Like Tomas, I find the paste0 readability to be **much** better, partly
because it allows for better indentation (as Tomas pointed out). Perhaps a
pointless email, but sometimes - for these subjective issues - it is
worthwhile to point out a difference in opinion.
Best,
Kasper
On Mon, Jun 2, 2025
Toby,
I know this is not what you're asking for, but when I build R from source
within a conda environment I make sure I use the conda compilers. I think
what you might be doing is using system compilers with conda libraries that
may have been built using a different compiler. Not saying this is
On Sat, Jun 3, 2023 at 11:51 AM Mikael Jagan wrote:
> The formals of the newly generic 'qr.X' are inherited from the non-generic
> function in the base namespace. Notably, the inherited default value of
> formal argument 'ncol' relies on lazy evaluation:
>
> > formals(qr.X)[["ncol"]]
>
On Tue, Mar 30, 2021 at 9:39 AM Tomas Kalibera
wrote:
> appropriate to tell valgrind about it. As this is becoming rather too
> technical and specific to the internals, feel free to take this offline
> with Simon and me.
>
Respectfully, this seems to me to be exactly the kind of exchange R-dev
to fix this.
>
> Thanks for your patience,
> Tomas
>
> On 10/30/20 11:24 AM, Kasper Daniel Hansen wrote:
> > I would like to request access to bugzilla to file a bug report on make
> > check for R-devel.
> >
> > Following changes to all.equal.POSIXt,
> >
I would like to request access to bugzilla to file a bug report on make
check for R-devel.
Following changes to all.equal.POSIXt,
make check
now reports an error if the environment variable TZ is set to
TZ="US/Eastern"
(and likely other values). This can be addressed by using the argument
chec
On Fri, Oct 23, 2020 at 11:10 AM Sebastian Meyer wrote:
> Yes, you are absolutely right and I'm pretty sure this will be fixed in
> one way or another.
>
> IMO, the failing test should simply use all.equal.POSIXt's new argument
> check.tzone=FALSE.
>
I agree that this is a simple fix and I am wo
an
error.
Best,
Kasper
On Fri, Oct 2, 2020 at 11:28 AM Kasper Daniel Hansen <
kasperdanielhan...@gmail.com> wrote:
> Yes, the potential issue I see is that
> make check
> fails when I explicitly set TZ. However, I set it to be the same as what
> the system reports when I login
and 'Europe/Berlin')"
>
>
> So as.POSIXlt() sets a 'tzone' attribute if TZ is set, but this
> behaviour is not new. Even with old R 3.6.3, I see
>
> > R-3.6.3 --vanilla --slave -e 'attr(as.POSIXlt(Sys.time()), "tzone")'
> [1] "&
The return value of Sys.time() today with a timezone of US/Eastern is
unchanged between 4.0.3-patched and devel, but on devel the following test
fails
all.equal(x, as.POSIXlt(x))
with
x = Sys.time()
This means that devel does not complete make tests (failure on
tests/reg-tests-2.R)
It is enti
ing
> CXX11=g++ so it is doing what you asked it to. Since the settings are
> inherited upwards, this implies that you are setting both CXX14 and CXX17
> to g++. So I’m not quite sure I understand your concern.
>
> Cheers,
> Simon
>
>
>
> > On Sep 3, 2019, at 9:02
I am trying to compile R under a new setup, and frankly, I have had a lot
of problems, but I think the stuff below points to a possible bug in R's
(custom) configure checks for C++11/14/17, but not for C++98.
This is a report about R from the R-3-6 branch, with a svn checkout from
today, revision
Dirk,
Thanks for the blog post on this, and the pointers in this email.
I have a question: it seems to me that you end up using a different
compiler for the package (quantreg) than was used to build R itself. As I
understand ABI changes, this is considered unsupported (ok, that depends on
what ve
on, Jan 21, 2019 at 3:09 PM Gabriel Becker
wrote:
> Kasper,
>
> If you're not interested or dont have time to create said patch yourself
> let me know and i can do it.
>
> Best,
> ~G
>
> On Mon, Jan 21, 2019, 11:36 AM Duncan Murdoch wrote:
>
>> On 21/01/2019
I see that base::pmax() does not support long vectors.
