.0658141036401502788e-14
[4] -3.5527136788005009294e-15
I hope this helps you to track it down.
Cheers,
Simon
On Mar 1, 2021, at 4:50 AM, Paul Gilbert wrote:
If there was a response to the "how can I test it out" part of this question
then I missed it. Can anyone point to a Win-b
m a time when simple double precision was the norm, the
tolerances are already fairly relaxed so I hesitate to adjust them with
actually examining the results.
Paul Gilbert
On 2021-02-22 3:30 a.m., Travers Ching wrote:
I noticed CRAN is now doing checks against Apple M1, and some packages are
, so don't
put in anything you are experimenting with.
Good luck,
Paul Gilbert
On 6/1/19 8:02 PM, Therneau, Terry M., Ph.D. via R-devel wrote:
On 6/1/19 1:32 PM, Marc Schwartz wrote:
On Jun 1, 2019, at 12:59 PM, Peter Langfelder
wrote:
On Sat, Jun 1, 2019 at 3:22 AM Therneau, Terry
ly and you have to specify it.) Then
if you accidentally put singles, like a constant 0.0 rather than a
constant 0.0D+0, into a double you will have small junk in the lower
precision part.
(I am assuming you are talking about a sum of reals, not integer or
complex.)
HTH,
Paul Gilbert
On 2/14/
specified RNG to "buggy Kinderman-Ramage".
Perhaps there does need to be a protocol for testing before release.
When my package setRNG fails then many of my other packages will also
fail because they depend on it. This is a simple fix but reverse
dependencies may make it look like lots of
om numbers you need to keep
track of both the starting seed and the number of nodes.)
Paul Gilbert
On 11/05/2017 10:58 AM, peter dalgaard wrote:
On 5 Nov 2017, at 15:17 , Duncan Murdoch wrote:
On 04/11/2017 10:20 PM, Daniel Nordlund wrote:
Tirthankar,
"random number generators" d
In R 3.3.2 detectCores() in package parallel reports 2 rather than 1 on
Raspberry Pi B+ running Raspbian. (This report is just 'for the record'.
The model is superseded and I think no longer produced.) The problem
seems to be caused by
grep processor /proc/cpuinfo
processor : 0
model n
it annoys me precisely when I need to be
annoyed, that is, when I haven't thought through the consequences of
sending zero-length arguments.
On Fri, Sep 9, 2016 at 6:00 AM, Paul Gilbert wrote:
On 09/08/2016 01:22 PM, Gabriel Becker wrote:
On Thu, Sep 8, 2016 at 10:05 AM, William Dunlap wrote:
On 09/08/2016 01:22 PM, Gabriel Becker wrote:
On Thu, Sep 8, 2016 at 10:05 AM, William Dunlap wrote:
Shouldn't binary operators (arithmetic and logical) should throw an error
when one operand is NULL (or other type that doesn't make sense)? This is
a different case than a zero-length operan
And, no I did not get burned by the R 1.7.0 change in the default
generator. I got burned by a much earlier, unadvertised, and more subtle
change in the Splus generator.)
Paul Gilbert
so it's not obvious that we
would do it.
Duncan Murdoch
On 30/08/2016 5:45 PM, Mark Roberts wrote:
Wh
ble combinations
of missing Suggested packages, but that's probably far too slow to be a
default.
But how do you decide pass/fail when you do this? I think it will only
pass when all the suggested packages are available?
Paul Gilbert
BTW, I'm not completely sure it needs to be possibl
On 10/22/2015 03:55 PM, Duncan Murdoch wrote:
I'm planning on adding some new WebGL functionality to the rgl package,
but it will pull in a very large number of dependencies. Since many
people won't need it, I'd like to make the new parts optional.
The general idea I'm thinking of is to put th
On 06/30/2015 11:33 AM, Duncan Murdoch wrote:
On 30/06/2015 5:27 PM, Lorenz, David wrote:
There is something I'm really missing here. The function show is a
standardGeneric function, so the correct way to write it as method like
this:
That describes methods::show. The problem is that the de
If your tests can be divided into multiple files in the tests/ directory
then you will get lines like
* checking tests ...
Running ‘test1.R’
Running ‘test2.R’
Running ‘test3.R’
...
