Your message dated Sat, 12 Apr 2025 20:49:12 +0000
with message-id <e1u3hmq-00cbbx...@fasolo.debian.org>
and subject line Bug#1102774: fixed in rpy2 3.5.17-2
has caused the Debian Bug report #1102774,
regarding rpy2: FTBFS: /usr/bin/ld: cannot find -lzstd: No such file or
directory
to be marked as done.
This means that you claim that the problem has been dealt with.
If this is not the case it is now your responsibility to reopen the
Bug report if necessary, and/or fix the problem forthwith.
(NB: If you are a system administrator and have no idea what this
message is talking about, this may indicate a serious mail system
misconfiguration somewhere. Please contact ow...@bugs.debian.org
immediately.)
--
1102774: https://bugs.debian.org/cgi-bin/bugreport.cgi?bug=1102774
Debian Bug Tracking System
Contact ow...@bugs.debian.org with problems
--- Begin Message ---
Package: src:rpy2
Version: 3.5.17-1
Severity: serious
Tags: ftbfs trixie sid
Dear maintainer:
During a rebuild of all packages in unstable, your package failed to build:
--------------------------------------------------------------------------------
[...]
debian/rules clean
dh clean --with python3 --buildsystem=pybuild
debian/rules override_dh_auto_clean
make[1]: Entering directory '/<<PKGBUILDDIR>>'
echo "Skipping"
Skipping
make[1]: Leaving directory '/<<PKGBUILDDIR>>'
dh_autoreconf_clean -O--buildsystem=pybuild
debian/rules override_dh_clean
make[1]: Entering directory '/<<PKGBUILDDIR>>'
dh_clean
make[1]: Leaving directory '/<<PKGBUILDDIR>>'
debian/rules binary
dh binary --with python3 --buildsystem=pybuild
dh_update_autotools_config -O--buildsystem=pybuild
dh_autoreconf -O--buildsystem=pybuild
dh_auto_configure -O--buildsystem=pybuild
I: pybuild base:311: python3.13 setup.py config
/usr/bin/ld: cannot find -lzstd: No such file or directory
collect2: error: ld returned 1 exit status
Traceback (most recent call last):
File "/usr/lib/python3/dist-packages/setuptools/_distutils/spawn.py", line
70, in spawn
subprocess.check_call(cmd, env=_inject_macos_ver(env))
~~~~~~~~~~~~~~~~~~~~~^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
File "/usr/lib/python3.13/subprocess.py", line 419, in check_call
raise CalledProcessError(retcode, cmd)
subprocess.CalledProcessError: Command '['/usr/bin/x86_64-linux-gnu-gcc',
'/tmp/tmp_pw_r_0gujo9hr/tmp/tmp_pw_r_0gujo9hr/test_pw_r.o', '-L/usr/lib/R/lib',
'-lR', '-lpcre2-8', '-ldeflate', '-lzstd', '-llzma', '-lbz2', '-lz', '-ltirpc',
'-lrt', '-ldl', '-lm', '-licuuc', '-licui18n', '-o',
'/tmp/tmp_pw_r_0gujo9hr/test_pw_r']' returned non-zero exit status 1.
