Re: [Rd] Plotmath on Fedora 31 broken with with pango >= 1.44 - workarounds?

Thanks Iñaki, that worked a treat. Gavin On Wed, 25 Mar 2020 at 04:28, Iñaki Ucar wrote: > > On Wed, 25 Mar 2020 at 01:14, Gavin Simpson wrote: > > > > Dear list > > > > On Fedora 31 the pango library has recently updated to version >= 1.44 > > an

[Rd] Plotmath on Fedora 31 broken with with pango >= 1.44 - workarounds?

the resulting reported bug on the RedHat Bugzilla: https://bugzilla.redhat.com/show_bug.cgi?id=1815128 Beyond switching to `type = 'Xlib'`, has anyone worked around this issue on a Fedora 31 or later system? Thanks in advance Gavin -- Gavin Simpson, PhD _

Re: [Rd] Update CRAN submission process

Patrick Perry > Assistant Professor > NYU Stern School of Business > > __ > R-devel@r-project.org mailing list > https://stat.ethz.ch/mailman/listinfo/r-devel -- Gavin Simpson, PhD ___

Re: [Rd] Request: making cutree S3 in R?

e HTML version deleted]] > > __________ > R-devel@r-project.org mailing list > https://stat.ethz.ch/mailman/listinfo/r-devel > -- Gavin Simpson, PhD [[alternative HTML version deleted]] __ R-devel@r-project.org mailing list https://stat.ethz.ch/mailman/listinfo/r-devel

Re: [Rd] NEWS.md support on CRAN

the NEWS: > > - a plain text NEWS file; following the GNU recommendations > - NEWS.Rd > - NEWS.md > > Would it not be more elegant to have e.g. roxygen2 generate NEWS.Rd? > (perhaps it is already possible, I'm not sure of that). I don't maintain > CRAN,

Re: [Rd] NEWS.md support on CRAN

On 4 June 2015 at 11:16, Duncan Murdoch wrote: > On 04/06/2015 1:09 PM, Prof Brian Ripley wrote: > >> On 04/06/2015 17:00, Gavin Simpson wrote: >> ... >> > 1. Markdown was designed to be as readable as possible in plain text >> format >> > (i.e. th

Re: [Rd] NEWS.md support on CRAN

is not as simple as plain text. G On 4 June 2015 at 11:09, Prof Brian Ripley wrote: > On 04/06/2015 17:00, Gavin Simpson wrote: > ... > >> 1. Markdown was designed to be as readable as possible in plain text >> format >> (i.e. the sources, not the rendered file). Ther

Re: [Rd] NEWS.md support on CRAN

gt;>>> those), so I'd suggest putting your news into a vignette > instead > > of a > > >> | >>>> news file. Put in a token news file that points to the > vignette > > so > > >> | >>>> users can find it. > > >> | >>> > > >> | >>>> Duncan Murdoch > > >> | >>> > > >> | >>>> __ > > >> | >>>> R-devel@r-project.org mailing list > > >> | >>>> https://stat.ethz.ch/mailman/listinfo/r-devel > > >> | >> > > >> | >> [[alternative HTML version deleted]] > > >> | >> > > >> | >> __ > > >> | >> R-devel@r-project.org mailing list > > >> | >> https://stat.ethz.ch/mailman/listinfo/r-devel > > >> | > > >> | > -- > > >> | > Peter Dalgaard, Professor, > > >> | > Center for Statistics, Copenhagen Business School > > >> | > Solbjerg Plads 3, 2000 Frederiksberg, Denmark > > >> | > Phone: (+45)38153501 > > >> | > Email: pd@cbs.dk Priv: pda...@gmail.com > > >> | > > >> | > __ > > >> | > R-devel@r-project.org mailing list > > >> | > https://stat.ethz.ch/mailman/listinfo/r-devel > > >> | > > >> | __ > > >> | R-devel@r-project.org mailing list > > >> | https://stat.ethz.ch/mailman/listinfo/r-devel > > >> > > > > > __ > > > R-devel@r-project.org mailing list > > > https://stat.ethz.ch/mailman/listinfo/r-devel > > > > __ > > R-devel@r-project.org mailing list > > https://stat.ethz.ch/mailman/listinfo/r-devel > > > > [[alternative HTML version deleted]] > > __ > R-devel@r-project.org mailing list > https://stat.ethz.ch/mailman/listinfo/r-devel > -- Gavin Simpson, PhD [[alternative HTML version deleted]] __ R-devel@r-project.org mailing list https://stat.ethz.ch/mailman/listinfo/r-devel

Re: [Rd] R_HOME default setting

} > > Without success. > Any idea? > which file has the R_HOME setting? > Thanks > Karim > > [[alternative HTML version deleted]] > > __ > R-devel@r-project.org mailing list > https://sta

Re: [Rd] error code 1 from Lapack routine 'dsyevr'

ject.org mailing list > > https://stat.ethz.ch/mailman/listinfo/r-devel > > > > [[alternative HTML version deleted]] > > ______ > R-devel@r-project.org mailing list > https://stat.ethz.ch/mailman/listinfo/r-devel > -- Gavin Simpson, PhD [[

