Mariana, The phylogeny and data do not be combined into a single file, but do need to be called separately by the function. If you see the help file, the example has:
compare.evol.rates(A=Y.gpa$coords, phy=plethspecies$phy, method="simulation",gp=gp.end,iter=999) The ‘A=Y.gpa$coords’ portion is where you specify the data, and the ‘phy=plethspecies$phy’ is where you specify the phylogeny. In the case of this example, both are part of an object ‘plethspecies’. But they do not have to be. It could be: ‘A=mydata’ and ‘phy = myphy’ or whatever else you have called them when you read the data into R from your data files. Hope this helps. Dean Dr. Dean C. Adams Director of Graduate Education, EEB Program Professor Department of Ecology, Evolution, and Organismal Biology Iowa State University https://www.eeob.iastate.edu/faculty/adams/ phone: 515-294-3834 From: [email protected] <[email protected]> On Behalf Of Mariana Díaz Santana Iturrios Sent: Saturday, February 13, 2021 12:36 PM To: [email protected] Subject: [MORPHMET2] Doubt regarding compare.evol.rates function of Geomorph r package Dear all, I've been trying to use "compare.evol.rates" function of Geomorph r package without success. I account with two separate files: a phylogenetic tree, and a landmark matrix obtained from generalized procrustes analysis. I suspect I somehow have to merge these into a single file although I don't know how to. I appreciate any help on the matter. My best regards, -- Dr. Mariana Díaz-Santana-Iturrios Postdoctoral Position Facultad de Ciencias de La Vida Universidad Andres Bello Santiago, Chile Cell phone number (México)(+52)612-16-144-35 ORCID 0000-0002-5253-5395 -- You received this message because you are subscribed to the Google Groups "Morphmet" group. To unsubscribe from this group and stop receiving emails from it, send an email to [email protected]<mailto:[email protected]>. To view this discussion on the web visit https://groups.google.com/d/msgid/morphmet2/CAPmxoqRwsw05ox_tL0FPLQEmYOu6uroBSQg7eyXBvr0_yJEbCw%40mail.gmail.com<https://groups.google.com/d/msgid/morphmet2/CAPmxoqRwsw05ox_tL0FPLQEmYOu6uroBSQg7eyXBvr0_yJEbCw%40mail.gmail.com?utm_medium=email&utm_source=footer>. -- You received this message because you are subscribed to the Google Groups "Morphmet" group. To unsubscribe from this group and stop receiving emails from it, send an email to [email protected]. To view this discussion on the web visit https://groups.google.com/d/msgid/morphmet2/CH2PR04MB661739A7E75670B2743B8E8EA2899%40CH2PR04MB6617.namprd04.prod.outlook.com.
