Dan, This error looks _very_ similar to what I reported regarding the use of 'foreach' inside a windows vignette, on the bioc-devel email list. As you say, it looks funny that it lists the tex file, yet fails to find it.
The issue had to do with closing relevant connections (for foreach, this was a Windows issue because the default foreach backend on Windows uses connections). For my particular case, solving it was a bit difficult because I could not just close all connections since a vignette is being run inside sink(). The package name makes me suspect a database connection. As a starting point I suggest closing all existing connections in the vignette. Kasper On Fri, Apr 12, 2013 at 5:34 PM, Dan Tenenbaum <dtene...@fhcrc.org> wrote: > Hi, > Every day a few Bioconductor packages (different ones each day) fail > to build, on Windows only, with an error like this: > > D:\biocbld\bbs-2.13-bioc\meat>D:\biocbld\bbs-2.13-bioc\R\bin\R.exe CMD > build --keep-empty-dirs --no-resave-data OrganismDbi > [...] > Error in find_vignette_product(name, by = "texi2pdf", engine = engine) : > Failed to locate the 'texi2pdf' output file (by engine > 'utils::Sweave') for vignette with name 'OrganismDbi'. The following > files exists in directory '.': 'OrganismDbi.Rnw', 'OrganismDbi.tex', > 'databaseTypes.pdf' > Calls: <Anonymous> -> find_vignette_product > Execution halted > > This is puzzling to me because I would have thought that > 'OrganismDbi.tex' was the file it was looking for, yet it says that > file exists. > > These build errors are transient...if I re-run the build, the error > does not recur. So I was hesitant to report the problem because can't > be reproduced consistently. Nevertheless it is a problem. > > > sessionInfo() > R version 3.0.0 (2013-04-03) > Platform: i386-w64-mingw32/i386 (32-bit) > > locale: > [1] LC_COLLATE=English_United States.1252 > [2] LC_CTYPE=English_United States.1252 > [3] LC_MONETARY=English_United States.1252 > [4] LC_NUMERIC=C > [5] LC_TIME=English_United States.1252 > > attached base packages: > [1] stats graphics grDevices utils datasets methods base > > Thanks, > Dan > > ______________________________________________ > R-devel@r-project.org mailing list > https://stat.ethz.ch/mailman/listinfo/r-devel > [[alternative HTML version deleted]] ______________________________________________ R-devel@r-project.org mailing list https://stat.ethz.ch/mailman/listinfo/r-devel
