows > How can I solve this problem? Thanks for any suggestion or help. CC _

Re: [R] How to solve a non-linear system of equations using R

2008-06-03 Thread Moshe Olshansky
Since k_i(l,m,s) are known constants, you actually have a system of four non-linear equations with 4 unknowns. One possibility is to use optim (check ?optim). Another one is to use the very recently released package - look at https://stat.ethz.ch/pipermail/r-help/attachments/20080423/da0b7f6c/

Re: [R] Stacked barplot of timeseries data

2008-06-03 Thread Achim Zeileis
On Tue, 3 Jun 2008, Demetri S. Mouratis wrote: Hi, I'm trying to plot time-series data where each sample breaks down the percentage of CPU time spent in each of four states (usr, nice, sys, idle) 19:08:15 %usr %nice %sys %idle 19:08:165 0 10 86 19:08:17 17 0

[R] Stacked barplot of timeseries data

2008-06-03 Thread Demetri S. Mouratis
Hi, I'm trying to plot time-series data where each sample breaks down the percentage of CPU time spent in each of four states (usr, nice, sys, idle) 19:08:15 %usr %nice %sys %idle 19:08:165 0 10 86 19:08:17 17 0 14 69 19:08:185 0 8 87

Re: [R] splitting data frame based on a criteria

2008-06-03 Thread Moshe Olshansky
Also check ?aggregate --- On Wed, 4/6/08, Ingmar Visser <[EMAIL PROTECTED]> wrote: > From: Ingmar Visser <[EMAIL PROTECTED]> > Subject: Re: [R] splitting data frame based on a criteria > To: "Marvin Lists" <[EMAIL PROTECTED]> > Cc: r-help@r-project.org > Received: Wednesday, 4 June, 2008, 5:11 A

Re: [R] JGR / linux

2008-06-03 Thread g-h-d
Dirk Eddelbuettel wrote: > > > On 3 June 2008 at 13:44, g-h-d wrote: > | > | > $ sudo apt-get install sun-java6-jdk > | > | > > | > | > $ sudo update-alternatives --config java > | > | > > | > | > There are 5 alternatives which provide `java'. > | > | > > | > | > Selection Alternative > | >

[R] IBM-AIX 5.2 (GCC 4.2.4 installed) - Error while executing 'make'

2008-06-03 Thread Senthilkumaran
Hi, The following error occurs while executing 'make' after the successful configuration (./configure) on IBM-AIX 5.2 (GCC 4.2.4 installed): gcc -std=gnu99 -I../../src/extra/zlib -I../../src/extra/bzip2 -I../../src/extra/pcre -I. -I../../src/include -I../../src/include -I/usr/local/in

Re: [R] merging two data sets with no column header

2008-06-03 Thread kayj
Thanks for your reply. In your last step If I create a duplicate ( two similar records ) # create a duplicate vv[8,1] <- 7 vv[8,2]<-'g' and then I merge vv with vv2 ,both duplicates are merged. Is there a way to tell R to merge only the unique records. Thanks and appreciate your help. --

Re: [R] probleme with R CMD check

2008-06-03 Thread Martin Maechler
> "c" == cgenolin <[EMAIL PROTECTED]> > on Wed, 04 Jun 2008 00:30:08 +0200 writes: c> I find the problem: the name of my base directory (the c> one that contain R, man and test) was not the same than c> the name of the package... Aha! c> I thaught this was allowed, I

Re: [R] R-2.7.0 rJava installation failure on x86_64

2008-06-03 Thread Nathan Coulter
> From: Nathan Coulter > > It looks like the command above could use /lib64/libc.so.6, but running "R > CMD > javareconf" shows that JNI linker flags don't contain any entry similar to > '-L/lib64': It turns out that /usr/lib64/libc.so is what is needed. I was able to install rJava after a