Is R-devel interested in reports like this; ie. is there a goal of full
support for long vectors in "basic" functions, something I at least would
greatly appreciate?
MRE:
> pmax(rep(1L, 3*10^9), 0)
Error in pmax(rep(1L, 3 * 10^9), 0) :
lo
ces is
the existence (or not) of pkgname/build/partial.rdb
Best,
Kasper
On Wed, Oct 4, 2017 at 10:12 AM, Kasper Daniel Hansen <
kasperdanielhan...@gmail.com> wrote:
> No, I do not get the same as you.
>
> I have tested with R-devel and R-patched compiled today. When I do
>
>
(C) 2017 The R Foundation for Statistical Computing
Platform: x86_64-apple-darwin16.7.0 (64-bit)
On Wed, Oct 4, 2017 at 3:56 AM, Kurt Hornik wrote:
> >>>>> Kasper Daniel Hansen writes:
>
> Interesting. When I take e.g. zTree as the last CRAN package using the
> \packageTitl
When I run R CMD Rd2pdf on the man pages of a package, ie
R CMD Rd2pdf man
I get
Converting Rd files to LaTeX Warning in parse_Rd("man/mpra-package.Rd",
encoding = "unknown", fragment = FALSE, :
man/mpra-package.Rd:6: unknown macro '\packageTitle'
Warning in parse_Rd("man/mpra-package.Rd", e
10:27 PM, Kasper Daniel Hansen wrote:
>
>> When I include the macros \packageAuthor, \packageDescription,
>> \packageTitle, \packageMaintainer in a XX-package.Rd file, R CMD Rd2pdf
>> fails with
>>
>> $ R CMD Rd2pdf mpra
>> Hmm ... looks like a package
>&g
When I include the macros \packageAuthor, \packageDescription,
\packageTitle, \packageMaintainer in a XX-package.Rd file, R CMD Rd2pdf
fails with
$ R CMD Rd2pdf mpra
Hmm ... looks like a package
Converting Rd files to LaTeX Error : mpra/man/mpra-package.Rd:6: file
'./DESCRIPTION' does not exist
T
Thanks, works for me.
Best,
Kasper
On Sat, May 20, 2017 at 9:35 AM, Martin Maechler wrote:
> >>>>> Kasper Daniel Hansen
> >>>>> on Fri, 19 May 2017 20:09:24 -0400 writes:
>
> > I rebuilt R with
> > export LC_CTYPE=en_US.UTF-8
>
not(identical(Sys.setlocale("LC_CTYPE", mbyte.lc), mbyte.lc))
> oloc
[1] "en_US.UTF-8"
> mbyte.lc
[1] "en_US.UTF-8"
On Fri, May 19, 2017 at 7:29 PM, Kasper Daniel Hansen <
kasperdanielhan...@gmail.com> wrote:
> On RedHat Enterprise Linux 6, the test belo
On RedHat Enterprise Linux 6, the test below fails (this is using the stock
GCC 4.4.7) from R-devel r72707. LC_CTYPE is unset when I run it, but
LANG=en_US.UTF-8
It also failed "yesterday" where as far as I recall the test code looked a
bit different.
Best,
Kasper
> ## Results differed by platf
ote:
>
>
> There is no way to control this at runtime.
> We will probably have to add a configure test.
>
> Best,
> Tomas
>
> On 05/04/2017 03:23 PM, Kasper Daniel Hansen wrote:
>
> Thanks.
>
> I assume there is no way to control this via. environment variables or
>
Kalibera
wrote:
>
> As a quick fix, you can undefine HAVE_CTANH in complex.c, somewhere after
> including config.h
> An internal substitute, which is implemented inside complex.c, will be
> used.
>
> Best
> Tomas
>
>
>
>
> On 05/04/2017 02:57 PM, Kasper Daniel Han
For a while I have been getting that the complex tests fails on RHEL 6.
The specific issue has to do with tanh (see below for full output from
complex.Rout.fail).
This is both with the stock compiler (GCC 4.4.7) and a compiler supplied
through the conda project (GCC 4.8.5). The compiler supplied
Have you benchmarked these potential drawbacks for your usecase? Eg. memory
depends on the structure of the identifies, given how R stores characters
internally.
Given all the issues raised here, I would 100% provide a script for reading
the data into R, if this is for distribution.