Re: [Rd] timings for examples in R CMD check

uce equivalent > check files. on their example checks. > > This behavior is on R 3.1.0, 3.1.1, and R-devel. > > I would assume from the documentation that there should be a way to get a > clean check, without the timing diffs. > > Advice appreciated, > > Brian > >

Re: [Rd] Re R CMD check checking in development version of R

e analysis, the case for Depends is not as strong. In that > case, the official wisdom, AFAIK, is that Depends is not warranted. > > ~G > > > On Thu, Aug 28, 2014 at 11:43 AM, Gavin Simpson wrote: > >> I fully agree. >> >> This is how I have come to understand Depen

Re: [Rd] Re R CMD check checking in development version of R

t;Data is not information. Information is not knowledge. And knowledge > is certainly not wisdom." > Clifford Stoll > > > > > On Thu, Aug 28, 2014 at 7:39 AM, Simon Urbanek > wrote: > > > > On Aug 27, 2014, at 6:01 PM, Gavin Simpson wrote: > > > &

Re: [Rd] Re R CMD check checking in development version of R

On Aug 27, 2014 5:24 PM, "Hadley Wickham" > I'd say: Depends is a historical artefact from ye old days before > package namespaces. Apart from depending on a specific version of R, > you should basically never use depends. (The one exception is, as > mentioned in R-exts, if you're writing somethi

Re: [Rd] Re R CMD check checking in development version of R

an in DESCRIPTION. What I'm pushing back on is the notion that *no* packages should be in Depends. Cheers, G -- Gavin Simpson, PhD [[alternative HTML version deleted]] __ R-devel@r-project.org mailing list https://stat.ethz.ch/mailman/listinfo/r-devel

Re: [Rd] Re R CMD check checking in development version of R

On 27 August 2014 16:09, Dan Tenenbaum wrote: > - Original Message - > > From: "Gavin Simpson" > > To: "Hadley Wickham" > > Cc: r-devel@r-project.org > > Sent: Wednesday, August 27, 2014 3:01:53 PM > > Subject: Re: [Rd] Re R CMD che

Re: [Rd] Re R CMD check checking in development version of R

nds. Or am I thinking about this in the wrong way? Thanks again Gavin > > Hadley > > > -- > http://had.co.nz/ > -- Gavin Simpson, PhD [[alternative HTML version deleted]] __ R-devel@r-project.org mailing list https://stat.ethz.ch/mailman/listinfo/r-devel

[Rd] Re R CMD check checking in development version of R

what is the ideal solution in the view of R Core given this change to R CMD check. Thanks in advance Gavin -- Gavin Simpson, PhD [[alternative HTML version deleted]] __ R-devel@r-project.org mailing list https://stat.ethz.ch/mailman/listinfo/r-devel

Re: [Rd] Inconsistent handling of data frames in min(), max(), and mean()

l the Summary.data.frame methods as well. More comments in-line On 22 August 2014 02:23, Martin Maechler wrote: > >>>>> Gavin Simpson > >>>>> on Thu, 21 Aug 2014 12:32:31 -0600 writes: > > >> mean(df) > > [1] NA Warning messag

[Rd] Inconsistent handling of data frames in min(), max(), and mean()

n(as.matrix(df[, 1:2])) [1] 2.78366 > mean(df[,1:2]) [1] 2.78366 I just can't see the sense in having `mean` work the way it does now? Thanks, Gavin -- Gavin Simpson, PhD [[alternative HTML version deleted]] __ R-devel@r-project.org mailing list https://stat.ethz.ch/mailman/listinfo/r-devel

Re: [Rd] R CMD check for the R code from vignettes

On 2 June 2014 15:59, Duncan Murdoch wrote: > On 03/06/2014, 4:12 AM, Gavin Simpson wrote: > >> On 2 June 2014 11:44, Duncan Murdoch > <mailto:murdoch.dun...@gmail.com>> wrote: >> >> > Several of us have told you the real harm: it means that use

Re: [Rd] R CMD check for the R code from vignettes

ntaining some quality assurance, >>> which >>> I think of as an aid but not a debugging aid. >>> >>> I believe the CRAN maintainers have intentionally, and successfully, made >>> disabling the running of tangled code more trouble than it is generally >>> worth. Effectively, a package should have tangle code that runs without >>> errors. >>> >>> (Of course, I could be wrong about all this, it has happened before.) >>> >>> Paul >>> >> >> __ >> R-devel@r-project.org mailing list >> https://stat.ethz.ch/mailman/listinfo/r-devel >> >> > __ > R-devel@r-project.org mailing list > https://stat.ethz.ch/mailman/listinfo/r-devel > -- Gavin Simpson, PhD [[alternative HTML version deleted]] __ R-devel@r-project.org mailing list https://stat.ethz.ch/mailman/listinfo/r-devel

Re: [Rd] A bug in princomp(), perhaps?

ugh to remove the rows of `x’ with NAs. This is my main point. > > > > Ravi > > > > *From:* Gavin Simpson [mailto:ucfa...@gmail.com] > *Sent:* Friday, May 30, 2014 10:46 AM > *To:* Ravi Varadhan > *Cc:* peter dalgaard; r-devel@r-project.org > > *Subject:* R

Re: [Rd] A bug in princomp(), perhaps?

t; > __ > > R-devel@r-project.org mailing list > > https://stat.ethz.ch/mailman/listinfo/r-devel > > -- > Peter Dalgaard, Professor, > Center for Statistics, Copenhagen Business School Solbjerg Plads 3, 2000

[Rd] Bug in tools:::.check_package_depends ?

