Hi Núria, Good to hear this is now working, although I am not sure what you mean by "same version, but built on August instead of October" , where/how are you building ie from git or source forge and if from git which branch ? As a 3207 build is the id of the git stable/7 branch or sourceforge tarball which would be the same static archive as it has not changes since about Feb this year, only the git develop/7 branch has had updates since then ...
Best Regards Hugh Williams Professional Services OpenLink Software, Inc. // http://www.openlinksw.com/ Weblog -- http://www.openlinksw.com/blogs/ LinkedIn -- http://www.linkedin.com/company/openlink-software/ Twitter -- http://twitter.com/OpenLink Google+ -- http://plus.google.com/100570109519069333827/ Facebook -- http://www.facebook.com/OpenLinkSoftware Universal Data Access, Integration, and Management Technology Providers On 21 Oct 2014, at 09:32, Nuria Queralt Rosinach <nquer...@imim.es> wrote: > Hi Hugh and Rumi, > > Finally i solve it! i tried the same in a testing virtuoso server (same > version, but built on August instead of October) and two messages informing > that the problem was a question of grant two privileges on functions to the > "SPARQL" user come up. I set up this in our working virtuoso server and > solved the issue. Great!. What i don't understand is why these messages > didn't appear in the most recent build, and it only appeared the ugly and > non-informative at all "encoding problem .."? > > > Thanks for your time! > > Cheers, > Núria > > On 10/20/2014 01:02 PM, Hugh Williams wrote: >> Núria, >> >> On 20 Oct 2014, at 10:03, Nuria Queralt Rosinach <nquer...@imim.es> wrote: >> >>> Hi Rumi, >>> >>> anwer inline. >>> >>> On 10/17/2014 10:58 AM, Rumi wrote: >>>> Hi Nuria, >>>> >>>> On 17-Oct-14 8:45 AM, QUERALT ROSINACH, NURIA wrote: >>>>> Hi all, >>>>> >>>>> I have a problem with the following FED. I don't understand why this >>>>> simple query from the bio2rdf::irefindex sparql endpoint works: >>>>> >>>>> PREFIX bio2rdf-ifx: <http://bio2rdf.org/irefindex_vocabulary:> >>>>> SELECT ?ppi ?protein_dgn ?protein_irx WHERE { >>>>> ?ppi a bio2rdf-ifx:Pairwise-Interaction ; >>>>> bio2rdf-ifx:interactor_a ?protein_dgn ; >>>>> bio2rdf-ifx:interactor_b ?protein_irx . >>>>> } limit 20 >>>>> >>>>> >>>>> HTTP SPARQL QUERY: >>>>> MailScanner has detected a possible fraud attempt from >>>>> "irefindex.bio2rdf.org" claiming to be >>>>> http://irefindex.bio2rdf.org/sparql?default-graph-uri=&query=PREFIX+bio2rdf-ifx%3A+%3Chttp%3A%2F%2Fbio2rdf.org%2Firefindex_vocabulary%3A%3E%0D%0ASELECT++%3Fppi+%3Fprotein_dgn+%3Fprotein_irx+WHERE+%7B%0D%0A%3Fppi+a+bio2rdf-ifx%3APairwise-Interaction+%3B%0D%0A+++++++bio2rdf-ifx%3Ainteractor_a+%3Fprotein_dgn+%3B%0D%0A+++++++bio2rdf-ifx%3Ainteractor_b+%3Fprotein_irx+.%0D%0A%7D+limit+20&format=text%2Fhtml&timeout=0&debug=on >>>>> >>>>> >>>>> >>>>> And doing the same query from our isql shell works as well, but from our >>>>> sparql endpoint (http://rdf.disgenet.org/sparql/) does not: >>>>> >>>>> PREFIX bio2rdf-ifx: <http://bio2rdf.org/irefindex_vocabulary:> >>>>> SELECT ?ppi ?protein_dgn ?protein_irx WHERE { >>>>> SERVICE <http://irefindex.bio2rdf.org/sparql> { >>>>> ?ppi a bio2rdf-ifx:Pairwise-Interaction ; >>>>> bio2rdf-ifx:interactor_a ?protein_dgn ; >>>>> bio2rdf-ifx:interactor_b ?protein_irx . >>>>> } >>>>> } LIMIT 20 >>>> >>>> I've got data executing your SPARQL-FED query using our URIBurner instance >>>> [1]. >>>> >>>> -- See live results: http://linkeddata.uriburner.com/c/9DN77N2S >>> >>> As in our isql shell that we got results from there, but not from our >>> sparql endpoint. >>>> >>>> What Virtuoso product are you using -- Open Source / Commercial and also >>>> what is its build version? >>> >>> Our virtuoso distribution is from the open edition: >>> >>> Version: 07.10.3207 >>> Build: Oct 7 2014 >> >> [Hugh] A 3207 build is the stable/7 build from February, can you try >> updating your binary to the latest develop/7 build which will be more in >> line with what runs on our servers, and see if this resolves the problem: >> >> http://virtuoso.openlinksw.com/dataspace/doc/dav/wiki/Main/VOSGitUsage >> >> Regards >> Hugh >>> Thanks! >>> nuria >>> >>>> >>>> >>>> Links: >>>> >>>> 1. http://linkeddata.uriburner.com/sparql -- URIBurner instance. >>>> >>>> >>>> Best Regards, >>>> Rumi Kocis >>>> >>>> >>>>> >>>>> >>>>> HTTP SPARQL QUERY: >>>>> MailScanner has detected a possible fraud attempt from "rdf.disgenet.org" >>>>> claiming to be >>>>> http://rdf.disgenet.org/sparql/?default-graph-uri=&query=PREFIX+bio2rdf-ifx%3A+%3Chttp%3A%2F%2Fbio2rdf.org%2Firefindex_vocabulary%3A%3E%0D%0ASELECT++%3Fppi+%3Fprotein_dgn+%3Fprotein_irx+WHERE+%7B%0D%0ASERVICE+%3Chttp%3A%2F%2Firefindex.bio2rdf.org%2Fsparql%3E+%7B%0D%0A%3Fppi+a+bio2rdf-ifx%3APairwise-Interaction+%3B%0D%0A+++++++bio2rdf-ifx%3Ainteractor_a+%3Fprotein_dgn+%3B%0D%0A+++++++bio2rdf-ifx%3Ainteractor_b+%3Fprotein_irx+.%0D%0A%7D%0D%0A%7D+LIMIT+20&format=text%2Fhtml&timeout=0&debug=on >>>>> >>>>> >>>>> >>>>> I am sure it is related to some configuration setting that we missed. >>>>> Could you shed light on it? >>>>> >>>>> Many thanks in advance! >>>>> Cheers, >>>>> Núria >>>>> ------------------------------------------------------------------------------ >>>>> >>>>> Comprehensive Server Monitoring with Site24x7. >>>>> Monitor 10 servers for $9/Month. >>>>> Get alerted through email, SMS, voice calls or mobile push notifications. >>>>> Take corrective actions from your mobile device. >>>>> http://p.sf.net/sfu/Zoho >>>>> _______________________________________________ >>>>> Virtuoso-users mailing list >>>>> Virtuoso-users@lists.sourceforge.net >>>>> https://lists.sourceforge.net/lists/listinfo/virtuoso-users >>>> >>>> >>> >>> -- >>> ******************************************************************** >>> Núria Queralt Rosinach >>> Research Programme on Biomedical Informatics (GRIB) >>> Department of Experimental and Health Sciences >>> Universitat Pompeu Fabra >>> IMIM (Hospital del Mar Medical Research Institute) >>> C/Dr. Aiguader 88, 08003 >>> Barcelona, Spain >>> Tel.: +34 93 316 0536 (1536) >>> E-mail: nquer...@imim.es >>> Skype IM: nuriaqr76 >>> http://ibi.imim.es/ >>> ******************************************************************** >>> ------------------------------------------------------------------------------ >>> Comprehensive Server Monitoring with Site24x7. >>> Monitor 10 servers for $9/Month. >>> Get alerted through email, SMS, voice calls or mobile push notifications. >>> Take corrective actions from your mobile device. >>> http://p.sf.net/sfu/Zoho_______________________________________________ >>> Virtuoso-users mailing list >>> Virtuoso-users@lists.sourceforge.net >>> https://lists.sourceforge.net/lists/listinfo/virtuoso-users >> > > -- > ******************************************************************** > Núria Queralt Rosinach > Research Programme on Biomedical Informatics (GRIB) > Department of Experimental and Health Sciences > Universitat Pompeu Fabra > IMIM (Hospital del Mar Medical Research Institute) > C/Dr. Aiguader 88, 08003 > Barcelona, Spain > Tel.: +34 93 316 0536 (1536) > E-mail: nquer...@imim.es > Skype IM: nuriaqr76 > http://ibi.imim.es/ > ********************************************************************
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