Best,
Kasper
On Mon, Oct 3, 2016 at 10:18 AM, wrote:
> Hi Kynn,
>
> Thanks for expanding.
>
> I wrote a function like yours when I first started using R. It's
> basically the same up to your "new.env()" line, I don't do anything
> with environmentns. I just called my function "mysource" and it's
> essentially
s, it seems to me like it
should be included in the package source by the package maintainer, perhaps
using a configure script, but that is ultimately something which is up to
the package maintainer.
Best,
Kasper
On Tue, Sep 27, 2016 at 10:52 AM, Eric Deveaud wrote:
> Le 27/09/16 à 16:17, Ka
As a package author, it is in my opinion irresponsible to override these
system settings (which is why it is also impossible). You have no idea
what system it is being deployed on, I mean, you don't even know if the
compiler is gcc. If a user wants (say) heavy optimization they will compile
R with
Martin, I fully agree. This becomes an issue when you have big matrices.
(Note that there are awesome methods for actually only computing a small
number of PCs (unlike your code which uses svn which gets all of them);
these are available in various CRAN packages).
Best,
Kasper
On Thu, Mar 24, 2
mclapply uses fork which is different from pthreads. As I understand it,
pthreads requires you to rewrite code, fork is a system call which takes
care of completely replicating the current state of the process.
Kasper
On Fri, Aug 14, 2015 at 5:00 PM, Henrik Bengtsson wrote:
> On Windows there
This is supported by the NEWS.Rd mechanism, but many authors don't use it.
I agree; it would be wonderful if everyone used it and I think the main
(potential) advantage of this thread is to make it used (both by developers
and users) more broadly.
Kasper
On Tue, Jun 2, 2015 at 11:42 AM, Michael D
being picked up).
Best,
Kasper
On Fri, Mar 27, 2015 at 11:19 AM, Kasper Daniel Hansen <
kasperdanielhan...@gmail.com> wrote:
> Related to this question:
>
> I have installed bzip2 1.0.6 by hand, but configure still fails. When I
> look at config.log I get the following
>
> c
Related to this question:
I have installed bzip2 1.0.6 by hand, but configure still fails. When I
look at config.log I get the following
configure:34150: /usr/bin/gcc -std=gnu99 -o conftest -g -O2 -march=amdfam10
-g -O2 -march=amdfam10 -L/usr/local/lib64 confte
st.c -lbz2 -lz -lrt -ldl -lm >&
In other words: this is a standard programming paradigm in R/S which
(unfortunately) is not widely known, based on my network. It is really
nice for developers.
Best,
Kasper
On Wed, Mar 18, 2015 at 5:42 PM, MacQueen, Don wrote:
> It's only an illusion until one actually tries providing a vecto
fortune candidate
On Mon, Feb 2, 2015 at 8:54 AM, peter dalgaard wrote:
>
> On 02 Feb 2015, at 04:08 , eigen wrote:
>
> > Thank you for your reply. Do you have any idea of how to get rid of the
> > errors? I tried Null function to calculate eigenvectors and nearPD to get
> > approximate positiv
Dan, for OS X, there is a new pcre library posted at
http://r.research.att.com/libs/ with a date stamp of Dec 28. This fixes
this problem. You can test for this by running
make check
post compilation. It'll bang out with a failure if this is not in order.
(And I know that all of this is descr
The best thing I have found is codetoolsBioC in the Bioconductor subversion
repository.
Best,
Kasper
On Fri, Nov 14, 2014 at 9:57 PM, Henrik Bengtsson
wrote:
> Hi,
>
> I'd like to list all package PkgA functions that another package PkgB
> use via Depends or Imports (ignoring Suggests for simpl
I have only skimmed this issue. But you check gsl version by compiling a
program with
#include
This assumes, as far as I can see, that gsl/gsl.h is in the search path (I
know, it is the wrong technical term) of the compiler, which may not be the
case for a non-standard installation. Above this c
Given the seeming need for automated submission to CRAN, perhaps the repos
maintainers could consider making a function available that allows one to
do so, for example
source("http://www.cran.r-project.org/submit_to_cran.R";)
submit_to_cran("PACKAGE.TARBALL", REQUIRED_ARGUMENTS)
or perhaps be i
Several packages in Bioconductor (and possibly CRAN) uses
SystemRequirements
in DESCRIPTION, but unless the user reads the DESCRIPTION file, this is for
naught. Still useful to some people I think.