_suggests, check_incoming) : object 'bad3' not found Thanks in advance Gavin -- Gavin Simpson, PhD [[alternative HTML version deleted]] __ R-devel@r-project.org mailing list https://stat.ethz.ch/mailman/listinfo/r-devel

Re: [Rd] [RFC] A case for freezing CRAN

versions" isn't good enough in your eyes? Is it the lack of CRAN > provided binaries or the fact that the user has to proactively set up their > environment to replicate that of published results? > > In your XML example, it seems the problem was that the reproducer didn'

Re: [Rd] [RFC] A case for freezing CRAN

lieve that it would be more effective and would > ultimately benefit the entire R community (and not just the BioC > community) if this problem was addressed upstream. > > > H. > >> >> Best, >> -- >> Joshua Ulrich | about.me/joshuaulrich >> FOSS Tradi

Re: [Rd] [RFC] A case for freezing CRAN

t requires extra work by >>>> the >>>> third party, rather than extra work by the CRAN team. I don't think the >>>> total amount of work required is much different. I'm very unsympathetic >>>> to >>>> proposals to dump work on others. >>>> >>> >>> I am merely trying to discuss a technical issue in an attempt to improve >>> reliability of our software and reproducibility of papers created with R. >>> >>> [[alternative HTML version deleted]] >>> >>> __ >>> R-devel@r-project.org mailing list >>> https://stat.ethz.ch/mailman/listinfo/r-devel >>> >> >> __ >> R-devel@r-project.org mailing list >> https://stat.ethz.ch/mailman/listinfo/r-devel >> > > > > -- > Carl Boettiger > UC Santa Cruz > http://carlboettiger.info/ > > [[alternative HTML version deleted]] > > __ > R-devel@r-project.org mailing list > https://stat.ethz.ch/mailman/listinfo/r-devel -- Gavin Simpson, PhD __ R-devel@r-project.org mailing list https://stat.ethz.ch/mailman/listinfo/r-devel

Re: [Rd] ‘:::’ call

__ > R-devel@r-project.org mailing list > https://stat.ethz.ch/mailman/listinfo/r-devel -- Gavin Simpson, PhD __ R-devel@r-project.org mailing list https://stat.ethz.ch/mailman/listinfo/r-devel

Re: [Rd] Correct NAMESPACE approach when writing an S3 method for a generic in another package

lling `foo()` will result in an error. As long as the package containing the definition of the generic is not attached, there is no function `foo()` and hence the user gets an error. G On 26 August 2013 13:12, Paul Gilbert wrote: > > > On 13-08-26 12:04 PM, Gavin Simpson wrote: >>

Re: [Rd] Correct NAMESPACE approach when writing an S3 method for a generic in another package

port an imported object, but it has to be done via an > explicit export(), cf. "It is possible to export variables from a > namespace which it has imported from other namespaces: this has to be > done explicitly and not via exportPattern" [Writing R Extensions]. > > /H

Re: [Rd] Accessing the formals() of a non-exported method without :::?

By "...I had forgotten that a package can refer to any of *its own packages*" I of course meant "...I had forgotten that a package can refer to any of *its own functions*" Guess I should call it a night... G On 23 August 2013 21:49, Gavin Simpson wrote: > T

[Rd] Correct NAMESPACE approach when writing an S3 method for a generic in another package

possible I could get rid of both of these from Depends if I can solve the above issue. Thanks in advance. Gavin -- Gavin Simpson __ R-devel@r-project.org mailing list https://stat.ethz.ch/mailman/listinfo/r-devel

Re: [Rd] Accessing the formals() of a non-exported method without :::?

> On Aug 23, 2013, at 11:15, Gavin Simpson wrote: > >> Dear List, >> >> I'm in the process of making tweaks to my various R packages following >> changes in r-devel for package checks. I'm wondering about the one use >> of ::: in one of my packages. I a

[Rd] Accessing the formals() of a non-exported method without :::?

to get the formal arguments of a non-exported S3 method? Thanks. G -- Gavin Simpson __ R-devel@r-project.org mailing list https://stat.ethz.ch/mailman/listinfo/r-devel

Re: [Rd] Trouble building package using R in development

dant, although my experience from several hours working this through today suggests there is a difference between R --vanilla CMD check and R CMD check. G > Hadley > -- %~%~%~%~%~%~%~%~%~%~%~%~%~%~%~%~%~%~%~%~%~%~%~%~%~%~%~%~%~%~%~%~%~%~% Dr. Gavin Simpson [t] +44 (0)20 7679 0522

[Rd] R CMD check not reading R_LIBS from ~/.R/check.Renviron

[7] base -- %~%~%~%~%~%~%~%~%~%~%~%~%~%~%~%~%~%~%~%~%~%~%~%~%~%~%~%~%~%~%~%~%~%~% Dr. Gavin Simpson [t] +44 (0)20 7679 0522 ECRC, UCL Geography, [f] +44 (0)20 7679 0565 Pearson Building, [e] gavin.simpsonATNOSPAMucl.ac.uk Gower Street, London [w] http://www.ucl.ac.uk/~ucfagls/ UK. WC1E 6BT.

