Núria, On 20 Oct 2014, at 10:03, Nuria Queralt Rosinach <nquer...@imim.es> wrote:
> Hi Rumi, > > anwer inline. > > On 10/17/2014 10:58 AM, Rumi wrote: >> Hi Nuria, >> >> On 17-Oct-14 8:45 AM, QUERALT ROSINACH, NURIA wrote: >>> Hi all, >>> >>> I have a problem with the following FED. I don't understand why this simple >>> query from the bio2rdf::irefindex sparql endpoint works: >>> >>> PREFIX bio2rdf-ifx: <http://bio2rdf.org/irefindex_vocabulary:> >>> SELECT ?ppi ?protein_dgn ?protein_irx WHERE { >>> ?ppi a bio2rdf-ifx:Pairwise-Interaction ; >>> bio2rdf-ifx:interactor_a ?protein_dgn ; >>> bio2rdf-ifx:interactor_b ?protein_irx . >>> } limit 20 >>> >>> >>> HTTP SPARQL QUERY: >>> http://irefindex.bio2rdf.org/sparql?default-graph-uri=&query=PREFIX+bio2rdf-ifx%3A+%3Chttp%3A%2F%2Fbio2rdf.org%2Firefindex_vocabulary%3A%3E%0D%0ASELECT++%3Fppi+%3Fprotein_dgn+%3Fprotein_irx+WHERE+%7B%0D%0A%3Fppi+a+bio2rdf-ifx%3APairwise-Interaction+%3B%0D%0A+++++++bio2rdf-ifx%3Ainteractor_a+%3Fprotein_dgn+%3B%0D%0A+++++++bio2rdf-ifx%3Ainteractor_b+%3Fprotein_irx+.%0D%0A%7D+limit+20&format=text%2Fhtml&timeout=0&debug=on >>> >>> >>> >>> And doing the same query from our isql shell works as well, but from our >>> sparql endpoint (http://rdf.disgenet.org/sparql/) does not: >>> >>> PREFIX bio2rdf-ifx: <http://bio2rdf.org/irefindex_vocabulary:> >>> SELECT ?ppi ?protein_dgn ?protein_irx WHERE { >>> SERVICE <http://irefindex.bio2rdf.org/sparql> { >>> ?ppi a bio2rdf-ifx:Pairwise-Interaction ; >>> bio2rdf-ifx:interactor_a ?protein_dgn ; >>> bio2rdf-ifx:interactor_b ?protein_irx . >>> } >>> } LIMIT 20 >> >> I've got data executing your SPARQL-FED query using our URIBurner instance >> [1]. >> >> -- See live results: http://linkeddata.uriburner.com/c/9DN77N2S > > As in our isql shell that we got results from there, but not from our sparql > endpoint. >> >> What Virtuoso product are you using -- Open Source / Commercial and also >> what is its build version? > > Our virtuoso distribution is from the open edition: > > Version: 07.10.3207 > Build: Oct 7 2014 [Hugh] A 3207 build is the stable/7 build from February, can you try updating your binary to the latest develop/7 build which will be more in line with what runs on our servers, and see if this resolves the problem: http://virtuoso.openlinksw.com/dataspace/doc/dav/wiki/Main/VOSGitUsage Regards Hugh > > Thanks! > nuria > >> >> >> Links: >> >> 1. http://linkeddata.uriburner.com/sparql -- URIBurner instance. >> >> >> Best Regards, >> Rumi Kocis >> >> >>> >>> >>> HTTP SPARQL QUERY: >>> http://rdf.disgenet.org/sparql/?default-graph-uri=&query=PREFIX+bio2rdf-ifx%3A+%3Chttp%3A%2F%2Fbio2rdf.org%2Firefindex_vocabulary%3A%3E%0D%0ASELECT++%3Fppi+%3Fprotein_dgn+%3Fprotein_irx+WHERE+%7B%0D%0ASERVICE+%3Chttp%3A%2F%2Firefindex.bio2rdf.org%2Fsparql%3E+%7B%0D%0A%3Fppi+a+bio2rdf-ifx%3APairwise-Interaction+%3B%0D%0A+++++++bio2rdf-ifx%3Ainteractor_a+%3Fprotein_dgn+%3B%0D%0A+++++++bio2rdf-ifx%3Ainteractor_b+%3Fprotein_irx+.%0D%0A%7D%0D%0A >>> %7D+LIMIT+20&format=text%2Fhtml&timeout=0&debug=on >>> >>> >>> I am sure it is related to some configuration setting that we missed. Could >>> you shed light on it? >>> >>> Many thanks in advance! >>> Cheers, >>> Núria >>> ------------------------------------------------------------------------------ >>> >>> Comprehensive Server Monitoring with Site24x7. >>> Monitor 10 servers for $9/Month. >>> Get alerted through email, SMS, voice calls or mobile push notifications. >>> Take corrective actions from your mobile device. >>> http://p.sf.net/sfu/Zoho >>> _______________________________________________ >>> Virtuoso-users mailing list >>> Virtuoso-users@lists.sourceforge.net >>> https://lists.sourceforge.net/lists/listinfo/virtuoso-users >> >> > > -- > ******************************************************************** > Núria Queralt Rosinach > Research Programme on Biomedical Informatics (GRIB) > Department of Experimental and Health Sciences > Universitat Pompeu Fabra > IMIM (Hospital del Mar Medical Research Institute) > C/Dr. Aiguader 88, 08003 > Barcelona, Spain > Tel.: +34 93 316 0536 (1536) > E-mail: nquer...@imim.es > Skype IM: nuriaqr76 > http://ibi.imim.es/ > ******************************************************************** > ------------------------------------------------------------------------------ > Comprehensive Server Monitoring with Site24x7. > Monitor 10 servers for $9/Month. > Get alerted through email, SMS, voice calls or mobile push notifications. > Take corrective actions from your mobile device. > http://p.sf.net/sfu/Zoho_______________________________________________ > Virtuoso-users mailing list > Virtuoso-users@lists.sourceforge.net > https://lists.sourceforge.net/lists/listinfo/virtuoso-users
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