Hi Hugh and Rumi,
Finally i solve it! i tried the same in a testing virtuoso server (same
version, but built on August instead of October) and two messages
informing that the problem was a question of grant two privileges on
functions to the "SPARQL" user come up. I set up this in our working
virtuoso server and solved the issue. Great!. What i don't understand is
why these messages didn't appear in the most recent build, and it only
appeared the ugly and non-informative at all "encoding problem .."?
Thanks for your time!
Cheers,
Núria
On 10/20/2014 01:02 PM, Hugh Williams wrote:
Núria,
On 20 Oct 2014, at 10:03, Nuria Queralt Rosinach <nquer...@imim.es
<mailto:nquer...@imim.es>> wrote:
Hi Rumi,
anwer inline.
On 10/17/2014 10:58 AM, Rumi wrote:
Hi Nuria,
On 17-Oct-14 8:45 AM, QUERALT ROSINACH, NURIA wrote:
Hi all,
I have a problem with the following FED. I don't understand why
this simple query from the bio2rdf::irefindex sparql endpoint works:
PREFIX bio2rdf-ifx: <http://bio2rdf.org/irefindex_vocabulary:>
SELECT ?ppi ?protein_dgn ?protein_irx WHERE {
?ppi a bio2rdf-ifx:Pairwise-Interaction ;
bio2rdf-ifx:interactor_a ?protein_dgn ;
bio2rdf-ifx:interactor_b ?protein_irx .
} limit 20
HTTP SPARQL QUERY:
*MailScanner has detected a possible fraud attempt from
"irefindex.bio2rdf.org" claiming to be*
http://irefindex.bio2rdf.org/sparql?default-graph-uri=&query=PREFIX+bio2rdf-ifx%3A+%3Chttp%3A%2F%2Fbio2rdf.org%2Firefindex_vocabulary%3A%3E%0D%0ASELECT++%3Fppi+%3Fprotein_dgn+%3Fprotein_irx+WHERE+%7B%0D%0A%3Fppi+a+bio2rdf-ifx%3APairwise-Interaction+%3B%0D%0A+++++++bio2rdf-ifx%3Ainteractor_a+%3Fprotein_dgn+%3B%0D%0A+++++++bio2rdf-ifx%3Ainteractor_b+%3Fprotein_irx+.%0D%0A%7D+limit+20&format=text%2Fhtml&timeout=0&debug=on
And doing the same query from our isql shell works as well, but
from our sparql endpoint (http://rdf.disgenet.org/sparql/) does not:
PREFIX bio2rdf-ifx: <http://bio2rdf.org/irefindex_vocabulary:>
SELECT ?ppi ?protein_dgn ?protein_irx WHERE {
SERVICE <http://irefindex.bio2rdf.org/sparql> {
?ppi a bio2rdf-ifx:Pairwise-Interaction ;
bio2rdf-ifx:interactor_a ?protein_dgn ;
bio2rdf-ifx:interactor_b ?protein_irx .
}
} LIMIT 20
I've got data executing your SPARQL-FED query using our URIBurner
instance [1].
-- See live results: http://linkeddata.uriburner.com/c/9DN77N2S
As in our isql shell that we got results from there, but not from our
sparql endpoint.
What Virtuoso product are you using -- Open Source / Commercial and
also what is its build version?
Our virtuoso distribution is from the open edition:
* Version: 07.10.3207
* Build: Oct 7 2014
[Hugh] A 3207 build is the stable/7 build from February, can you try
updating your binary to the latest develop/7 build which will be more
in line with what runs on our servers, and see if this resolves the
problem:
http://virtuoso.openlinksw.com/dataspace/doc/dav/wiki/Main/VOSGitUsage
Regards
Hugh
Thanks!
nuria
Links:
1. http://linkeddata.uriburner.com/sparql -- URIBurner instance.
Best Regards,
Rumi Kocis
HTTP SPARQL QUERY:
*MailScanner has detected a possible fraud attempt from
"rdf.disgenet.org" claiming to be*
http://rdf.disgenet.org/sparql/?default-graph-uri=&query=PREFIX+bio2rdf-ifx%3A+%3Chttp%3A%2F%2Fbio2rdf.org%2Firefindex_vocabulary%3A%3E%0D%0ASELECT++%3Fppi+%3Fprotein_dgn+%3Fprotein_irx+WHERE+%7B%0D%0ASERVICE+%3Chttp%3A%2F%2Firefindex.bio2rdf.org%2Fsparql%3E+%7B%0D%0A%3Fppi+a+bio2rdf-ifx%3APairwise-Interaction+%3B%0D%0A+++++++bio2rdf-ifx%3Ainteractor_a+%3Fprotein_dgn+%3B%0D%0A+++++++bio2rdf-ifx%3Ainteractor_b+%3Fprotein_irx+.%0D%0A%7D%0D%0A%7D+LIMIT+20&format=text%2Fhtml&timeout=0&debug=on
I am sure it is related to some configuration setting that we
missed. Could you shed light on it?
Many thanks in advance!
Cheers,
Núria
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--
********************************************************************
Núria Queralt Rosinach
Research Programme on Biomedical Informatics (GRIB)
Department of Experimental and Health Sciences
Universitat Pompeu Fabra
IMIM (Hospital del Mar Medical Research Institute)
C/Dr. Aiguader 88, 08003
Barcelona, Spain
Tel.: +34 93 316 0536 (1536)
E-mail:nquer...@imim.es
Skype IM: nuriaqr76
http://ibi.imim.es/
********************************************************************
------------------------------------------------------------------------------
Comprehensive Server Monitoring with Site24x7.
Monitor 10 servers for $9/Month.
Get alerted through email, SMS, voice calls or mobile push notifications.
Take corrective actions from your mobile device.
http://p.sf.net/sfu/Zoho_______________________________________________
Virtuoso-users mailing list
Virtuoso-users@lists.sourceforge.net
https://lists.sourceforge.net/lists/listinfo/virtuoso-users
--
********************************************************************
Núria Queralt Rosinach
Research Programme on Biomedical Informatics (GRIB)
Department of Experimental and Health Sciences
Universitat Pompeu Fabra
IMIM (Hospital del Mar Medical Research Institute)
C/Dr. Aiguader 88, 08003
Barcelona, Spain
Tel.: +34 93 316 0536 (1536)
E-mail: nquer...@imim.es
Skype IM: nuriaqr76
http://ibi.imim.es/
********************************************************************
------------------------------------------------------------------------------
Comprehensive Server Monitoring with Site24x7.
Monitor 10 servers for $9/Month.
Get alerted through email, SMS, voice calls or mobile push notifications.
Take corrective actions from your mobile device.
http://p.sf.net/sfu/Zoho
_______________________________________________
Virtuoso-users mailing list
Virtuoso-users@lists.sourceforge.net
https://lists.sourceforge.net/lists/listinfo/virtuoso-users