Paul
On 05/04/2015 11:52 AM, Toby Hocking wrote:
I am the author of R package animint which uses testthat f
ion in the popular 'dplyr' package masks the one
that has been in the stats package forever, and they have nothing
in common, so that may give you an example.
As I recall, several packages mask the simulate generic in stats, if you
are looking for examples.
Paul Gilbert
Bill Dunlap
TI
On 02/08/2015 09:33 AM, Dirk Eddelbuettel wrote:
On 7 February 2015 at 19:52, otoomet wrote:
| random numbers. For instance, can I be sure that
| set.seed(0); print(runif(1)); print(rnorm(1))
| will always print the same numbers, also in the future version of R? There
Yes, pretty much.
Th
amespace("tseries"), it calls getNamespace("tseries"),
which has the side effect of loading that package (and its dependencies).
One way to work around this is to check loadedNamespaces() before you
try to unload a package.
-Winston
On Thu, Jan 8, 2015 at 9:45 AM, Paul Gilbert
In the documentation the closed thing I see to an explanation of this is
that ?detach says "Unloading some namespaces has undesirable side effects"
Can anyone explain why unloading tseries will load zoo? I don't think
this behavior is specific to tseries, it's just an example. I realize
one wo
On 14-11-26 05:49 PM, Duncan Murdoch wrote:
On 26/11/2014, 1:45 PM, Paul Gilbert wrote:
Is there a good strategy for testing examples which should not be run by
default? For instance, I have examples which get data from the Internet.
If I wrap them in try() then they can be skipped if the
they
decided to do that sometimes?
Paul
Hope this helps.
Spencer
On 11/26/2014 10:45 AM, Paul Gilbert wrote:
Is there a good strategy for testing examples which should not be run
by default? For instance, I have examples which get data from the
Internet. If I wrap them
Is there a good strategy for testing examples which should not be run by
default? For instance, I have examples which get data from the Internet.
If I wrap them in try() then they can be skipped if the Internet is not
available, but may not be tested in cases when I would like to know
about the
You might also consider starting your vignettes with
\begin{Scode}{echo=FALSE,results=hide}
options(continue=" ")
\end{Scode}
Then you get one prompt but it is still easy to cut and paste. This has
been in many of my packages for many years, so I think it would be fair
to assume it is accept
I certainly have longer argument lists with no problem. More likely the
Rd file needs special consideration for %.
Paul
On 11/12/2014 02:11 PM, Therneau, Terry M., Ph.D. wrote:
I am getting failure of build and check, for an Rd file that has a long
argument list.
Guess diagnosis: a quoted stri
I am trying to decide on a name for a directory where I will put some
extra package tests. The main motivation for this is the need to limit
the package test time on CRAN. That is, these are tests that could be in
the tests/ directory and could be run on CRAN, but will take longer than
CRAN lik
I am trying to follow directions at
http://cran.r-project.org/doc/manuals/r-patched/R-exts.html#Suggested-packages
regarding handling suggested packages with requireNamespace() rather
than require(), and I have some questions.
1/ When I do requireNamespace() in a function is the loading of t
On 09/10/2014 06:12 AM, Kirill Müller wrote:
If you don't intend to keep the old business logic in the long run,
perhaps a version control system such as Git can help you. If you use it
in single-user mode, you can think of it as a backup system where you
manually create each snapshot and give
(Please correct me if I'm wrong. I thought I mostly understood this,
finally, but I've made the mistake of thinking I understood something
too many times before.)
On 08/28/2014 10:39 AM, Simon Urbanek wrote:
On Aug 27, 2014, at 6:01 PM, Gavin Simpson
wrote:
On 27 August 2014 15:24, Hadley
On 06/02/2014 12:16 AM, Gabriel Becker wrote:
Carl,
I don't really have a horse in this race other than a strong feeling that
whatever check does should be mandatory.