Re: [Rd] Trouble building package using R in development

here a bug here? All the best, Gavin [1] http://cran.r-project.org/doc/manuals/r-devel/R-exts.html#Checking-and-building-packages On Wed, 2013-01-16 at 16:05 +0100, Gavin Simpson wrote: > Dear List, > > I'm having considerable trouble setting up my environment (Linux, Fedora > 1

[Rd] Trouble building package using R in development

uilt before R 3.0.0: please re-install it ERROR: lazy loading failed for package ‘analogue’ * removing ‘/tmp/Rtmpctxbtv/Rinst30e3f762569/analogue’ --- ERROR: package installation failed Can anyone suggest where to go from here? TIA Gavin -- %~%~%~%~%

Re: [Rd] Rcmd_environ and R_LIBS_{USER,SITE}

> versioned path. > | > | > > | > | > FWIW, defaulting to a versioned path is (to this no-longer-bemused > user) as > | > | > much a permenent R bug (on Windoze) as the default installation into > a path > | > | > with spaces. > | > | > > | > | > Dirk > | > | > >

Re: [Rd] Why is there no within.environment function?

with environments. > > > > -- > > 4dpiecharts.com > > > > ______ > > R-devel@r-project.org mailing list > > https://stat.ethz.ch/mailman/listinfo/r-devel > __ > R-devel@r-project.org mai

[Rd] Controlling simplification in apply()?

there was I'd be happy to provide a first stab and contribute updated documentation. All the best, Gavin -- %~%~%~%~%~%~%~%~%~%~%~%~%~%~%~%~%~%~%~%~%~%~%~%~%~%~%~%~%~%~%~%~%~%~% Dr. Gavin Simpson [t] +44 (0)20 7679 0522 ECRC, UCL Geography, [f] +44 (0)20 7679 0565 Pe

Re: [Rd] requesting a new SIG mailing list

es of 'R-sig-ecology' for the > > year 2011, and I could only found one single mail related to hydrology: > > > > https://stat.ethz.ch/pipermail/r-sig-ecology/2011-July/002274.html > > > > (in the same search I couldn't find any single reference to hydrology in the

Re: [Rd] package DESCRIPTION file and CRAN Task View entries?

t; > > > > Jeff Hamann, PhD > PO Box 1421 > Corvallis, Oregon 97339-1421 > 541-754-2457 > jeff.hamann[at]forestinformatics[dot]com > jeff.d.hamann[at]gmail[dot]com > http://www.forestinformatics.com > http://en.wikipedia.org/wiki/Forest_informatics > >

Re: [Rd] round() ignores missing arguments if it is used inside another function where some arguments are missing.

C_NUMERIC=C > [5] LC_TIME=English_United Kingdom.1252 > > attached base packages: > [1] stats graphics grDevices utils datasets methods > [7] base > > loaded via a namespace (and not attached): > [1] tools_2.14.0 > -- %~%~%~%~%~%~%~%~%~%~%~%~%~%~%~%~%~%~%

Re: [Rd] readRDS and saveRDS

all the code that would inevitably break. G -- %~%~%~%~%~%~%~%~%~%~%~%~%~%~%~%~%~%~%~%~%~%~%~%~%~%~%~%~%~%~%~%~%~%~% Dr. Gavin Simpson [t] +44 (0)20 7679 0522 ECRC, UCL Geography, [f] +44 (0)20 7679 0565 Pearson Building, [e] gavin.simpsonATNOSPAMucl.ac.uk Gower Street, London [w]

Re: [Rd] methods() not listing some S3 plot methods...?

On Fri, 2011-08-26 at 07:06 -0700, Martin Morgan wrote: > On 08/26/2011 04:44 AM, Gavin Simpson wrote: > > Dear List, > > > > This may be related to this email thread initiated by Ben Bolker last > > month: https://stat.ethz.ch/pipermail/r-devel/2011-July/061630.htm

[Rd] methods() not listing some S3 plot methods...?

ched base packages: [1] stats graphics grDevices utils datasets methods base other attached packages: [1] mgcv_1.7-6 loaded via a namespace (and not attached): [1] grid_2.14.0lattice_0.19-33Matrix_0.9996875-3 nlme_3.1-102 [5] tools_2.14.0 -- %~%~%~%~%~%~%~%~%~%~%~%~%~%~%~%~%~%~%

Re: [Rd] Inconsistency between rowMeans documentation and reality?

oise. G >As they are written for speed, they blur over some of the subtleties >of ‘NaN’ and ‘NA’. > > So, given that (and that real NA is a specific NaN) I think it is > perfectly reasonable to claim they are consistent with mean. > > On Tue, 5 Apr 2011, Gavin Si

[Rd] Inconsistency between rowMeans documentation and reality?

e packages: [1] stats graphics grDevices utils datasets methods [7] base loaded via a namespace (and not attached): [1] tools_2.13.0 Thanks, Gavin -- %~%~%~%~%~%~%~%~%~%~%~%~%~%~%~%~%~%~%~%~%~%~%~%~%~%~%~%~%~%~%~%~%~%~% Dr. Gavin Simpson [t] +44 (0)20 7679 0522 ECR

Re: [Rd] Bug in tools::compactPDF() in 2.13-0-alpha

On Sun, 2011-03-27 at 09:00 -0400, Duncan Murdoch wrote: > On 11-03-27 8:48 AM, Gavin Simpson wrote: > > Dear List, > > > > There seems to be an bug in compactPDF() or at least an inconsistency > > with the documented behaviour. > > Thanks, looks easy to fix.

