Re: [R] Parsing all rows & columns of a Dataframe into one column

2015-08-11 Thread Anshuk Pal Chaudhuri
Thanks. Another way of handling is which I understood from other forum, thought to share here as well. data.frame(Value=dat[!is.na(dat)]) Regards, Anshuk Pal Chaudhuri -Original Message- From: PIKAL Petr [mailto:petr.pi...@precheza.cz] Sent: 10 August 2015 12:21 To: Anshuk Pal Chaudhur

[R] Rprof and system

2015-08-11 Thread Benjamin Tyner
Hi I have an R script which invokes WriteXLS() (from the package of the same name) which as you may know, calls perl via system(). I've noticed that when I enable profiling using Rprof(), when the script gets to the part where perl is called, it gets "stuck": it just sits there using 99-100% CPU a

Re: [R] LMER - generate data and define model (2 fixed effects and 1 random effect or 1 fixed effect and 2 random effects)

2015-08-11 Thread Bert Gunter
You need to: 1) Re-read ?seq. Your syntax is wrong. ("," not ":" ) 2) Note that (n-1) x m != n x m Cheers, Bert Bert Gunter "Data is not information. Information is not knowledge. And knowledge is certainly not wisdom." -- Clifford Stoll On Tue, Aug 11, 2015 at 2:21 AM, Rosa Oliveira wro

Re: [R] install.package - CaTools

2015-08-11 Thread Jeff Newmiller
Have you tried the usual install.packages method from CRAN? I just installed it into 3.2.1 and 3.1.3 on Win7x64 just fine. Note that this list does not officially support old versions of R, so if this is really specific to 3.1.1 then you should just upgrade. -

Re: [R] LMER - generate data and define model (2 fixed effects and 1 random effect or 1 fixed effect and 2 random effects)

2015-08-11 Thread Rosa Oliveira
Dear Thierry, even using the code: id.pat = rep(seq(1:nsample), each =n.longitudinal.observations) time = rep(seq(1:n.longitudinal.observations)-1, nsample) age = rnorm(nsample, mean = 36, sd = .8) f.age

Re: [R] LMER - generate data and define model (2 fixed effects and 1 random effect or 1 fixed effect and 2 random effects)

2015-08-11 Thread Rosa Oliveira
Dear Thierry id.pat = rep(seq(1:nsample), each =n.longitudinal.observations) time = rep(seq(1:n.longitudinal.observations)-1, nsample) age = rnorm(nsample, mean = 36, sd = .8) f.age= table(cut(age, b

[R] install.package - CaTools

2015-08-11 Thread Parker, Paul
How or where can I find the appropriate version of CaTools to install into R version 3.1.3 on Windows 7 platform ? I have tried to install manually, but with no success. Paul Parker IT Technical Analyst AMS MS&O MMD Site Operations West Point WP62-7 a Notice: This e-mail message, together wit

[R] plspm error: Error in solve.qr(qr(X[, blockinds == j]), Z[, j]) :

2015-08-11 Thread mscheb
Hello there, I am performing a path analysis using plspm. I successfully ran one analysis but then tried to rerun with some tweaks of my data and now am getting this error message: Error in solve.qr(qr(X[, blockinds == j]), Z[, j]) : singular matrix 'a' in 'solve' My code is: > PNS = c(0, 0, 0

[R] Getting previous day data and implementing it for quantstrat

2015-08-11 Thread boredstoog via R-help
I am a newbie and trying to create my own bactesting code after going through demo(). I am using a *candle engulfing pattern* strategy and this is the formula buy=(close(1) < close) and (high(1) < high) and (low(1) < low) sell=(close(1) > close) and (high(1) > high) and (low(1) > low) **(1) repres

Re: [R] Plotting wind direction as arrows with precipitation

2015-08-11 Thread John Kane
Thanks Bert, I think that arrow() would do what the OP needs. The main problem would be calculating the angles properly if I understand the issue. Still there cannot be "that" many points on a compass, can there? John Kane Kingston ON Canada > -Original Message- > From: bgunter.4...@g

Re: [R] Plotting wind direction as arrows with precipitation

2015-08-11 Thread John Kane
Thanks Bert, I think that arrow() would do what the OP needs. The main problem would be calculating the angles properly if I understand the issue. Still there cannot be "that" many points on a compass, can there? John Kane Kingston ON Canada > -Original Message- > From: bgunter.4...@g

Re: [R] Problem with path.expand("~")

2015-08-11 Thread William Dunlap
In the R GUI the output is > path.expand("~") [1] "~" Did you set the environment variable R_USER to something odd like "~"? Bill Dunlap TIBCO Software wdunlap tibco.com On Tue, Aug 11, 2015 at 7:41 AM, Thierry Onkelinx wrote: > Dear all, > > I'm puzzled by the behaviour of path.ex

Re: [R] cut variable within a loop

2015-08-11 Thread Michael Dewey
Dear Janka If you supply a single number to the breaks parameter of cut I think it is the number of intervals. On 11/08/2015 13:57, Janka Vanschoenwinkel wrote: Hi Thierry! Thanks for your answer. I tried this, but I get this error: "Error in cut.default(x, k2) : invalid number of intervals"

Re: [R] Problem with path.expand("~")

