--- Begin Message ---
I have problem with loading SPOT files.
Sample of my operations in R object
> fromfile=TRUE
> fext="spot"
> rawboxplot=TRUE
> flagi="Flags"
>
> f<-function(x) as.numeric(x$Flags > -99)
> targets<-readTargets("ApoAITargets.txt")
>
> if (fromfile){
+ files<-dir(pattern=fext)
+ } else {
+ dane.maTargets<-read.marrayInfo(filename=targets)
+ phenoData<-read.AnnotatedDataFrame(filename=targets)
+ files<-targets$FileName
+ }
>
>
> RG <- readSpot(files, as.is = TRUE, galfile="ApoAI.gal", DEBUG=FALSE,
skip=-1, quote = "\"",
+ fill = TRUE)
Error in readLines(f, n = skip + 1) : invalid 'n' argument
I would like to loead Apo.AI data from:
http://bioinf.wehi.edu.au/limmaGUI/DataSets.html
Thank you in advance.
Regards,
B.
--- End Message ---
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