Best,
Kasper
On Sun, Jul 13, 2014 at 9:13 PM, Greg Minshall wrote:
> hi. i'm working on a pa
I am not an expert on this, but I note that the section on -Wsequence-point
at
http://gcc.gnu.org/onlinedocs/gcc/Warning-Options.html
specifically mentions ? and :. Perhaps some more work on tracking down
their definitions and precedence might lead to insights.
Best,
Kasper
On Mon, Jun 23, 20
You're getting this message because you are using an undefined aspect of
++. Depending on compiler convention re. the interpretation of ++, your
code may be interpreted differently; ie. different compilers will interpret
the code differently. This is a bad thing.
You're presumably getting the wa
I have discovered that CITATION files now allow for bibentry objects and
supports printing in various formats.
For a package implementing methods described in >1 articles, it is nice to
have something like the following in the bibentry:
header = "If you're using feature X, please cite the foll
The Bioconductor project has a substantial amount of teaching material in
the form of Sweave files. For teaching, it can be extremely convenient to
give people an R script which they can copy and paste from (or do something
else with). This is especially true for inexperienced R users.
Best,
Kas
save(list = Objectout, file = filename)
On Wed, Apr 30, 2014 at 12:11 PM, Kamal wrote:
> Hi,
>
> I have a problem in renaming R object and saving them within a loop. For
> ex:
>
> for (i in 1:length(all_files))
> {
> uncov_GR <- "variable created in loop"
> fil
Our experience in Bioconductor is that this is a pretty hard problem.
What the OP presumably wants is some guarantee that all packages on CRAN
work well together. A good example is when Rcpp was updated, it broke
other packages (quick note: The Rcpp developers do a incredible amount of
work to de
You don't need this .onLoad anymore. Just Depends on methods and use
import(methods) (or perhaps be more specific) in NAMESPACE
Kasper
On Tue, Feb 4, 2014 at 7:13 PM, Roebuck,Paul L wrote:
> As I was running "R CMD check" on one of my older packages
> (matlab), I was attempting to fix one of t
This is a great comment if the primary use of the data is to make the data
available.
It is clear that a change in the internals of the class structure requires
changing the data package, and that is a clear drawback to my
recommendation. I have had to do this on several occasions.
One issue wit
This question is quite common in Bioconductor because of the extensive use
of S4 and because our data are often too big to stay within the size
requirements on software packages (we separate packages into software and
data, with size limits (5MB total size of final source tar ball) on
software, but
This is about the new note
Depends: includes the non-default packages:
BiocGenerics Biobase lattice reshape GenomicRanges
Biostrings bumphunter
Adding so many packages to the search path is excessive and importing
selectively is preferable.
Let us say my package A either uses a
R-exts, in "2.13 User-defined macros", discusses user-defined macros. Is
it possible to have macros defined in one file, be used by another (within
a package)? This would increase the usefulness substantially, IMHO.
Best,
Kasper
[[alternative HTML version deleted]]
On Sat, Sep 28, 2013 at 12:05 AM, Peter Langfelder <
peter.langfel...@gmail.com> wrote:
> On Fri, Sep 27, 2013 at 2:50 PM, Kasper Daniel Hansen
> wrote:
> > Peter,
> >
> > This is a relatively "new" warning from R CMD check (for some definition
> of
&
Peter,
This is a relatively "new" warning from R CMD check (for some definition of
new). The authors of Hmisc have clearly not yet gone through the process
of cleaning it up, as you are doing right now (and there are many other
packages that still need to address this, including several of mine).
Thanks a lot for the speedy fix.
It is a little unclear to me what "considers it to be a vignette" implies.
Re-reading R-exts, it is pretty clear on
vignettes, Sweave format
vignettes, non-Sweave
but a little unclear on
manuals, arbitrary format
except mentioning that they should go in /inst
It is stated in R-exts that Sweave files (.Rnw) are either processed in
/vignettes or /inst/doc, not both. Furthermore, it is stated that external
manuals and other files in /inst/doc will be installed.
This behaviour has been used to deal with the situation where a package has
two "vignettes", o
Well, it makes sense to me, since I have had the same issue.
