Hi Ports, May I request some developer to have a look and commit this port? Earlier, jca made a few changes (attached) and commented that the port looked good. I also tested it once again and it installs, runs as expected.
Senthil On Sat, 12 Nov 2016, Senthil Kumar M wrote: > > > On Sat, 12 Nov 2016, Jeremie Courreges-Anglas wrote: > > > Senthil Kumar M <senthil.deb...@gmail.com> writes: > > > > > Hello ports, > > > > > > HMMER is used for searching sequence databases for sequence homologs, > > > and for making sequence alignments. It implements methods using > > > probabilistic models called profile hidden Markov models (profile > > > HMMs). (http://hmmer.org) > > > > > > The latest version 3.1b2 compiles and builds without any additional > > > patches/errors on OpenBSD, unlike previous versions (see: `h104' > > > on: > > > https://raw.githubusercontent.com/EddyRivasLab/hmmer/master/documentation/bugs/BUGTRAX > > > . > > > > > > HMMER is an indispensable tool for bioinformatics research and it > > > would be neat to have it available on OpenBSD. > > > > > > I have tested this on amd64, additional tests, comments are welcome. > > > > Here's a updated tarball with the following changes: > > - more spacing in Makefile > > - move PKGNAME to hmmer-3.1beta2, per packages-specs(7) > > - I added your name to the mail address in MAINTAINER > > - "License GPLv3 only": "GPLv3" is enough, else it would be "GPLv3+" > > - make V=1 to show build commands > > - disable sse(2) except on amd64 > > - kill last paragraph in DESCR, trim the third one and merge it with the > > first one. Those bits didn't seem particularly relevant for a package > > description > > > > Looks good to me as is. Are the executables in this package useful > > alone, or do you use it only for the library? > > > > > > Hi Jeremie, > > Thank you so much for taking time to look into this and your inputs. I > checked the updated tarball on amd64 (running Nov. 9 snapshot) and it > works (installs and runs) as expected. > > The executables in this package are useful by themselves. > > Senthil >
hmmer.tgz
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