Thank you for pointing me to this resource, works like a charm! > On Apr 9, 2021, at 12:14 AM, Jeff Newmiller <jdnew...@dcn.davis.ca.us> wrote: > > Maybe use r.rsp? > > https://blog.r-hub.io/2020/06/03/vignettes/ > How to include my pre-print / cheatsheet as a PDF vignette? > > > > On April 8, 2021 12:39:20 PM PDT, "Dr. Connie Brett" > <con...@aggregate-genius.com> wrote: >> Hello, >> I have a package (DGEobj) that depends on the Ensembl service to look >> up information used to build the vignette. My builds work fine on >> Travis, locally and on R-hub. Occasionally I have seen blips with >> regard to internet-based resources not being available, and my vignette >> depends on a number of internet resources to get example datasets. >> However when I submitted my package to CRAN today the failures Windows >> and Debian were that the server certificate verification failed ( SSL >> certificate problem: unable to get local issuer certificate). >> I’m not sure if there is something I can do about this or if this is >> considered a "false positive" per the email - it seems like a "wait and >> retry" issue. I don’t want to be rude uploading the package again >> without a change or erroneously emailing in response to the rejection. >> How should this be handled properly now and into the future? It isn’t >> feasible to not use Ensembl for this vignette. >> Thanks for your insight and feedback! >> >> Flavor: r-devel-windows-ix86+x86_64 >> Check: re-building of vignette outputs, Result: WARNING >> Error(s) in re-building vignettes: >> --- re-building 'DGEobj_Overview.Rmd' using rmarkdown >> >> Ensembl site unresponsive, trying asia mirror >> Quitting from lines 259-280 (DGEobj_Overview.Rmd) >> Error: processing vignette 'DGEobj_Overview.Rmd' failed with >> diagnostics: >> SSL certificate problem: unable to get local issuer certificate >> --- failed re-building 'DGEobj_Overview.Rmd' >> >> SUMMARY: processing the following file failed: >> 'DGEobj_Overview.Rmd' >> >> Error: Vignette re-building failed. >> Execution halted >> >> >> Flavor: r-devel-linux-x86_64-debian-gcc >> Check: re-building of vignette outputs, Result: WARNING >> Error(s) in re-building vignettes: >> --- re-building 'DGEobj_Overview.Rmd' using rmarkdown >> >> Ensembl site unresponsive, trying asia mirror >> Quitting from lines 235-256 (DGEobj_Overview.Rmd) >> Error: processing vignette 'DGEobj_Overview.Rmd' failed with >> diagnostics: >> server certificate verification failed. CAfile: none CRLfile: none >> --- failed re-building 'DGEobj_Overview.Rmd' >> >> SUMMARY: processing the following file failed: >> 'DGEobj_Overview.Rmd' >> >> Error: Vignette re-building failed. >> Execution halted >> [[alternative HTML version deleted]] >> >> ______________________________________________ >> R-package-devel@r-project.org mailing list >> https://stat.ethz.ch/mailman/listinfo/r-package-devel > > -- > Sent from my phone. Please excuse my brevity.
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