Suppose you have two packages A and B. You would really like to import
both of them since it is too much work to figure out exactly which
functions you use, and you consider both of them fundamental to your own
work. So you would like
On Wed, Aug 28, 2013 at 3:22 PM, Duncan Murdoch wrote:
> On 28/08/2013 3:06 PM, Kasper Daniel Hansen wrote:
>
>> My point of view is that if you have a core package where you need access
>> to "hidden" functions for making a plugin, you should probably export
>>
My point of view is that if you have a core package where you need access
to "hidden" functions for making a plugin, you should probably export these
hidden functions in the first place. Chances are that if you need access
to these hidden functions (for expert use), other (expert) users might want
It seems that several people in this thread assumes that it is easy or even
possible to convince an author of a package to export a given function.
This is clearly not always true, partly because as an author you gain
additional work by doing this. The downsides to using ::: is really about
the p
On Thu, Aug 22, 2013 at 8:27 PM, Peter Meilstrup Using ::: on a package you
don't control can be more dangerous. For a
>
> package author to choose to export a function to the public interface
> represents at least some assurance that that interface will be stable or
> slow-moving. But there are no
Dan,
This error looks _very_ similar to what I reported regarding the use of
'foreach' inside a windows vignette, on the bioc-devel email list. As you
say, it looks funny that it lists the tex file, yet fails to find it.
The issue had to do with closing relevant connections (for foreach, this
wa
It is possible to list binaries in BinaryFiles and thereby excluded
them from R CMD check (although they are disallowed by CRAN).
I am interested in the same functionality, but for object files.
Background: in Rgraphviz, we (I) include pre-compiled object files for
use on Windows, because generati
This is not an R-devel question, so please do not reply to this list.
I would try
sapply(strsplit(loaded.topics$doc.id, "_"), function(xx) xx[1])
to get the MD part.
Kasper
On Mon, Feb 18, 2013 at 7:19 PM, bryan rasmussen
wrote:
> I have a table with a structure like the following:
>
> lang |
On Fri, Feb 15, 2013 at 1:25 PM, Joshua Ulrich wrote:
> On Fri, Feb 15, 2013 at 12:19 PM, Kasper Daniel Hansen
> wrote:
>> I build from svn daily and I have not had this problem. I build in a
>> tree separate from the source tree.
>>
>> I do think Hin-Tak has a
I build from svn daily and I have not had this problem. I build in a
tree separate from the source tree.
I do think Hin-Tak has a point about clearly specifying that this is
how you should do it, in the manual (if that has not already
happened). As a casual user, I would expect make clean to cle
eaming).
Additionally, right now I personally have a need for a login to a
Solaris machine. Some build problems with Rgraphviz has been reported
on Solaris and there is no way I can fix them without command line
access.
Best,
Kasper Daniel Hansen
Assistant Professor
McKusick-Nathans Instit
I use this all the time for similar reasons (but not on debian). I
currently post-process with chmod and chown. I support this request,
and I would be happy if the owner could be set as well.
Best,
Kasper
On Sun, Nov 25, 2012 at 4:57 PM, Dirk Eddelbuettel wrote:
>
> The R package on Debian (an
Dirk,
I set my user libraries in .Rprofile for this very reason. I agree it
is weird that .Renviron is not always read etc.
Kasper
On Thu, Oct 18, 2012 at 10:12 AM, Dirk Eddelbuettel wrote:
>
> Keith,
>
> On 18 October 2012 at 09:14, Keith Jewell wrote:
> | No reply in a number of hours, so he
bsseq is a Bioconductor package. I think the main issue here is that
CITATION has a volume field, like
bibentry("Article",
title = "{BSmooth: from whole genome bisulfite sequencing
reads to differentially methylated regions}",
author = personList(
person(c("Kasper", "D.
R-devel now gives a warning for a non-standard license (this may have
happened for a while).
In Rgraphviz we include the Graphviz source code, which is under
Eclipse. But the rest of the R package is under Artistic-2.0 or at
least contains code from past contributors which were licensed under
Art
or test suites. I certainly haven't.