[Rd] Bug in tools::compactPDF() in 2.13-0-alpha

LC_TELEPHONE=C [11] LC_MEASUREMENT=en_GB.utf8 LC_IDENTIFICATION=C attached base packages: [1] tools stats graphics grDevices utils datasets [7] methods base Thanks, Gavin -- %~%~%~%~%~%~%~%~%~%~%~%~%~%~%~%~%~%~%~%~%~%~%~%~%~%~%~%~%~%~%~%~%~%~% Dr.

[Rd] rebuilding vignettes in 2.13-0-alpha fails if name of source dir is not package name

Calls: buildVignettes -> pkgVignettes Execution halted * checking PDF version of manual ... OK WARNING: There were 3 warnings, see ‘/home/gavin/work/R/packages/analogue/analogue_check/pkg.Rcheck/00check.log’ for details -- %~%~%~%~%~%~%~%~%~%~%~%~%~%~%~%~%~%~%~%~%~%~%~%~%~%~%~%~%~%~%~%~%~%~%

Re: [Rd] terribly annoying bug with POSIXlt : one o'clock is midnight?

"1970-01-01 01:00:00 BST" > as.POSIXlt(0,origin="1970-01-01", tz = "GMT") [1] "1970-01-01 GMT" > as.POSIXlt(0,origin="1970-01-01 00:00:00") [1] "1970-01-01 01:00:00 BST" > as.POSIXlt(0,origin="1970-01-01 00:00:00", tz = &

[Rd] Minor typo in influence.measures.Rd ?

mial)) signif(cooks.distance(lmI), 3)# ~= Ci in Table 3, p.184 ### Both are against the R svn trunk, r54122, and are attached, but may not make it through the mailing list filters. All the best, Gavin -- %~%~%~%~%~%~%~%~%~%~%~%~%~%~%~%~%~%~%~%~%~%~%~%~%~%~%~%~%~%~%~%~%~%~% Dr. Gavin Simpso

Re: [Rd] License statement

ALAND > > Phone: +64 9 923 5055, or +64 9 373 7599 ext 85055 > > Email: d.sc...@auckland.ac.nz, Fax: +64 9 373 7018 > > > > Director of Consulting, Department of Statistics > > > > ______ > > R-devel@r-project.o

Re: [Rd] possible bug in chron packages

he object returned by `chron` never gets stored or used on the object returned form `dates`. G > I would expect the outcome of both functions to be the same, or am I > overlooking something? > > Kind regards > Joris > -- %~%~%~%~%~%~%~%~%~%~%~%~%~%~%~%~%~%~%~%~%~%~%~%~%~%~%~%~%~%~

Re: [Rd] Reordering entries in package manual PDF's

R-devel@r-project.org mailing list > https://stat.ethz.ch/mailman/listinfo/r-devel -- %~%~%~%~%~%~%~%~%~%~%~%~%~%~%~%~%~%~%~%~%~%~%~%~%~%~%~%~%~%~%~%~%~%~% Dr. Gavin Simpson [t] +44 (0)20 7679 0522 ECRC, UCL Geography, [f] +44 (0)20 7679 0565 Pearson Building, [e]

Re: [Rd] [Rcpp-devel] GPL and R Community Policies (Rcpp)

mp; Software Consulting > > GKX Group, GKX Associates Inc. > > tel: 1-877-GKX-GROUP > > email: ggrothendieck at gmail.com > > > > [[alternative HTML version deleted]] > > ______ > R-devel@r-project.org mailing list > https://stat.ethz.ch/mailm

Re: [Rd] Decision tree and factor variables

decision tree. > > Any idea on how I should handle the problem? > Thanks. Wrong list. R-Devel is for discussion pertaining to development of and with R. You need R-Help. G -- %~%~%~%~%~%~%~%~%~%~%~%~%~%~%~%~%~%~%~%~%~%~%~%~%~%~%~%~%~%~%~%~%~%~% Dr. Gavin Simpson [t] +44

Re: [Rd] No RTFM?

list for comments/suggestions. IIRC this was how the original guide was produced. G -- %~%~%~%~%~%~%~%~%~%~%~%~%~%~%~%~%~%~%~%~%~%~%~%~%~%~%~%~%~%~%~%~%~%~% Dr. Gavin Simpson [t] +44 (0)20 7679 0522 ECRC, UCL Geography, [f] +44 (0)20 7679 0565 Pearson Building, [e] gavin.simpsonATNOSPAMucl.ac.uk Gower Street, Londo

Re: [Rd] How do you make a formal "feature" request?