That having been said, I think it can be argued that the fact that check
does this means that it IS in the R package vignette
On 04/17/2014 02:21 PM, Murray Stokely wrote:
On Thu, Apr 17, 2014 at 6:42 AM, McGehee, Robert
wrote:
Here's my use case: I have a function that pulls arbitrary
financial data from a web service call such as a stock's industry,
price, volume, etc. by reading the web output as a text table. Th
On 04/10/2014 04:34 AM, Kirill Müller wrote:
On 03/26/2014 06:46 PM, Paul Gilbert wrote:
On 03/26/2014 04:58 AM, Kirill Müller wrote:
Dear list
It is possible to store expected output for tests and examples. From the
manual: "If tests has a subdirectory Examples containing a fil
On 04/11/2014 01:43 PM, Simon Urbanek wrote:
Greg,
On Apr 11, 2014, at 11:50 AM, Gregory R. Warnes
wrote:
Hi All,
I see this in the NEWS for R 3.1.0:
type.convert() (and hence by default read.table()) returns a
character vector or factor when representing a numeric input as a
double would
On 03/26/2014 04:58 AM, Kirill Müller wrote:
Dear list
It is possible to store expected output for tests and examples. From the
manual: "If tests has a subdirectory Examples containing a file
pkg-Ex.Rout.save, this is compared to the output file for running the
examples when the latter are ch
On 03/22/2014 01:32 PM, Radford Neal wrote:
From: Philippe GROSJEAN
... for latest CRAN version, we have successfully installed 4999
packages among the 5321 CRAN package on our platform. ... It is
strange that a large portion of R CMD check errors on CRAN occur and
disappear *without any vers
On 01/26/2014 12:31 PM, Uwe Ligges wrote:
On 26.01.2014 17:52, Paul Gilbert wrote:
When checking a package I am getting
* checking package dependencies ... NOTE
No repository set, so cyclic dependency check skipped
How/where do I set the repository so I don't get this note?
When checking a package I am getting
* checking package dependencies ... NOTE
No repository set, so cyclic dependency check skipped
How/where do I set the repository so I don't get this note?
No doubt this is explained in Writing R Extension, but I have not found it.
Paul
__
On 13-12-07 05:21 PM, Hadley Wickham wrote:
The Writing R Extensions manual says that Suggests is for packages which
are required only for examples, which I believe matches Hadley's original
question.
Yes, but without this package they won't be able to run the majority
of examples, which I th
On 13-12-07 01:47 PM, Gabor Grothendieck wrote:
On Sat, Dec 7, 2013 at 1:35 PM, Paul Gilbert wrote:
On 13-12-07 12:19 PM, Gábor Csárdi wrote:
I don't know about this particular case, but in general it makes sense
to rely on a data package. E.g. I am creating a package that does
Bay
o put the data that is used
to calculate the prior into another package, because it will be larger
than the code, and it does not change that often.
Gabor
On Sat, Dec 7, 2013 at 11:51 AM, Paul Gilbert wrote:
Would "Suggests" not work in this situation? I don't understand why you
wo
Would "Suggests" not work in this situation? I don't understand why you
would need Depends. In what sense do you rely on the data only package?
Paul
On 13-12-06 04:20 PM, Hadley Wickham wrote:
Hi all,
What should you do when you rely on a data only package. If you just
"Depend" on it, you get
pathto/python /pathto/python_version.py",intern=TRUE) call and
post-process the one-line text output.
--j
On Thu, Oct 31, 2013 at 12:45 PM, Paul Gilbert mailto:pgilbert...@gmail.com>> wrote:
On 13-10-31 01 :16 PM, Prof Brian Ripley wrote:
On 31/10/2013 15:33, Paul Gilbert
On 13-10-31 01:16 PM, Prof Brian Ripley wrote:
On 31/10/2013 15:33, Paul Gilbert wrote:
On 13-10-31 03:01 AM, Prof Brian Ripley wrote:
On 31/10/2013 00:40, Paul Gilbert wrote:
The old convention was that it went in the exec/ directory, but as you
can see at
http://cran.at.r-project.org
On 13-10-31 03:01 AM, Prof Brian Ripley wrote:
On 31/10/2013 00:40, Paul Gilbert wrote:
The old convention was that it went in the exec/ directory, but as you
can see at
http://cran.at.r-project.org/doc/manuals/r-devel/R-exts.html#Non_002dR-scripts-in-packages
it can be in inst/anyName/. A
The old convention was that it went in the exec/ directory, but as you
can see at
http://cran.at.r-project.org/doc/manuals/r-devel/R-exts.html#Non_002dR-scripts-in-packages
it can be in inst/anyName/. A minor convenience of exec/ is that the
directory has the same name in source and when insta
On 13-10-25 05:21 PM, Henrik Bengtsson wrote:
On Fri, Oct 25, 2013 at 1:39 PM, John Chambers
wrote:
One additional point to Michael's summary:
The "methods" package itself should stay in Depends:, to be safe.