>
> Duncan Murdoch
>
>
> On 05/09/2012 6:25 AM, Martin Maechler wrote:
>>
>> >>>>> Deepayan Sarkar
>> >>>>> on Wed, 5 Sep 2012 11:49:37 +0530 writes:
>>
>> > On Wed, Sep 5
On Wed, Sep 5, 2012 at 12:08 PM, Terry Therneau wrote:
> My biggest time offender is in the vignettes. After multiple readings of
> the docs I still can't quite figure out how to specify
> - pdf files that should be in the vignettes index, but are not .Rnw
> source
> - how to tel
On Tue, Sep 4, 2012 at 6:02 PM, Duncan Murdoch wrote:
> On 04/09/2012 5:42 PM, Dirk Eddelbuettel wrote:
>>
>> On 4 September 2012 at 17:26, Duncan Murdoch wrote:
>> | On 04/09/2012 5:14 PM, Dirk Eddelbuettel wrote:
>> | > An add-on argument to the already established option --as-cran may be
>> the
g.
>
> Duncan Murdoch
>
>
>>
>> Best,
>> John
>>
>> > -Original Message-
>> > From: r-devel-boun...@r-project.org [mailto:r-devel-bounces@r-
>> > project.org] On Behalf Of Kasper Daniel Hansen
>> > Sent: Tuesday, September
On Tue, Sep 4, 2012 at 4:53 PM, Warnes, Gregory
wrote:
>
> On 9/4/12 3:58 PM, "Duncan Murdoch" wrote:
>
>>On 04/09/2012 3:44 PM, Terry Therneau wrote:
>>>ly in
>>> On 09/04/2012 01:57 PM, Duncan Murdoch wrote:
>>> > On 04/09/2012 2:36 PM, Warnes, Gregory wrote:
>>> >> On 9/4/12 8:38 AM, "Duncan M
I am including an external piece of software in an R package. This
software ships with its own configure script generated by
autoconf/automake, and this script is being run as part of the package
configure script.
The package contains a file
m4/lt~obsolete.m4
which - as far as I can see - is a
You put it into a subdirectories of inst, like
PACKAGENAME/inst/extdata
which gets install to
PACKAGENAME/extdata
See R-extentions.
Kasper
On Fri, Aug 24, 2012 at 1:32 PM, David L Lorenz wrote:
> The utils package has a misc folder, and some other packages have
> folders that are not lis
On Fri, Aug 24, 2012 at 10:16 AM, Dirk Eddelbuettel wrote:
>
> On 24 August 2012 at 09:06, LIYING HUANG wrote:
> | We have several projects in the center done by researchers over years
> | in Fortran, there are copy right issues etc to prevent us from
> ^^^
You need to setup a Makevars.win and at lest modify
PKG_LIBS
and probably
PKG_FFLAGS
PKG_CFLAGS
depending on how you link to the DLL.
I suggest downloading example packages from Bioc / CRAN to look at.
Kasper
On Fri, Aug 24, 2012 at 9:06 AM, LIYING HUANG wrote:
>
> Hi,
>
> We have several p
On Sun, Jun 24, 2012 at 8:00 AM, John Nolan wrote:
> I did use the name Makevars.win, sorry for mistyping the name in my message
> as Makevar.win.
>
> I changed the extension on the library names from *.lib to *.a in the output
> below precisely to avoid complaints from this list; sorry for the
I am happy to report that R-devel (r59358) passes make check on my platform.
And sorry for the complete mixup today el4/el5 and 4.1.2 vs 4.2.1
Thanks,
Kasper
On Thu, May 17, 2012 at 11:09 AM, Prof Brian Ripley
wrote:
> On 17/05/2012 15:48, Kasper Daniel Hansen wrote:
>>
>> On Th
d I apologize for mixing up the red hat version. I am using EL 5.4.
FInally, while GCC 4.2 is pretty old, it is still the newest release
under GPL 2. And (more importantly to me), it is the system compiler
on our cluster.
Kasper
>
>
> On 17/05/2012 13:52, Kasper Daniel Hansen wrote:
&g
I have been building R-devel daily for years. In the last week or so,
R-devel has failed make check with the error in
tests/Examples/parallel-Ex.R
The specific error is
> pkgname <- "parallel"
> source(file.path(R.home("share"), "R", "examples-header.R"))
> options(warn = 1)
> library('parallel
On Mon, Apr 16, 2012 at 4:29 PM, baptiste auguie
wrote:
> Hi,
>
> Using range wouldn't help if you wanted to restrict one of the limits,
> not stretch it
>
> plot(1:11, y <- seq(-5, 5), ylim= range(0, y))
range(pmin(0,y))
Kasper
>
> baptiste
>
> On 17 April 2012 08:20, Greg Snow <538...@gmail.