2015-08-11 Thread Duncan Murdoch
On 11/08/2015 10:51 AM, Sarah Goslee wrote: > Hm. > > On my linux system: > >> path.expand("~") > [1] "/home/sarahg" > > The help file says: > Expand a path name, for example by replacing a leading tilde by > the user's home directory (if defined on that platform). > > Does Windows 7

Re: [R] Problem with path.expand("~")

2015-08-11 Thread John McKown
Works correctly on 3.1.1 under Windows . You may have found a problem in the Windows port. The Linux version of R 3.2.1 works correctly, for me. R version 3.1.1 (2014-07-10) -- "Sock it to Me" Copyright (C) 2014 The R Foundation for Statistical Computing Platform: i386-w64-mingw32/i386 (32-bit) R

Re: [R] Plotting wind direction as arrows with precipitation

2015-08-11 Thread Bert Gunter
... don't know if this will help, but grid graphics, which is the graphics engine for both trellis and ggplot, has a basic arrow() function. Trellis's provides an interface to it with the panel.arrows() panel function. I suspect ggplot has something similar, but as I don't use it, I don't know for

Re: [R] Problem with path.expand("~")

2015-08-11 Thread Sarah Goslee
Hm. On my linux system: > path.expand("~") [1] "/home/sarahg" The help file says: Expand a path name, for example by replacing a leading tilde by the user's home directory (if defined on that platform). Does Windows 7 define ~? Just because RStudio defines it for you, doesn't mean th

[R] Problem with path.expand("~")

2015-08-11 Thread Thierry Onkelinx
Dear all, I'm puzzled by the behaviour of path.expand("~") In the RStudio IDE the output is > path.expand("~") [1] "C:/Users/thierry_onkelinx/Documents" In the R GUI the output is > path.expand("~") [1] "~" But I'm expecting the same result as in the RStudio IDE. The "Start in" parameter of sho

Re: [R] Plotting wind direction as arrows with precipitation

2015-08-11 Thread John Kane
Hi, Good example and data. Thanks. Here are a couple of approaches that may help. I tend to use a lot of what I tend to think of as the ggplot family of associated so you may need to install a couple packages. I used lubridate to transform your character dates to POSIXct. Jeff N's code does

Re: [R] Error in .External2(C_X11, paste("png::", filename, sep = ""), g$width, : unable to start device PNG

2015-08-11 Thread Yihui Xie
>From my experience, that is often an indication that you built R from source but didn't pay attention to the cairo/pango dependencies. You can either install R from a repository, or make sure you have all the dependencies installed before you build R from source (e.g. for Ubuntu, use apt-get build

Re: [R] cut variable within a loop

2015-08-11 Thread Janka Vanschoenwinkel
Hi Thierry! Thanks for your answer. I tried this, but I get this error: "Error in cut.default(x, k2) : invalid number of intervals" Which is strange because I am not specifying intervals, but the number at where the sample has to be cut? Greetings from Belgium! :-) 2015-08-11 14:52 GMT+02:00 T

[R] Error in .External2(C_X11, paste("png::", filename, sep = ""), g$width, : unable to start device PNG

2015-08-11 Thread Ramiro Barrantes
Hello, I have the following reproducible knitr document: \documentclass{article} \usepackage[sc]{mathpazo} \usepackage[T1]{fontenc} \usepackage{geometry} \begin{document} <>= library(lattice) xyplot(1:2~1:2) @ \end{document} but knitr is giving me an error: Quitting from lines 9-11 (test.Rn

Re: [R] cut variable within a loop

2015-08-11 Thread Thierry Onkelinx
You'll need to send a reproducible example of the code. We can't run the code that you send. Hence it is hard to help you. See e.g. http://adv-r.had.co.nz/Reproducibility.html ir. Thierry Onkelinx Instituut voor natuur- en bosonderzoek / Research Institute for Nature and Forest team Biometrie & Kw

Re: [R] cut variable within a loop

2015-08-11 Thread Thierry Onkelinx
Dear Janka, You loop goes for 0 to 100. It should probably go from 1:99 Best regards, ir. Thierry Onkelinx Instituut voor natuur- en bosonderzoek / Research Institute for Nature and Forest team Biometrie & Kwaliteitszorg / team Biometrics & Quality Assurance Kliniekstraat 25 1070 Anderlecht Belg

[R] cut variable within a loop

2015-08-11 Thread Janka Vanschoenwinkel
Dear list members, I have a loop where I want to do several calculations for different samples and save the results for each sample. These samples are for each loop different. I want to use the "i" in the loop to cut the samples. So for instance: - In loop 1 (i=1), I have a sample from 0-1 an

Re: [R] LMER - generate data and define model (2 fixed effects and 1 random effect or 1 fixed effect and 2 random effects)

2015-08-11 Thread Thierry Onkelinx
Dear Rosa, 1) use cut() to convert a continuous variable into a factor. See ?cut for the details. 2) The syntax for factors is the same as for continuous variables. Just add the name of the factor variable to the formula fAge <- cut(age) yy~1+fAge+time+(time|id.pat) 3) Add + (1|fAge) to the formul

Re: [R] replacing then summing by values from another dataframe

2015-08-11 Thread Gerrit Eichner
Hello, Xianming, I have changed your (particular) data structure: use matrices because you have only numeric scores and effects, use NA instead of -1 as missing value (as usual), don't use columns for ids or row/column names (except for the easy of reading the data structures), increase your s