eration or tell me how to do it. > > Thanks. > [[alternative HTML version deleted]] > > __ > R-devel@r-project.org mailing list > https://stat.ethz.ch/mailman/listinfo/r-devel -- %~%~%~%~%~%~%~%~%~%~%~%~%~%~%~%~%~%~%~%~%~%~%~%~%~%~%~%~%~%~%~%~%~%~%

Re: [Rd] One possible cause for incorrect symbols in X11() output

; > Standard Symbols L > > > > > ZapfDingbats > Dingbats > > > > > On Thu, 19 Aug 2010, Gavin Simpson wrote: > > > On Thu, 2010-08-19 at 07:55 +0100, Prof Brian Ripley wrote: > >> There have been spasmodic r

Re: [Rd] One possible cause for incorrect symbols in X11() output

uot;q" symbol being used in Evince etc in place of pch == 1. Am I inserting this incorrectly? Many thanks, G > > (This workaround was culled from > https://bugs.launchpad.net/ubuntu/+source/fontconfig/+bug/551977 > ) > -- %~%~%~%~%~%~%~%~%~%~%~%~%~%~%~%~%~%~%~%~%~%~%~%~%~%~%~%~%~%~%~%~%~%~% Dr. Gavin Simpson [t] +44 (0)20

Re: [Rd] Tips for debugging: R CMD check examples

(i.e. drop into a debugger on error). HTH G -- %~%~%~%~%~%~%~%~%~%~%~%~%~%~%~%~%~%~%~%~%~%~%~%~%~%~%~%~%~%~%~%~%~%~% Dr. Gavin Simpson [t] +44 (0)20 7679 0522 ECRC, UCL Geography, [f] +44 (0)20 7679 0565 Pearson Building, [e] gavin.simpsonATNOSPAMucl.ac.uk

Re: [Rd] [R] Prime Numbers Pkgs - Schoolmath is broken

On Tue, 2010-06-15 at 13:54 +0200, Peter Dalgaard wrote: > Gavin Simpson wrote: > > On Mon, 2010-06-14 at 07:16 -0700, Red Roo wrote: > > >> primes() and primlist are broken in Schoolmath pkg on CRAN. > >> My analysis can be found here http://j.mp/9BNI9q >

Re: [Rd] [R] Prime Numbers Pkgs - Schoolmath is broken

osting guide http://www.R-project.org/posting-guide.html > and provide commented, minimal, self-contained, reproducible code. -- %~%~%~%~%~%~%~%~%~%~%~%~%~%~%~%~%~%~%~%~%~%~%~%~%~%~%~%~%~%~%~%~%~%~% Dr. Gavin Simpson [t] +44 (0)20 7679 0522 ECRC, UCL Geography,

[Rd] SOLVED: Re: Standard non-standard evaluation problem with 2.10-0

ersion, and it was my mistake in using '[[' where I meant '['. All the best, Gavin On Tue, 2009-11-03 at 20:05 +, Gavin Simpson wrote: > Dear List > > I am getting an error when checking my analogue package with > R2.10.0-patched. The error comes when runni

[Rd] Standard non-standard evaluation problem with 2.10-0

1] stats graphics grDevices utils datasets methods [7] base other attached packages: [1] analogue_0.6-21 MASS_7.2-48 lattice_0.17-25 [4] vegan_1.15-3 loaded via a namespace (and not attached): [1] grid_2.10.0 tools_2.10.0 Thanks in advance, G -- %~%~%~%~%~%~%~%~%~%~%~%~%~%~%~%~%

Re: [Rd] eurodist example dataset is malformed

his in a clean session with an up-to-date R or R-Devel then send details of your R back to the list for further investigation. HTH G -- %~%~%~%~%~%~%~%~%~%~%~%~%~%~%~%~%~%~%~%~%~%~%~%~%~%~%~%~%~%~%~%~%~%~% Dr. Gavin Simpson [t] +44 (0)20 7679 0522 ECRC, UCL Geography, [f

Re: [Rd] Problem using model.frame with argument subset in own function

On Sun, 2009-08-09 at 11:32 -0500, Douglas Bates wrote: > On Sat, Aug 8, 2009 at 1:31 PM, Gavin Simpson wrote: > > Dear List, > > > I am writing a formula method for a function in a package I maintain. I > > want the method to return a data.frame that potentially only

[Rd] Problem using model.frame with argument subset in own function

Perhaps the question should be, how do I modify foo() to allow it to have a formal subset argument, passed to model.frame? Any other suggestions gratefully accepted. Thanks in advance, G -- %~%~%~%~%~%~%~%~%~%~%~%~%~%~%~%~%~%~%~%~%~%~%~%~%~%~%~%~%~%~%~%~%~%~% Dr. Gavin Simpson [t] +44 (

Re: [Rd] Bug in print.Arima and patch

And the same is attached, that implements your suggested change rather than the one I sent earlier. Cheers, G > > On Fri, 5 Jun 2009, Gavin Simpson wrote: > > > Dear List, > > > > A posting to R-Help exposed this problem with the print method for > > objects

