t call these complex routines directly, R is
often used as a front-end for libraries that do, so Rlapack-related linking
errors are arising more and more.
Is the cost really so high as to preclude adding the remaining Lapack routines
to Rlapack?
Best,
Keith
> On Mar 26, 2018, at 10:24
A simpler fix: return rank=NA when Lapack is used.
Keith
> On Jan 23, 2018, at 5:36 AM, Serguei Sokol wrote:
>
> Le 23/01/2018 à 08:47, Martin Maechler a écrit :
>>>>>>> Serguei Sokol
>>>>>>> on Mon, 22 Jan 2018 17:57:47 +0100 writes:
&
in two places (around lines 657 and 1175).
Keith
> On Jan 22, 2018, at 11:57 AM, Serguei Sokol wrote:
>
> Le 22/01/2018 à 17:40, Keith O'Hara a écrit :
>> This behavior is noted in the qr documentation, no?
>>
>> rank - the rank of x as computed by the decomposi
This behavior is noted in the qr documentation, no?
rank - the rank of x as computed by the decomposition(*): always full rank in
the LAPACK case.
> On Jan 22, 2018, at 11:21 AM, Serguei Sokol wrote:
>
> Hi,
>
> I have noticed different rank values calculated by qr() depending on
> LAPACK p
chips yet; might be worth considering its near- and long-term
future (vs something else).
Keith
> On Jan 10, 2018, at 8:24 PM, Benjamin Tyner wrote:
>
> Thanks Keith. We checked, and indeed libopenblas is not linked against libomp
> nor libgomp. We suspect this is because we used cond
I won’t play nicely with a package that combines omp pragmas with calls to BLAS
routines, e.g. something you might get with source Armadillo/Eigen/Blaze code,
for reasons that Benjamin mentioned in his initial email (pthreads vs omp).
Keith
> On Jan 10, 2018, at 1:28 AM, Avraham Adler wr
Check if libopenblas is linked against libomp or libgomp.
I’d be curious to see any errors that arise when an OpenMP version of OpenBLAS
is linked with R.
Keith
> On Jan 9, 2018, at 11:01 PM, Benjamin Tyner wrote:
>
> I didn't do the compile; is there a way to check whether
Do those issues still arise when OpenBLAS is compiled with USE_OPENMP=1 ?
Keith
> On Jan 9, 2018, at 6:03 PM, Benjamin Tyner wrote:
>
> Please pardon my ignorance, but doesn't OpenBLAS still not always play nicely
> with multi-threaded OpenMP? (for example, don't rac
ure how pervasive a problem this is, though.
Keith
On Sat, Dec 16, 2017 at 4:01 PM, Dirk Eddelbuettel wrote:
>
> Kenny,
>
> On 17 December 2017 at 09:28, Kenny Bell wrote:
> | Hi R-devel list,
> |
> | OpenBLAS is readily available for unix-likes:
> |
> | https://cloud
no longer properly signalled
>> (PR#16604). Also, ‘Ctrl C’ in incremental search behaved
>> confusingly in R (unix) consoles (PR#16603) also for older
>> readline versions. These have been fixed (for readline >=
>> 6.3 only), thanks to patch
On my machine (iMac w/ El Capitan (10.11.4)), svn rev. 70662 builds without any
errors (and the warning I mentioned before is now gone too).
K
> On May 24, 2016, at 6:55 AM, Martin Maechler
> wrote:
>
>
> Can you (Frederick, Peter, Keith, but ideally others, too)
> conf
^
1 warning generated.
Best,
Keith
> On May 18, 2016, at 12:54 PM, Martin Maechler
> wrote:
>
>
>> Yes, the nightly build is broken in a similar, but different way. See below.
>> Both seem to be readline related, so Frederick Eaton's patches, which Martin
shared R library, R profiling, memory profiling
Capabilities skipped:
Options not enabled: shared BLAS
Recommended packages: yes
Apologies in advance if I have incorrectly formatted the issue or omitted
something important.
Kind regards,
Keith
___
On 15/05/2015 05:35, bw1984 wrote:
I'm trying to use a nested ifelse condition to compare two lines.