It would be nice to have more detail about when this is necessary,
rather than s
On 13-10-20 04:58 PM, Gabor Grothendieck wrote:
On Sun, Oct 20, 2013 at 4:49 PM, Duncan Murdoch
wrote:
On 13-10-20 4:43 PM, Jonathan Greenberg wrote:
I'm working on an update for my CRAN package "spatial.tools" and I noticed
a new warning when running R CMD CHECK --as-cran:
* checking CRAN
On 13-09-27 06:05 PM, Peter Langfelder wrote:
On Fri, Sep 27, 2013 at 2:50 PM, Kasper Daniel Hansen
wrote:
Peter,
This is a relatively "new" warning from R CMD check (for some definition of
new). The authors of Hmisc have clearly not yet gone through the process of
cleaning it up, as you ar
On 13-09-23 08:20 PM, Hadley Wickham wrote:
Brian Ripley's reply describes how it is done in the tools package. For
example, as I sent privately to Jeroen,
x <- system2("Rscript", "-e \"install.packages('MASS',
repos='http://probability.ca/cran')\"", stdout=TRUE, stderr=TRUE)
captures all of
Simon
Your idea to use SQLite and the nature of some of the sorting and
extracting you are suggesting makes me wonder why you are thinking of R
data structures as the home for the data storage. I would be inclined to
put the data in an SQL database as the prime repository, then extract
parts
On 13-09-16 05:19 AM, Uwe Ligges wrote:
...
Yes, and I could see really rare circumstances where vignette building
takes a long time and the maintainer decides not to build vignettes as
part of the daily checks.
...
I thought 'BuildVignettes: FALSE' only turns of assembling the pdf, all
the co
(subject changed from Re: [Rd] declaring package dependencies )
...
Yes useful. But that includes a package build system (which is what
breaks on
R-Forge). If you could do that on a six-pack then could you fix R-Forge
on a
three-pack first please? The R-Forge build system is itself an open source
On 13-09-14 07:20 PM, Duncan Murdoch wrote:
On 13-09-14 12:19 PM, Paul Gilbert wrote:
On 13-09-14 09:04 AM, Duncan Murdoch wrote:
On 13-09-13 12:00 PM, Dirk Eddelbuettel wrote:
On 13 September 2013 at 11:42, Paul Gilbert wrote:
| On 13-09-13 11:02 AM, Dirk Eddelbuettel wrote:
| > I
On 13-09-14 09:04 AM, Duncan Murdoch wrote:
On 13-09-13 12:00 PM, Dirk Eddelbuettel wrote:
On 13 September 2013 at 11:42, Paul Gilbert wrote:
| On 13-09-13 11:02 AM, Dirk Eddelbuettel wrote:
| > It's not so much Rcpp itself or my 20-ish packages but the fact
that we (as
| >
On 13-09-13 11:02 AM, Dirk Eddelbuettel wrote:
On 13 September 2013 at 10:38, Duncan Murdoch wrote:
| On 13/09/2013 10:18 AM, Dirk Eddelbuettel wrote:
| > On 13 September 2013 at 09:51, Duncan Murdoch wrote:
| > | Changes are generally announced in the NEWS.Rd file long before release,
| > | b
Michael
(Several of us are struggling with these changes, so my comments are
from the newly initiated point of view, rather than the fully
knowledgeable.)
On 13-09-12 09:38 AM, Michael Friendly wrote:
I received the following email note re: the vcdExtra package
A vcd update has shown that
This is related to the recent thread on correct NAMESPACE approach when writing
S3 methods. If your methods are S4 I think pkgB does not need to export the
generic. Just export the method and everything works magically and your problem
disappears. For S3 methods there seems to be the difficultly
On 13-08-28 05:13 PM, Hadley Wickham wrote:
3/ Some functions are exported normally but hidden by using "." in the
beginning of their names. Other package maintainers would know they exist,
but end users would not so easily find them. (Duncan's other suggestion of
using \keyword{internal} in
ol over our own test cases.