Re: [R] probleme with R CMD check

2008-06-03 Thread cgenolin
I find the problem: the name of my base directory (the one that contain R, man and test) was not the same than the name of the package... I thaught this was allowed, I guess I was wrong. Christophe "c" == cgenolin <[EMAIL PROTECTED]> on Tue, 03 Jun 2008 09:55:15 +0200 writes: >> pro

Re: [R] JGR / linux

2008-06-03 Thread Dirk Eddelbuettel
On 3 June 2008 at 13:44, g-h-d wrote: | > | > $ sudo apt-get install sun-java6-jdk | > | > | > | > $ sudo update-alternatives --config java | > | > | > | > There are 5 alternatives which provide `java'. | > | > | > | > Selection Alternative | > | > --

Re: [R] using function from specific packages

2008-06-03 Thread Gabor Grothendieck
zoo has a namespace and lag.zoo is not exported so zoo:::lag.zoo is how to access it directly. See help(":::") On Tue, Jun 3, 2008 at 4:31 PM, jiho.han <[EMAIL PROTECTED]> wrote: > > hello, useRs- > > i have a function that i wrote myself, for example, lag(x). however, when > i load 'zoo' pack

[R] Summarizing dummy coefficients in sem package

2008-06-03 Thread Gus Jespersen
Greetings, I am working in the sem package on a model with 3 exogenous variables (2 are nominal-categorical), and 4 endogenous, continuous variables. To use sem with the nominal variables, I created dummy variables. Now, in my sem output I have estimates for path coefficients for the relatio

Re: [R] JGR / linux

2008-06-03 Thread g-h-d
Dirk Eddelbuettel wrote: > > > On 3 June 2008 at 08:42, g-h-d wrote: > | I basically followed the steps in http://lib.stat.cmu.edu/R/CRAN/, and > those > | below for JGR and it worked. > | > | ...but there are problems with help files e.g. ?matrix generates the > | following message: > | > |

[R] R-2.7.0 make check failure

2008-06-03 Thread Gregory Ruchti
Hello, I am fairly new to using R and am trying to install it on my Linux machine, running Scientific Linux. I get through running 'configure' and 'make' OK, but when I run 'make check', I get the following error: make check make[1]: Entering directory `/home/gruchti/Programs/R-2.7.0/test

[R] using function from specific packages

2008-06-03 Thread jiho.han
hello, useRs- i have a function that i wrote myself, for example, lag(x). however, when i load 'zoo' packages and try to lag 'zoo' object, it gave me error. (R try to pass 'zoo' object into my function.) i typed 'lag.zoo' in R, but it can't find it. how can i access 'lag.zoo' function? and in

[R] A question about environments

2008-06-03 Thread David Vavra
I have been using separate environments to partition my data and functions into logical groups but I have been having an odd (to me) problem. To load and manipulate the data environments, I wrote a couple of small functions (see below). The problem seems to be that when I initially try to load the

Re: [R] How to solve a non-linear system of equations using R

2008-06-03 Thread ctu
Hi Jorge, Have you tried to use "systemfit" package. In this package, this is a function call " nlsystemfit ". This might help. Chunhao Quoting Jorge Ivan Velez <[EMAIL PROTECTED]>: Dear R-list members, I've had a hard time trying to solve a non-linear system (nls) of equations which st

[R] How to solve a non-linear system of equations using R

2008-06-03 Thread Jorge Ivan Velez
Dear R-list members, I've had a hard time trying to solve a non-linear system (nls) of equations which structure for the equation i, i=1,...,4, is as follows: f_i(d_1,d_2,d_3,d_4)-k_i(l,m,s) = 0(1) In the expression above, both f_i and k_i are known functions and l, m and s

Re: [R] adding column and pulling data from table

2008-06-03 Thread Peter Alspach
Paul It is not entirely clear to me what you want to do. However, if you are wanting to add row names then try row.names(dat) <- paste('g', 1:nrow(dat), sep='') First twenty rows of columns 1:3 are obtained by dat[1:20,1:3] Regarding putting all the points in a column onto a scatterplot. One

Re: [R] matlab eigs function in R

2008-06-03 Thread kayteck_master
Dear Thomas Yes, you're right. But I'm looking for this not only for computational cost reasons. eigen function from R has identical behavior to matlab function eig, but not to eigs. Even in matlab you can check that those function are not giving identical results. Here you have a short example

Re: [R] robust mlm in R?