[Rd] Bug in print.Arima and patch

x$var.coef)) { ses <- rep(0, length(coef)) ses[x$mask] <- round(sqrt(diag(x$var.coef)), digits = digits) coef <- matrix(coef, 1L, dimnames = list(NULL, names(coef))) HTH G -- %~%~%~%~%~%~%~%~%~%~%~%~%~%~%~%~%~%~%~%~%~%~%~%~%~%~%~%~%~%~%~%~%~%~

Re: [Rd] Bug in base function sample ( ) (PR#13727)

t; length(ggtrack) > hist(ggtrack) > > > Highest Regards, > Michael Chajewski > > __ > R-devel@r-project.org mailing list > https://stat.ethz.ch/mailman/listinfo/r-devel -- %~%~%~%~%~%~%~%~%~%~%~%~%~%~%~%~%~%~%~%~%~%~%~%~%~%~%~%~%~%~%~%~%~%~% Dr. Gavin Simpson [

Re: [Rd] Improve aggregate.default ...?

using `$`, prefering with(), I don't run the risk of non syntactic names being produced. I was really looking for ideas for improving aggregate.default in general. The solution I posted has its own infelicities... Cheers, G > > On Sat, May 9, 2009 at 8:14 AM, Gavin Simpson wrote: &g

[Rd] Improve aggregate.default ...?

vectors > res$`dat$A` [1] 0.4269715 0.5479352 0.5091543 0.4926412 Is there a way of coming up with a better way to name the aggregated variable? Would a change of this kind be something R Core would consider making to aggregate.default if a good solution is found? Thanks in advance, G --

Re: [Rd] [R] pdf() and pch problems

On Thu, 2009-01-22 at 15:08 +, Brian D Ripley wrote: > On Thu, 22 Jan 2009, Gavin Simpson wrote: > > > On Thu, 2009-01-22 at 15:21 +0100, Martin Maechler wrote: > >>>>>>> "TZ" == T Zumbrunn > >>>>>>> on Thu, 22 Ja

Re: [Rd] [R] pdf() and pch problems

61 (self) > >> 1 South Parks Road, +44 1865 272866 (PA) > >> Oxford OX1 3TG, UKFax: +44 1865 272595 > >> > >> __ > >> r-h...@r-project.org mailing list >

Re: [Rd] Missing links on Windows and \link[bar]{foo}; clarification

f the reasons I was going through my Rd files was to fix-up some problems with the mark-up that the new parser identified. Some changes I made (not related to the parser version 2 warnings) triggered these warnings on R-Forge. All the best, Gavin > > On Tue, 13 Jan 2009, Gavin Simpson wrot

[Rd] Missing links on Windows and \link[bar]{foo}; clarification

/ package? Is this different when referring to a function in another, non-recommended package (i.e. that \code{\link{panel.xyplot}} is preferred in most situations)? Thanks in advance, Gavin -- %~%~%~%~%~%~%~%~%~%~%~%~%~%~%~%~%~%~%~%~%~%~%~%~%~%~%~%~%~%~%~%~%~%~% Dr. Gavin Simpson

[Rd] Patch for minor typo in legend.Rd

d. All the best, G -- %~%~%~%~%~%~%~%~%~%~%~%~%~%~%~%~%~%~%~%~%~%~%~%~%~%~%~%~%~%~%~%~%~%~% Dr. Gavin Simpson [t] +44 (0)20 7679 0522 ECRC, UCL Geography, [f] +44 (0)20 7679 0565 Pearson Building, [e] gavin.simpsonATNOSPAMucl.ac.uk Gower Street, London [w] http://www.ucl.ac.uk

[Rd] bug in (and patch for) example preserving device 'ask' state [Was Re: example() and "ask"]

code. If anyone knows of such an example, I'd be happy to run it in my local R devel build and see how the new code performs. All the best, G On Wed, 2008-06-18 at 13:28 +0100, Gavin Simpson wrote: > Dear list, > > Is it intentional that example() opens a new device and leaves i

[Rd] example() and "ask"

svn rev45948 language R version.string R version 2.8.0 Under development (unstable) (2008-06-18 r45948) Many tha

Re: [Rd] Linux installation

T > > > > __ > > R-devel@r-project.org mailing list > > https://stat.ethz.ch/mailman/listinfo/r-devel > > > > > ****** > The contents of this email are f

Re: [Rd] 2.7.0 beta (rev 45263) failing 'make vignettes'

On Sat, 2008-04-12 at 17:48 +0100, Prof Brian Ripley wrote: > On Sat, 12 Apr 2008, Gavin Simpson wrote: > > > Dear list, > > > > On Fedora 8 I downloaded the beta version of R via svn. make and make > > check-all worked fine, but make vignettes is failing with: >

[Rd] 2.7.0 beta (rev 45263) failing 'make vignettes'

-- %~%~%~%~%~%~%~%~%~%~%~%~%~%~%~%~%~%~%~%~%~%~%~%~%~%~%~%~%~%~%~%~%~%~% Dr. Gavin Simpson [t] +44 (0)20 7679 0522 ECRC, UCL Geography, [f] +44 (0)20 7679 0565 Pearson Building, [e] gavin.simpsonATNOSPAMucl.ac.uk Gower Street, London [w] http://www.ucl.ac.