IMHO, testing is the justification of CRAN's reputation and quality,
and that is a part of what CRAN does.
In God we trust, and everyone else should bring tests.
Regards,
Yihui
--
Yihui Xie
Web: http://yihui.name
Department of Statistics, Iowa State University
2
On 13-08-28 12:29 PM, Marc Schwartz wrote:
On Aug 28, 2013, at 11:15 AM, Paul Gilbert wrote:
I have a package (TSdbi) which provides end user functions that I export, and
several utilities for plugin packages (e.g. TSMySQL) that I do not export
because I do not intend them to be exposed to
I have a package (TSdbi) which provides end user functions that I
export, and several utilities for plugin packages (e.g. TSMySQL) that I
do not export because I do not intend them to be exposed to end users. I
call these from the plugin packages using TSdbi::: but that now
produces a note in
On 13-08-26 12:04 PM, Gavin Simpson wrote:
Right Henrik, but then you have to document it or R CMD check raises a
Warning, which is less likely to pass muster when submitting to CRAN.
So you document that method on your existing method's Rd page (just
via an \alias{}), which is fine until the u
Simon
Thanks, that helps a lot, but see below ..
On 13-07-31 08:35 PM, Simon Urbanek wrote:
On Jul 31, 2013, at 7:14 PM, Paul Gilbert wrote:
I am being asked to modernize the Depends line in the DESCRIPTION
file of some packages. Writing R Extensions says:
The general rules are
Packages
I am being asked to modernize the Depends line in the DESCRIPTION file
of some packages. Writing R Extensions says:
The general rules are
Packages whose namespace only is needed to load the package using
library(pkgname) must be listed in the ‘Imports’ field and not in
the ‘Depends
Avraham
I resolved this only by switching to a different BLAS on the 32 bit
machine.Since no one else seemed to be having problems, I considered it
possible that there was a hardware issue on my old 32 bit machine. The R
check test failed somewhat randomly, but often. most disconcertingly, it
Being generally uninformed about Windows, I have to admit to almost
total confusion trying to follow this thread. However, since I have
recently been trying to do something in Windows, I would appreciate a
newbie friendly explanation of a few points:
-Rtools is used to build R and to build (so
On 13-04-15 03:19 PM, Prof Brian Ripley wrote:
On 15/04/2013 14:11, John Fox wrote:
Dear Brian,
On Mon, 15 Apr 2013 06:56:26 +0100
Prof Brian Ripley wrote:
POSIX-style execute permission isn't a Windows concept, so it was
fortuitous this ever worked. One possibility is that Cygwin was
in
] "grid" "KernSmooth" "lattice""MASS" "Matrix"
[16] "methods""mgcv" "nlme" "nnet" "parallel"
[21] "rpart" "spatial""splines"
On 13-04-03 11:31 AM, Duncan Murdoch wrote:
On 03/04/2013 7:25 AM, Stefan Boehringer wrote:
Dear all,
I am trying to submit an R-package to CRAN. In preparation I do run
R_INSTALL_TAR=/bin/tar R CMD check --as-cran
parallelize.dynamic_0.9.tar.gz
and the command finishes without warnings or
"make check" is failing on reg-test3.R with a message that survival was
built with an older version of R. (On my Ubuntu 32 bit and Ubuntu 64
bit machines). Why would "make check" be looking anywhere that it would
find something built with an older version of R?
~/RoboAdmin/R-3.0.0/tests$ ta
(More on the original question further below.)
On 13-03-05 09:48 AM, Cook, Malcolm wrote:
All,
What got me started on this line of inquiry was my attempt at
balancing the advantages of performing a periodic (daily or weekly)
update to the 'release' version of locally installed R/Bioconductor
pa
switch among them at the command line.