2008-06-03 Thread John Fox
Dear Michael, I don't think that anyone else has suggested a fix, so here's one: snip --- # Mahalanobis Dsq for a matrix of variables dsq <- function(x, Sigma) { if (missing(Sigma)) Sigma <- cov(x, use="complete.obs") dev <- scale(x, scale=FALSE) # DSQ <- dev %*% solve(Si

Re: [R] splitting data frame based on a criteria

2008-06-03 Thread Ingmar Visser
?by may be helpful here eg if dat is your data.frame and yf is a factor (created using ifelse) use by(dat,yf,mean) to compute the means for each level of yf hth, Ingmar On Jun 3, 2008, at 8:37 PM, Marvin Lists wrote: Hi, I have a data frame that I want to split into two based on the values of

[R] adding column and pulling data from table

2008-06-03 Thread Paul Adams
Hello to everyone, I have a general question about how to add a column to a table.I have a table that has 62 columns and 2000 rows.I am wanting to add a column on the left most row.I am wanting to label the rows g1 to g2000 I have the code of ("g",c(1:nrow(dat)),sep="") for the right side of the

[R] splitting data frame based on a criteria

2008-06-03 Thread Marvin Lists
Hi, I have a data frame that I want to split into two based on the values of a variable in it. The variable Y has numeric values ranging between 0 through 70. I want to plot the frequencies of another variable X in two different cases: - When Y = 0 and - When Y > 0 How does one go about doing thi

Re: [R] JGR / linux

2008-06-03 Thread Dirk Eddelbuettel
On 3 June 2008 at 08:42, g-h-d wrote: | I basically followed the steps in http://lib.stat.cmu.edu/R/CRAN/, and those | below for JGR and it worked. | | ...but there are problems with help files e.g. ?matrix generates the | following message: | | /tmp/RtmpvxsnQa/.R/doc/html/packages.html (No such

[R] request: An array declarion problem

2008-06-03 Thread Muhammad Azam
Dear R users I tried a lot to solve the following problem but could not. I have two arrays having same order i.e 1 by 150. j=10; ss=150; r=array(0 , c( j , ss )); rr=array(0 , c( j , ss )); r1=array(0 , c( j-1 , ss )); r2=array(0 , c( j-1 , ss )); r3=array(0 , c( 2 , ss )) for(i in 1:j-1){

[R] R-2.7.0 rJava installation failure on x86_64

2008-06-03 Thread Nathan Coulter
attempting to install rJava on R-2.7.0, x86_64 platform, config.log shows the following error: configure:3880: checking whether JNI programs can be compiled configure:3898: gcc -m64 -std=gnu99 -o conftest -g -O2 -I/path/to/x86-64-linux/jdk-1.6.0_06/jre/../include conftes

Re: [R] matlab eigs function in R

2008-06-03 Thread Thomas Lumley
Presumably the original poster was looking for a function that would compute just the largest five eigenvalues and associated vectors, because that is enormously more efficient for a large matrix than computing all of them. eigen() computes all of them. One way to compute just a few is to use

[R] problems on plotting adjacent bars with barplot. Help request, please

2008-06-03 Thread Giacomo Prodi
hi ladyes and gentlemans of the R comunity. i have the following graphical issue: # say y is a matrix or a dataframe with dim(51,nrow=17),hence 3 columns; l<-51 # now the 3 colums represents 3 different aspects of my continuous variable (3 factors),plotted against a categorical one; n<-levels(fa