Input:
Code:
Expected Output:
Actual Output:
Any idea what might be causing this problem?
--
View this message in context:
http://r.789695.n4.nabble.com/Error-when-comparing-two-var
s for both R-3.1.1 and R-3.1.2+
(My understanding is that the Try function is there to put a GUI box around the
error messages.)
I shall update affylmGUI versions accordingly soon.
cheers
Keith
PS> I have also changed the Depends in DESCRIPTION to Imports and added an
import statement to the
broken.
My question is, do I need to do something with the affylmGUI code? I'd
appreciate some advice if so.
Is this failure related to bug 15957
(https://bugs.r-project.org/bugzilla3/
packages affylmGUI and limmaGUI, probably
with a sleep time of 0.1 to be on the safe side,
many thanks,
Keith Satterley
On 18/12/2012 9:38 PM, Moeltner, Andreas wrote:
R Version 2.15.0/Windows XP
Maybe this will help to identify the problem (I have similar problems with
other tcltk-windows, too
dows that were
frozen.
I haven't submitted it to R bug list yet. Should I now go ahead and do that?
cheers,
Keith Satterley
On 20/11/2012 8:20 AM, Duncan Murdoch wrote:
On 19/11/2012 12:05 AM, Keith wrote:
...
On MS Windows (I have tested on Win XP-32bit and Win7-64bit) the problem
occurs in
;
instruction.
I would appreciate if others can confirm similar behaviour.
Can anyone suggest why it worked under R-2.13.x but not in later
versions of R.
Was there a change in R that impacts with this aspect of tcltk?
Is there a work around for this problem?
Any suggestions apprec
No reply in a number of hours, so here is a suggestion from ignorance :-}
?Startup refers to a number of other "site and user files to process for
setting environment variables" but not to Rcmd_environ. The contents of
$R_HOME/etc/Rcmd_environ seem to reflect (some of) the contents of
(some) o
"Timothy Bates" wrote in message
news:1b5e1d00-397b-429b-b20c-0fba06084...@gmail.com...
I heard that a function called use() had been mooted as being more
intuitively named than library()
If so, it might be handy if this worked
use(c("MASS","car))
currently this fails
library(c("MASS","ca
s( asNamespace( 'sensory')), where=
> asNamespace( 'sensory'), prune='CreateMeanFizz')
> callers.of('CreateMeanFizz', ff)
---
where 'sensory' is the loaded package I want to search, and 'CreateMeanFizz'
is the non-exported functi
, function(x) tarFunc %in% findGlobals(get(x, tarPack),
FALSE)$functions)
flist[gotit]
}
# e.g.
called.by("CreateMeanFizz", "package:sensory")
--
Thanks again for the input.
Keith Jewell
>> Hi,
>>
>> I'd like to kno
yone point me in the right direction?
Thanks in advance,
Keith Jewell
__
R-devel@r-project.org mailing list
https://stat.ethz.ch/mailman/listinfo/r-devel
),".Rprofile_hiding",sep=.Platform$file.sep),paste(Sys.getenv("HOME"),".Rprofile",sep=.Platform$file.sep))
I think this should be platform independent, but have mainly tried it on
Windows and Unix.
cheers,
Keith Satterley,
On 18/02/2011 11:12 PM, Jon Clayden wrote:
ndows 32/64 bit binary build of the 2010-11-27
r53672 development snapshot of R (which will eventually become
R-2.13.0).". Do you think this is an error on my part or do you see the
same thing,
cheers,
Keith
====
Keith Satterley
Bioinformatics Division
The Walter and
Hello Urbanek,
Simon Urbanek wrote:
Keith,
On Nov 19, 2010, at 7:40 PM, Keith wrote:
Dear R users,
I have a small project written in Java and need some statical tools. Therefore,
I used JRI (in rJava package) as an interface between R and Java to write some
wrappers for my work. However
r one. But, it seems that it's still considered as 2 threads. Did
I miss something? or probably, I have to set-up JRI server for my
project? or other recommendations for my purpose?
R version: 2.11.1
rJava version: 0.8-4
OS: Arch Linux
Best,
Keith
__
e".
try a file.create(t) after tempfile()
cheers,
Keith
Dan Tenenbaum wrote:
According to ?system2, I should be able to direct the output of STDERR to a
file by giving the filename as a character vector to the "stderr" argument.