Peter,
not all devices support transparency. My guess is that you are
plotting to a device which does not, but it is hard to know from your
email.
Kasper
On Mon, Feb 20, 2012 at 6:09 AM, Peter Ruckdeschel
wrote:
> Maybe I am missing something, but according to the help page
> to par (section
r R CMD check, which I forgot to mention in my
original post.
Kasper
> On 2012-01-15, at 7:43 AM, "Kasper Daniel Hansen"
> wrote:
>
> When I build a package containing a vignette, the package gets
> installed to build the vignette. However, it appears that R CMD build
&
When I build a package containing a vignette, the package gets
installed to build the vignette. However, it appears that R CMD build
does not allow for --configure-args. In my case, I have a C library
installed in a non-standard position, and I need to tell the package
where it is. It works fine
Roger,
Since Ripley is usually right, if I was you, I would focus on
"You need to ensure that GNU libiconv is actually used: you are
obviously not finding it, and I suspect your error is in not setting
the path to its header file."
Based on your description
"I've downloaded and compiled iconv v
On Fri, Nov 4, 2011 at 8:20 AM, peter dalgaard wrote:
>
> On Nov 4, 2011, at 13:11 , Rainer M Krug wrote:
>
>> Hi
>>
>> there seems to be an error in the documentation of the "merge" function:
>>
>> Arguments:
>>
>> x, y: data frames, or objects to be coerced to one.
>>
>> by, by.x, by.y: spec
Martin,
I am pretty sure (but I will probably be proven wrong) that when
r-announce was created it was stated that every email got sent to both
r-help and r-devel, and I see I have received emails from r-announce
in the past despite only being subscribed to r-devel and not r-help.
For example, I c
On Thu, Oct 6, 2011 at 1:19 PM, Terry Therneau wrote:
>
> On Thu, 2011-10-06 at 10:00 -0400, Kasper Daniel Hansen wrote:
>> if you're using two packages that both define a diag function/method
>> you absolutely _have_ to resolve this using your NAMESPACE. [Update:
>&g
Terry,
if you're using two packages that both define a diag function/method
you absolutely _have_ to resolve this using your NAMESPACE. [Update:
I see both are methods. I actually don't know what happens when you
have the same generic in both packages]
And yes, there is both an importClassesFro
On Tue, Aug 16, 2011 at 11:17 PM, Jonathan Malmaud wrote:
> Hi,
> My R package has files in the 'inst' directory that it needs to reference.
> How can the R scripts in my package find out the full path to the 'inst'
> directory after the package is installed, given that different users may have
Is there some functionality for NAMSPACE files where I can import a
package, except a couple of functions, something like
importExcept
The situation is that I import from two different packages, A and B .
A (Biobase) is quite big and I essentially want to import all of the
package. B (matrixSta
On Wed, Jul 6, 2011 at 9:42 AM, Duncan Murdoch wrote:
> On 11-07-06 9:25 AM, Kasper Daniel Hansen wrote:
>>
>> On Mon, Jul 4, 2011 at 8:08 AM, Prof Brian Ripley
>> wrote:
>>>
>>> In the near future all packages will have a name space. If the source
On Mon, Jul 4, 2011 at 8:08 AM, Prof Brian Ripley wrote:
> In the near future all packages will have a name space. If the sources do
> not contain one, a default NAMESPACE file will be added. This again will
> simplify the descriptions and also a lot of internal code. Maintainers of
> packages w
I am only reporting this because it is the current release branch and
not devel.
R-2.13 from svn revision 55957 builds fine, but fails make check.
This happened with a fresh svn checkout 12 hours ago and it still
happens as of now. Two days ago I could build R-2.13 and it passed
make check on the
On Sun, Apr 24, 2011 at 10:08 AM, Orin Richards wrote:
>
>
> Hello All,
> I heard of the First() function in R. but am not sure entirely how it is used.
> I would like to load an R package at startup, instead of having to manually
> load each time I run R. How is the first() function used to achi
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