Re: [R] wildcard symbol or character

2008-06-03 Thread john.polo
Jorge Ivan Velez wrote: Dear John, Assuming that your information is in the list x, does substr(x,1,2) work for you? HTH, Jorge thanks for your reply Jorge. i will try substr(). john __ R-help@r-project.org mailing list https://stat.ethz.ch/mai

Re: [R] wildcard symbol or character

2008-06-03 Thread john.polo
Michael Dewey wrote: split() where the f variable = c("1E-*","1W-*","2E-*","2W-*","5E-*","5W-*","7E-*","7W-*","CE-*","CW-*"), but * doesn't work as a wildcard as i had hoped. can someone tell me the appropriate wildcard character/symbol to use, please Did you really use split()? yes, i did. t

[R] gam and prior

2008-06-03 Thread Paul Baverel
Hi. I am running a gam for covariate forward inclusions/ backward exclusions, using the weight options as follow. library(gam) gam.object1<-gam(ET~1, data=nonp.dat, weights=PROBA) summary(gam.object1) step.object1<-step.gam(gam.object1, direction="both" , trace=T,

Re: [R] 'asymmetric span' for 2D loess?

2008-06-03 Thread Tokuyasu, Taku
Dear Prof Ripley, > > Hello, > > > > I am interested in performing a 2D loess smooth on microarray data, i.e. > > log2 ratios on a 2D grid, using different spans in the horizontal and > > vertical directions (the immediate reason being that replicate spots are > > laid out in the horizontal direct

Re: [R] surprising predicting capabilities

2008-06-03 Thread Greg Snow
That is actually from August 2007 (typo in the fortunes package). If you do > RSiteSearch('Thou Shalt Not Even Think Graph Spreadsheet') Then it will bring up the actual post and you can read it in context (along with the posts that lead to it and those that followed). Basically, Ted was tryin

Re: [R] JGR / linux

2008-06-03 Thread g-h-d
Thanks. I basically followed the steps in http://lib.stat.cmu.edu/R/CRAN/, and those below for JGR and it worked. ...but there are problems with help files e.g. ?matrix generates the following message: /tmp/RtmpvxsnQa/.R/doc/html/packages.html (No such file or directory) g-h-d wrote: > > H

[R] surprising predicting capabilities

2008-06-03 Thread chaogai
Hi, I noticed the following fortune in R 2.7 and 2.6.2: fortune('Spreads') If anything, there should be a Law: Thou Shalt Not Even Think Of Producing A Graph That Looks Like Anything From A Spreadsheet. -- Ted Harding (in a discussion about producing graphics) R-help (August 2008) Jus

Re: [R] Swap variables in data.frame

2008-06-03 Thread Birgitle
Thanks might be easier in my case because I have so many variables. Could have found this solution on my own. Birgit Rogers, James A [PGRD Groton] wrote: > > > Birgit Lemcke wrote: > >> I have a dataframe and two of my variables are in the wrong position >> and I would like to swap those va

Re: [R] JGR / linux

2008-06-03 Thread Prof Brian Ripley
Your R is way too old: please follow the advice in the posting guide. I suspect the current JavaJD requires R >= 2.7.0 from the errors you are getting below. On Tue, 3 Jun 2008, g-h-d wrote: Hi all, i'm trying to install JGR on linux (see bottom), but it runs into errors. The bottom of the

Re: [R] matlab eigs function in R

2008-06-03 Thread David Winsemius
"Jorge Ivan Velez" <[EMAIL PROTECTED]> wrote in news:[EMAIL PROTECTED]: > Dear kayteck, > > Function eigen (see ?eigen) will do what you want. > > HTH, He had looked, but since eigen returns both eigenvalues and eigenvectors, and does so in a list, perhaps he needs advice about how to extrac

Re: [R] Rpart and case weights: working with functions

2008-06-03 Thread Xavier Robin
S Ellison a écrit : As a work-round, try something lik test.function <- function (formula.str, data) { weights <- rep(.1, 8) rpart(as.formula(formula.str), data, weights) } which works if formula.str is a string instead of a formula object. Ok, I think I got the point. The only problem

