Hi Barbara -- ask on the Bioconductor mailing list.
http://bioconductor.org/docs/mailList.html
Include the output of the command sessionInfo() after the failure. Be
sure to update to a current version of R / Bioconductor, for the latter
following 'Update installed Bioconductor packages' at
http://bioconductor.org/docs/install
Martin
Barbara Cegielska wrote:
------------------------------------------------------------------------
Subject:
loading SPOT file
From:
Barbara Cegielska <bar...@ibch.poznan.pl>
Date:
Wed, 06 May 2009 16:48:35 +0200
To:
r-help-boun...@r-project.org
To:
r-help-boun...@r-project.org
I have problem with loading SPOT files.
Sample of my operations in R object
> fromfile=TRUE
> fext="spot"
> rawboxplot=TRUE
> flagi="Flags"
>
> f<-function(x) as.numeric(x$Flags > -99)
> targets<-readTargets("ApoAITargets.txt")
>
> if (fromfile){
+ files<-dir(pattern=fext)
+ } else {
+ dane.maTargets<-read.marrayInfo(filename=targets)
+ phenoData<-read.AnnotatedDataFrame(filename=targets)
+ files<-targets$FileName
+ }
>
>
> RG <- readSpot(files, as.is = TRUE, galfile="ApoAI.gal", DEBUG=FALSE,
skip=-1, quote = "\"",
+ fill = TRUE)
Error in readLines(f, n = skip + 1) : invalid 'n' argument
I would like to loead Apo.AI data from:
http://bioinf.wehi.edu.au/limmaGUI/DataSets.html
Thank you in advance.
Regards,
B.
------------------------------------------------------------------------
______________________________________________
R-help@r-project.org mailing list
https://stat.ethz.ch/mailman/listinfo/r-help
PLEASE do read the posting guide http://www.R-project.org/posting-guide.html
and provide commented, minimal, self-contained, reproducible code.
--
Martin Morgan
Computational Biology / Fred Hutchinson Cancer Research Center
1100 Fairview Ave. N.
PO Box 19024 Seattle, WA 98109
Location: Arnold Building M1 B861
Phone: (206) 667-2793
______________________________________________
R-help@r-project.org mailing list
https://stat.ethz.ch/mailman/listinfo/r-help
PLEASE do read the posting guide http://www.R-project.org/posting-guide.html
and provide commented, minimal, self-contained, reproducible code.