Aaron
On Fri, Jan 18, 2013 at 02:04:13PM -0500, Paul Gilbert wrote:
(somewhat related to thread [Rd] R CMD check not reading R_LIBS )
For many years I have maintained R versions by building R
(./configure ; make) in a directory indicating the version number
(somewhat related to thread [Rd] R CMD check not reading R_LIBS )
For many years I have maintained R versions by building R (./configure ;
make) in a directory indicating the version number, putting the
directory/bin on my path, and setting R_LIBS_SITE.
It seems only one version can easily b
I'm surprised this works on Windows and Mac, since RMonetDB does not
seem to be on CRAN. I thought it was still a requirement that
dependencies need to be on CRAN (which makes development difficult for
related packages like this).
A related long standing request is that R-forge checking look f
On 12-12-12 02:19 PM, Prof Brian Ripley wrote:
On 12/12/2012 18:33, Paul Gilbert wrote:
Am I correct in thinking that the ‘SystemRequirements’ field in a
package DESCRIPTION file is purely descriptive, there are no standard
elements that can be extracted by parsing it and used automatically
Am I correct in thinking that the ‘SystemRequirements’ field in a
package DESCRIPTION file is purely descriptive, there are no standard
elements that can be extracted by parsing it and used automatically?
This field does not seem to be widely used, even for some obvious cases
like backend data
I appreciate your problem, and getting reproducible random generator
results on a parallel system is something to be careful about. However,
I would avoid making it too easy to have a fixed seed. In earlier days
there were mistakes too often made by users inadvertently using the same
seed over
ul to automate the
interaction with servers retrieving automatically the name-value pairs
required by the server (parsing the page source code) instead of
examining in each web page the appropiate fields.
2012/10/30, Paul Gilbert :
Jose
As far as getting to the data, I think the best way to do thi
el Becker wrote:
I haven't used it extensively myself, and can't speak to it's current
state but on quick inspection RHTMLForms seems worth a look for what you
want.
http://www.omegahat.org/RHTMLForms/
~G
On Tue, Oct 30, 2012 t 5:38 AM, Paul Gilbert mailto:pgilbert...@gmail.com>>
ively myself, and can't speak to it's current
state but on quick inspection RHTMLForms seems worth a look for what you
want.
http://www.omegahat.org/RHTMLForms/
~G
On Tue, Oct 30, 2012 t 5:38 AM, Paul Gilbert mailto:pgilbert...@gmail.com>> wrote:
I don't know of an easy way
I don't know of an easy way to do this in R. I've been doing something
similar with python scripts called from R. If anyone knows how to do
this with just R, I would appreciate hearing too.
Paul
On 12-10-29 04:11 PM, jose ramon mazaira wrote:
Hi. I'm trying to write an application to retrieve
On 12-10-26 12:15 PM, Prof Brian Ripley wrote:
On 26/10/2012 16:37, Paul Gilbert wrote:
Is --with-blas="-lgoto2" a known problem (other than possibly not being
the preferred choice)?
And what precisely is it? And what chipset are you using?
I thought I had been testing RC wit
Is --with-blas="-lgoto2" a known problem (other than possibly not being
the preferred choice)?
I thought I had been testing RC with the same setup I regularly use, but
I now see there was a slight difference. I am now getting the following
failure in make check on 32-bit Ubuntu 12.04, config
Yes, the button is still there if you are logged in and unhide it. (You
probably also need the appropriate developer permission.) Beware that
R-forge needs to indicate the package build status is current, but also,
if you have just made svn updates it may falsely indicate current. Check
the rev
( subject changed from Re: [Rd] R-devel Digest, Vol 115, Issue 18 )
I have the impression from this, and previous discussions on the
subject, that package developers and CRAN maintainers are talking at
cross-purposes. Many package maintainers are thinking that they should
be responsible for ch
On 12-09-18 07:23 PM, Duncan Murdoch wrote:
On 12-09-18 5:40 PM, Paul Gilbert wrote:
( A similar problem is also reported by Sebastian P. Luque with
library(maptools)
library(trip)
in the vignette as below ).
I am writing a vignette which loads RMySQL and RPostgreSQL. This
produces
( A similar problem is also reported by Sebastian P. Luque with
library(maptools)
library(trip)
in the vignette as below ).