[R] JGR / linux

2008-06-03 Thread g-h-d
Hi all, i'm trying to install JGR on linux (see bottom), but it runs into errors. The bottom of the sequence below shows "JavaJD could not be found" Any suggestion, please? $ sudo apt-get install sun-java6-jdk $ sudo update-alternatives --config java There are 5 alternatives which provide `j

Re: [R] Cluster analysis with numeric and categorical variables

2008-06-03 Thread Christian Hennig
Dear Miha, a general way to do this is as follows: Define a distance measure by aggregating the Euclidean distance on the (X,Y)-space and the trivial 0-1 distance (0 if category is the same) on the categorial variable. Perform cluster analysis (whichever you want) on the resulting distance mat

Re: [R] transforming output of grid.locator() to coordinates of a leaf viewport

2008-06-03 Thread Wittner, Ben, Ph.D.
Paul, Thanks very much! Your example code below shows exactly how to do what I wanted. -Ben p.s., For the record, transRight <- current.transform() after the second call to pushViewport() seems to have gotten deleted from you example code below, but that was obvious. > -Original Message

Re: [R] matlab eigs function in R

2008-06-03 Thread Jorge Ivan Velez
Dear kayteck, Function eigen (see ?eigen) will do what you want. HTH, Jorge On Tue, Jun 3, 2008 at 5:42 AM, kayteck_master <[EMAIL PROTECTED]> wrote: > > Hello > > Does anybody know how one can compute d largest eigenvalues/eigenvectors in > R, like in MATLAB eigs function ? eigen function co

Re: [R] regsubsets - package(leaps)

2008-06-03 Thread Dieter Menne
Maura E Monville gmail.com> writes: > > Please, can someone suggest me where to find a description for the > attributes of the summary of "regsubsets", > that is: > "which" "rsq""rss""adjr2" "cp" "bic""outmat" "obj" ?? The docs say: "An object of class "regsubsets" containi

Re: [R] Swap variables in data.frame

2008-06-03 Thread Rogers, James A [PGRD Groton]
Birgit Lemcke wrote: > I have a dataframe and two of my variables are in the wrong position > and I would like to swap those variables. In addition to the other solutions posted, if you prefer to reference the columns by name rather than by index, you could use subset() dat <- data.frame(a =

[R] Cluster analysis with numeric and categorical variables

2008-06-03 Thread Miha Staut
Dear all, I would like to perform a clustering analysis on a data frame with two coordinate variables (X and Y) and a categorical variable where only a != b can be established. As far as I understood classification analyses, they are not an option as they partition the training set only in k c

Re: [R] Rpart and case weights: working with functions

2008-06-03 Thread S Ellison
A bit of fiddling suggests that the problem is less to do with rpart (which will quite happily acept weights defined inside a function) and more to do with the formula argument to the test function. This is probably because defining the formula in the global environment (as you implicitly do by pl

[R] predict arfima

2008-06-03 Thread A.N.
I noticed that both in the fArma and fracdiff packages it is not possible to predict an object fitted with an ARFIMA model. Moreover, the ox link is no more available. However, is it possible to find the coefficient d of differentiation of a time series, and then predict the time series by apply

Re: [R] wildcard symbol or character

2008-06-03 Thread Michael Dewey
At 03:07 03/06/2008, john.polo wrote: hello all, i want to split a list into smaller lists. the list looks like this: CW-W730 CW-W720 CW-W710 CW-W700 CW-W690 CW-W680 CW-W670 CW-W660 CE-W997 CE-W987 CE-W977 CE-W967 CE-W956 CE-W944 CE-W934 CE-W924 7W-W760 7W-W750 7W-967W-941