But here is what happens.
Given a ruby script test.r
or warranties of any kind, but perhaps people will find it
useful.
It now reasonably meets my needs so I'm not planning to do any more work on
it. I'm sure real R experts will be able to improve it..
Regards,
Keith J
"Keith Jewell" wrote in messag
ir() navigating to 'Server02\\stats\\R\\CBRIutils' adds the
package CBRIutils
then
reload("CBRIutils") re-sources all '\\R\\*.R' files.
and
help.CBRIutils(item) converts '\\man\\item.Rd' to '\\man\\item.html' which
it op
ce is gained with it elsewhere.
We will leave the multi CPU use of R to our larger unix servers.
cheers,
Keith
Prof Brian Ripley wrote:
The answer to (1) is in the rw-FAQ, so see
library(fortunes)
fortune('WTFM')
On Mon, 28 Sep 2009, Corrado wrote:
1) Would a package compiled for Wi
8GB of memory. Am I right in assuming that
when the 64 bit version of Windows 7 is available, it will allow R users
to make good use of the 8GB of memory. Does this happen under the
current higher end versions of 64 bit Vista?
cheers,
Keith
====
Keith Satterley
Bioinformatics
Info()
R version 2.9.0 Under development (unstable) (2009-03-13 r48127)
i386-pc-mingw32
locale:
LC_COLLATE=English_Australia.1252;LC_CTYPE=English_Australia.1252;LC_MONETARY=English_Australia.1252;LC_NUMERIC=C;LC_TIME=English_Australia.1252
attached base packages:
[1] stats graphics
YPE=English_Australia.1252;LC_MONETARY=English_Australia.1252;LC_NUMERIC=C;LC_TIME=English_Australia.1252
attached base packages:
[1] stats graphics grDevices datasets utils methods base
loaded via a namespace (and not attached):
[1] tools_2.9.0
Same situation in R2.8.1
cheers,
Keith
locale:
LC_CTYPE=en_GB.UTF-8;LC_NUMERIC=C;LC_TIME=en_GB.UTF-8;LC_COLLATE=en_GB.U
TF-8;LC_MONETARY=C;LC_MESSAGES=en_GB.UTF-8;LC_PAPER=en_GB.UTF-8;LC_NAME=
C;LC_ADDRESS=C;LC_TELEPHONE=C;LC_MEASUREMENT=en_GB.UTF-8;LC_IDENTIFICATI
ON=C
attached base packages:
[1] stats graphics grDevices utils datasets
I use Sys.info()["sysname"].
It returns "Darwin" on a Mac, "Windows" on MS Windows and "Linux" on my Linux
box. Is this sufficient for your needs,
I'm using R-2.6.0alpha on MS Windows and 2.5.0 on Mac and Linux at the moment.
cheers,
Keith Satterley
> -Original Message-
> From: Prof Brian Ripley [mailto:[EMAIL PROTECTED]
> Sent: 06 November 2006 11:42
> To: Keith Ponting
> Cc: r-devel@r-project.org
> Subject: Re: [Rd] CRAN task views work only once per session (PR#9330)
>
> I think the following item in N
gdom.1252;LC_CTYPE=English_United
Kingdom.1252;LC_MONETARY=English_United
Kingdom.1252;LC_NUMERIC=C;LC_TIME=English_United Kingdom.1252
attached base packages:
[1] "methods" "stats" "graphics" "grDevices" "utils"
"datasets"
[7] &q
torhttp://www.bioconductor.org FALSE TRUE
TRUE FALSE
Omegahat Omegahat http://www.omegahat.org/R FALSE TRUE
TRUE FALSE
>
Did I hear that there was a bug in read.table in R2.4.0?
Is this comment.char parameter the correct solution?
cheers,
Keith
=
Full_Name: Keith Frost
Version: 2.1.0
OS: Debian Sarge
Submission from: (NULL) (66.162.141.10)
This has actually been a problem for some time in R under Linux. (I noticed
it under previous builds for Redhat 9 as well.) The graphics device windows
produced by the x11() function do not always
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