Hello,
I have a package (DGEobj) that depends on the Ensembl service to look up
information used to build the vignette. My builds work fine on Travis, locally
and on R-hub. Occasionally I have seen blips with regard to internet-based
resources not being available, and my vignette depends on a number of internet
resources to get example datasets. However when I submitted my package to CRAN
today the failures Windows and Debian were that the server certificate
verification failed ( SSL certificate problem: unable to get local issuer
certificate).
I’m not sure if there is something I can do about this or if this is considered
a "false positive" per the email - it seems like a "wait and retry" issue. I
don’t want to be rude uploading the package again without a change or
erroneously emailing in response to the rejection.
How should this be handled properly now and into the future? It isn’t feasible
to not use Ensembl for this vignette.
Thanks for your insight and feedback!
Flavor: r-devel-windows-ix86+x86_64
Check: re-building of vignette outputs, Result: WARNING
Error(s) in re-building vignettes:
--- re-building 'DGEobj_Overview.Rmd' using rmarkdown
Ensembl site unresponsive, trying asia mirror
Quitting from lines 259-280 (DGEobj_Overview.Rmd)
Error: processing vignette 'DGEobj_Overview.Rmd' failed with diagnostics:
SSL certificate problem: unable to get local issuer certificate
--- failed re-building 'DGEobj_Overview.Rmd'
SUMMARY: processing the following file failed:
'DGEobj_Overview.Rmd'
Error: Vignette re-building failed.
Execution halted
Flavor: r-devel-linux-x86_64-debian-gcc
Check: re-building of vignette outputs, Result: WARNING
Error(s) in re-building vignettes:
--- re-building 'DGEobj_Overview.Rmd' using rmarkdown
Ensembl site unresponsive, trying asia mirror
Quitting from lines 235-256 (DGEobj_Overview.Rmd)
Error: processing vignette 'DGEobj_Overview.Rmd' failed with diagnostics:
server certificate verification failed. CAfile: none CRLfile: none
--- failed re-building 'DGEobj_Overview.Rmd'
SUMMARY: processing the following file failed:
'DGEobj_Overview.Rmd'
Error: Vignette re-building failed.
Execution halted
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