Re: [R] Rpart and case weights: working with functions

2008-06-03 Thread Prof Brian Ripley
'weights' should be a column in your 'data': that is the standard way to specify weights to a model-fitting function. On Tue, 3 Jun 2008, Xavier Robin wrote: I can't get rpart accept case weights defined inside a function. It keeps using the copy defined in the "global" environment (if they ex

[R] Problems using jri0.4-1 y R 2.7.0

2008-06-03 Thread Borja Soto Varela
Hello, this is the first time I send a mail to r-help mailing list. I'm developing a program in java with calls in R and I can`t use jri 0.4-1 with R 2.7 or 2.6 .but it runs with 2.4. The problem that I get when using the latest version of R is as follows: Cannot find JRI native library! Please

[R] matlab eigs function in R

2008-06-03 Thread kayteck_master
Hello Does anybody know how one can compute d largest eigenvalues/eigenvectors in R, like in MATLAB eigs function ? eigen function computes all eigenvectors/eigenvalues, and they are slightly different than those generated by matlab eigs. Thanks in advance -- View this message in context: htt

[R] mtable and plm

2008-06-03 Thread Emili Tortosa-Ausina
Dear all, I'm trying to generate latex-formatted tables for panel data regressions using the mtable function of the memisc package, which is quite good. I use the plm package for panel data regression. Unfortunately, it seems that mtable works very well when using either lm or glm, but it enc

[R] Rpart and case weights: working with functions

2008-06-03 Thread Xavier Robin
I can't get rpart accept case weights defined inside a function. It keeps using the copy defined in the "global" environment (if they exists) instead of the function-defined ones. Here is what I do: test.function <- function (formula, data) { weights <- rep(.1, 100) rpart(formula, data, we

Re: [R] probleme with R CMD check

2008-06-03 Thread Martin Maechler
> "c" == cgenolin <[EMAIL PROTECTED]> > on Tue, 03 Jun 2008 09:55:15 +0200 writes: >> provide commented, minimal, self-contained, reproducible code. >> Please do -- both -- c> Sorry... Usualy, I do... c> --- 8< c> userA <- function(x)x+1 c>

Re: [R] exit function in R?

2008-06-03 Thread Federico Abascal
Thank everybody for the answers! The stop and quit functions are what I need (it is a script, not a function what needs to be terminated. I was talking about an "exit" function, what can be confusing). Best, Federico Gregory. R. Warnes wrote: > > Since Frederico indeicated he was running a scrip

Re: [R] probleme with R CMD check

2008-06-03 Thread cgenolin
provide commented, minimal, self-contained, reproducible code. Please do -- both -- Sorry... Usualy, I do... --- 8< userA <- function(x)x+1 privateA <- function(x)x+2 .userB <- function(x)x+10 .privateB <- function(x)x+20 userC<- function(x)userA(privateA(x)) private

Re: [R] Odp: Aggregation and the meaning of class

2008-06-03 Thread Petr PIKAL
Hi Chip Maybe some more experienced users can direct you to proper source of information but in case of programming there are several books which can be of some use (I do not have any of them so its only my guess from their names). See items 1, 3 and 5 from CRAN Books page. Regards Petr [EM

[R] regsubsets - package(leaps)

2008-06-03 Thread Maura E Monville
Please, can someone suggest me where to find a description for the attributes of the summary of "regsubsets", that is: "which" "rsq""rss""adjr2" "cp" "bic""outmat" "obj" ?? Thank you so much. -- Maura E.M [[alternative HTML version deleted]] _

Re: [R] Need advise in grab the line number of sorted list in R

2008-06-03 Thread Philipp Pagel
On Tue, Jun 03, 2008 at 10:37:33AM +1000, Jason Lee wrote: > Hi, > > If there are more than one item having the same value, how can i use R to > take the average of the position. E.g:- > >X Y Z > 131 22.2 3.4 4.4 > 132 20.0 3.4 4.4==>Position 2 if queried > 150 20.0 12.2 4.5

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