Thank you for your answers, it was helpful to know that I do not have to merge the files to run the analysis.
I runned compare.evol.rates and it marks the following error "tree must be of class phylo". If I check the class of my tree: class(tree2), it indicates that it is indeed class phylo. It is worth noting that when I run compare.evol.rates, "phy" is not an option when I use $ symbol on tree2 (tree2 is the name of my phylogenetic tree). I really appreciate your attention and help. El dom, 14 feb 2021 a las 11:24, Adams, Dean [EEOB] (<[email protected]>) escribió: > Mariana, > > > > The phylogeny and data do not be combined into a single file, but do need > to be called separately by the function. If you see the help file, the > example has: > > > > compare.evol.rates(A=Y.gpa$coords, phy=plethspecies$phy, > > method="simulation",gp=gp.end,iter=999) > > > > The ‘A=Y.gpa$coords’ portion is where you specify the data, and the > ‘phy=plethspecies$phy’ is where you specify the phylogeny. In the case of > this example, both are part of an object ‘plethspecies’. But they do not > have to be. It could be: > > > > ‘A=mydata’ and ‘phy = myphy’ or whatever else you have called them when > you read the data into R from your data files. > > > > Hope this helps. > > > > Dean > > > > Dr. Dean C. Adams > > Director of Graduate Education, EEB Program > > Professor > > Department of Ecology, Evolution, and Organismal Biology > > Iowa State University > > https://www.eeob.iastate.edu/faculty/adams/ > > phone: 515-294-3834 > > > > *From:* [email protected] <[email protected]> *On > Behalf Of *Mariana Díaz Santana Iturrios > *Sent:* Saturday, February 13, 2021 12:36 PM > *To:* [email protected] > *Subject:* [MORPHMET2] Doubt regarding compare.evol.rates function of > Geomorph r package > > > > Dear all, > > > > I've been trying to use "compare.evol.rates" function of Geomorph r > package without success. > > I account with two separate files: a phylogenetic tree, and a landmark > matrix obtained from generalized procrustes analysis. I suspect I somehow > have to merge these into a single file although I don't know how to. I > appreciate any help on the matter. > > > > My best regards, > > > > -- > > *Dr. Mariana Díaz-Santana-Iturrios* > > *Postdoctoral Position* > > *Facultad de Ciencias de La Vida* > > *Universidad Andres Bello* > > *Santiago, Chile* > > *Cell phone number (México)(+52)612-16-144-35* > > *ORCID 0000-0002-5253-5395* > > > > -- > You received this message because you are subscribed to the Google Groups > "Morphmet" group. > To unsubscribe from this group and stop receiving emails from it, send an > email to [email protected]. > To view this discussion on the web visit > https://groups.google.com/d/msgid/morphmet2/CAPmxoqRwsw05ox_tL0FPLQEmYOu6uroBSQg7eyXBvr0_yJEbCw%40mail.gmail.com > <https://groups.google.com/d/msgid/morphmet2/CAPmxoqRwsw05ox_tL0FPLQEmYOu6uroBSQg7eyXBvr0_yJEbCw%40mail.gmail.com?utm_medium=email&utm_source=footer> > . > -- *Dr. Mariana Díaz-Santana-Iturrios* *Postdoctoral Position* *Facultad de Ciencias de La Vida* *Universidad Andres Bello* *Santiago, Chile* *Cell phone number (México)(+52)612-16-144-35* *ORCID 0000-0002-5253-5395* -- You received this message because you are subscribed to the Google Groups "Morphmet" group. To unsubscribe from this group and stop receiving emails from it, send an email to [email protected]. To view this discussion on the web visit https://groups.google.com/d/msgid/morphmet2/CAPmxoqTLa2Jc%2ByhZr5C2Z8dmu0yT%2BvKbk_wm64%2BdTChiVTyXiQ%40mail.gmail.com.