I am writing a vignette which loads RMySQL and RPostgreSQL. This
produces the warning:
Loading required package: DBI
Warning in .simpleDuplicateClass(def, prev) :
a variety of mechanism suggested on R-devel for
subverting the CRAN checks of the vignette code. My interpretation is
that these should generally be considered contrary to the spirit of what
CRAN maintainers are attempting to do, and package maintainers should
expect continuing problems as
Is there a reason for not using a vignette or putting a file in the
demo/ directory? This seems like the sort of thing for which they are
intended.
Paul
On 12-05-25 03:33 PM, Wei Hao wrote:
Hi all:
I'm working on a project that I have packaged for ease of
distribution. The different simula
On 12-04-12 03:15 AM, Uwe Ligges wrote:
On 12.04.2012 01:16, Paul Gilbert wrote:
On 12-04-11 04:41 PM, Terry Therneau wrote:
Context: R2.15-0 on Ubuntu.
1. I get a WARNING from CMD check for "Package vignette(s) without
corresponding PDF:
In this case the vignettes directory had
On 12-04-11 04:41 PM, Terry Therneau wrote:
Context: R2.15-0 on Ubuntu.
1. I get a WARNING from CMD check for "Package vignette(s) without
corresponding PDF:
In this case the vignettes directory had both the pdf and Rnw; do I need
to move the pdf to inst/doc?
Yes, you need to put the pdf in
Mark
I would like to clarify two specific points.
On 12-03-31 04:41 AM, mark.braving...@csiro.au wrote:
> ...
Someone has subsequently decided that code should look a certain way, and has
added a check that
isn't in the language itself-- but they haven't thought of everything, and of
course t
(Renamed from "Re: [Rd] CRAN policies" because the of the
muli-threading of that subject.)
Claudia
Actually, my version numbers are year-month dates, eg 2012.3-1, although
I don't set them automatically.
I have had some additional off-line discussion on this. The problem is this:
Now when
On 12-03-29 09:29 PM, mark.braving...@csiro.au wrote:
> I'm concerned this thread is heading the wrong way, towards
> techno-fixes for imaginary problems. R package-building is already
> encumbered with a huge set of complicated rules, and more
> instructions/rules eg for metadata would make thin
I have packages where I know CRAN and other test platforms do not have
all the resources to build the vignettes, for example, access to
databases. Previously I think putting
BuildVignettes: false
in the DESCRIPTION file resolved this, by preventing CRAN checks from
attempting to run the vi
An associated problem, for the wish list, is that it would be nice for
package developers to have a way to automatically distinguish between
NOTEs that can usually be ignored (e.g. a package suggests a package
that is not available for cross reference checks - I have several case
where the sugg
On 12-03-27 10:59 AM, Uwe Ligges wrote:
On 27.03.2012 16:17, Paul Gilbert wrote:
One of the things I have noticed with the R 2.15.0 RC and --as-cran is
that the I have to bump the version number of the working copy of my
packages immediately after putting a version on CRAN, or I get an
One of the things I have noticed with the R 2.15.0 RC and --as-cran is
that the I have to bump the version number of the working copy of my
packages immediately after putting a version on CRAN, or I get an
message about version suitability. This is probably a good thing for
packages that I have
n though in my case either would have worked, my feeling is that
there could be cases where it is a problem, so package developers should
be using setAs() explicitly to reduce ambiguities, as you say. And
because of this you should be issuing a warning not just a note. And, if
you do issue a warn
On 12-03-25 05:29 PM, Paul Gilbert wrote:
John
Here is the definition of the TSMySQLConnection class, and a few other
things. This is a simplified example that produces the message, but
unfortunately will not work unless you have a MySQL database to connect
to. (I do get the same problem with
version is dbExistsTable(con, "vintageAlias") left unevaluated in the
result from new?
As you can tell, I'm struggling a bit with interpreting the information
from the note. Also, if it were a warning I could set it to stop, and
then traceback to what was causing the problem. As
(I think this is being caused by the new methods package in RC.)
In the RC (March 24) some of my packages are generating a Note
Note: Method with signature "MySQLConnection#integer" chosen for
function "coerce",
target signature "TSMySQLConnection#integer".
"dbObjectId#integer" would also be
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