Re: [Rd] r44608 fails make check-all in scatter.smooth example

interchanged. Fixed in 44609, I hope. Dear Prof. Ripley, Yep, works for me. Cheers, Gavin > > > On Mon, 25 Feb 2008, Gavin Simpson wrote: > > > Dear List, > > > > Having had my appetite sufficiently whetted by Prof. Ripley's email > > about the new gr

[Rd] r44608 fails make check-all in scatter.smooth example

s.smooth -> simpleLoess -> .Fortran Execution halted This is on Fedora 8. Plots on the new X11() device look very nice though! Cheers, G -- %~%~%~%~%~%~%~%~%~%~%~%~%~%~%~%~%~%~%~%~%~%~%~%~%~%~%~%~%~%~%~%~%~%~% Dr. Gavin Simpson [t] +44 (0)20 7679 0522 ECRC, UCL Geography, [

Re: [Rd] 0.45<0.45 = TRUE (PR#10744)

l work for one the the R Core Development Team who will now have to deal with your bug report in the R bug tracker. HTH G > > Cheers! > > Jacques. > > -- %~%~%~%~%~%~%~%~%~%~%~%~%~%~%~%~%~%~%~%~%~%~%~%~%~%~%~%~%~%~%~%~%~%~% Dr. Gavin Simpson [t] +44 (0)20 7679

Re: [Rd] bug using matplot (PR#10676)

_ > R-devel@r-project.org mailing list > https://stat.ethz.ch/mailman/listinfo/r-devel -- %~%~%~%~%~%~%~%~%~%~%~%~%~%~%~%~%~%~%~%~%~%~%~%~%~%~%~%~%~%~%~%~%~%~% Dr. Gavin Simpson [t] +44 (0)20 7679 0522 ECRC, UCL Geography, [f] +44 (0)20 7679 05

Re: [Rd] pheno package (PR#10674)

heir time for free you can understand they might be a bit miffed that you appear to have failed to heed any of the advice and requests in the posting guide and instructions on what is and is not a bug in R from the FAQ. -- %~%~%~%~%~%~%~%~%~%~%~%~%~%~%~%~%~%~%~%~%~%~%~%~%~%~%~%~%~%~%~%~%~%~% Dr. Ga

Re: [Rd] help files for load and related functions

functions to have). I can understand > > there could be another point of view on that. However, I > > definitely think that there should be a Side Effects section > > in the help files of functions whose whole point is a side > > effect. > > > > Patrick Burns >

Re: [Rd] Problem with points/lines (PR#10472)

On Thu, 2007-11-29 at 17:34 +0100, Peter Dalgaard wrote: > Gavin Simpson wrote: > > On Thu, 2007-11-29 at 16:36 +0100, Peter Dalgaard wrote: > > > >> [EMAIL PROTECTED] wrote: > >> > >>> Full_Name: Carlos Gershenson > >>> Ver

Re: [Rd] Problem with points/lines (PR#10472)

s, xaxt = xaxt) } else stop("only for 1-D table") } ## example to run with: set.seed(1234) x <- sample(1:10, 30, replace = TRUE) y <- x / 2 plot(table(x), type = "p") points(table(y), col = "red", type = "p", pch = 2) ## And if you

[Rd] correct Rd markup for \value{}

R version.string R version 2.5.1 Patched (2007-07-05 r42131) -- %~%~%~%~%~%~%~%~%~%~%~%~%~%~%~%~%~%~%~%~%~%~%~%~%~%~%~%~%~%~%~%~%~%~% Gavin Simpson [t] +44 (0)20 7679 0522 ECRC, UCL Geography, [f] +44 (0)20 7679 0565 Pearson Building, [e] gavin.simpsonATNOSPAMucl.ac.uk Gower

Re: [Rd] Error while fitting Partial Proportional Odds model using vglm

a you are providing are what VGAM expects, and if the problem still persists, email Thomas with a reproducible example. G -- %~%~%~%~%~%~%~%~%~%~%~%~%~%~%~%~%~%~%~%~%~%~%~%~%~%~%~%~%~%~%~%~%~%~%~% Gavin Simpson [t] +44 (0)20 7679 0522 ECRC [f]

Re: [Rd] formula(CO2)

c | Plant as this can then be directly used in lme > lme(CO2) Linear mixed-effects model fit by REML Data: CO2 Log-restricted-likelihood: -283.1447 Fixed: uptake ~ conc (Intercept)conc 19.50028981 0.01773059 But like Gabor, I'm struggling to see where this [formula(data.frame)]

Re: [Rd] step() in sink() and Sweave()

On Wed, 2007-06-13 at 08:04 -0700, Seth Falcon wrote: > Jari Oksanen <[EMAIL PROTECTED]> writes: > > > On Wed, 2007-06-13 at 13:33 +0100, Gavin Simpson wrote: > >> Dear Developers, > >> > >> This change also just bit me whilst updating Sw

Re: [Rd] step() in sink() and Sweave()

onal but searching NEWS did not > give any information or reasoning. Would it be sensible to go back to > the old behaviour? I found some Swoven files from R 2.4.0 that still put > both parts of the output to the same place. For the sake of Sweave and > sink, I'd prefer the one pl

  1   2   >