The above exception was the direct cause of the following exception:
Traceback (most recent call last):
File "/usr/lib/python3/dist-packages/setuptools/_distutils/unixccompiler.py",
line 287, in link
self.spawn(linker + ld_args)
~~~~~~~~~~^^^^^^^^^^^^^^^^^^
File "/usr/lib/python3/dist-packages/setuptools/_distutils/ccompiler.py",
line 1052, in spawn
spawn(cmd, dry_run=self.dry_run, **kwargs)
~~~~~^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
File "/usr/lib/python3/dist-packages/setuptools/_distutils/spawn.py", line
76, in spawn
raise DistutilsExecError(
f"command {_debug(cmd)!r} failed with exit code {err.returncode}"
) from err
distutils.errors.DistutilsExecError: command '/usr/bin/x86_64-linux-gnu-gcc'
failed with exit code 1
During handling of the above exception, another exception occurred:
Traceback (most recent call last):
File "/<<PKGBUILDDIR>>/setup.py", line 141, in <module>
c_extension_status = get_r_c_extension_status(
r_home,
force_ok = os.environ.get('RPY2_API_FORCE') == 'True'
)
File "/<<PKGBUILDDIR>>/setup.py", line 121, in get_r_c_extension_status
status = get_c_extension_status(libraries=c_ext.libraries,
include_dirs=c_ext.include_dirs,
library_dirs=c_ext.library_dirs)
File "/<<PKGBUILDDIR>>/setup.py", line 82, in get_c_extension_status
compiler.link_executable(
~~~~~~~~~~~~~~~~~~~~~~~~^
compiler.compile([src_file], output_dir=tmp_dir,
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
...<2 lines>...
libraries=libraries,
^^^^^^^^^^^^^^^^^^^^
library_dirs=library_dirs)
^^^^^^^^^^^^^^^^^^^^^^^^^^
File "/usr/lib/python3/dist-packages/setuptools/_distutils/ccompiler.py",
line 788, in link_executable
self.link(
~~~~~~~~~^
CCompiler.EXECUTABLE,
^^^^^^^^^^^^^^^^^^^^^
...<11 lines>...
target_lang,
^^^^^^^^^^^^
)
^
File "/usr/lib/python3/dist-packages/setuptools/_distutils/unixccompiler.py",
line 289, in link
raise LinkError(msg)
distutils.errors.LinkError: command '/usr/bin/x86_64-linux-gnu-gcc' failed with
exit code 1
E: pybuild pybuild:389: configure: plugin distutils failed with: exit code=1:
python3.13 setup.py config
dh_auto_configure: error: pybuild --configure -i python{version} -p 3.13
returned exit code 13
make: *** [debian/rules:19: binary] Error 25
dpkg-buildpackage: error: debian/rules binary subprocess returned exit status 2
--------------------------------------------------------------------------------
The above is just how the build ends and not necessarily the most relevant part.
If required, the full build log is available here:
https://people.debian.org/~sanvila/build-logs/202504/
About the archive rebuild: The build was made on virtual machines from AWS,
using sbuild and a reduced chroot with only build-essential packages.
If you could not reproduce the bug please contact me privately, as I
am willing to provide ssh access to a virtual machine where the bug is
fully reproducible.
If this is really a bug in one of the build-depends, please use
reassign and add an affects on src:rpy2, so that this is still
visible in the BTS web page for this package.
Thanks.
--- End Message ---
--- Begin Message ---
Source: rpy2
Source-Version: 3.5.17-2
Done: Dirk Eddelbuettel <e...@debian.org>
We believe that the bug you reported is fixed in the latest version of
rpy2, which is due to be installed in the Debian FTP archive.
A summary of the changes between this version and the previous one is
attached.
Thank you for reporting the bug, which will now be closed. If you
have further comments please address them to 1102...@bugs.debian.org,
and the maintainer will reopen the bug report if appropriate.
Debian distribution maintenance software
pp.
Dirk Eddelbuettel <e...@debian.org> (supplier of updated rpy2 package)
(This message was generated automatically at their request; if you
believe that there is a problem with it please contact the archive
administrators by mailing ftpmas...@ftp-master.debian.org)
-----BEGIN PGP SIGNED MESSAGE-----
Hash: SHA256
Format: 1.8
Date: Sat, 12 Apr 2025 14:44:47 -0500
Source: rpy2
Architecture: source
Version: 3.5.17-2
Distribution: unstable
Urgency: medium
Maintainer: Dirk Eddelbuettel <e...@debian.org>
Changed-By: Dirk Eddelbuettel <e...@debian.org>
Closes: 1102774
Changes:
rpy2 (3.5.17-2) unstable; urgency=medium
.
* debian/control: Add libzstd-dev to Build-Depends (Closes: #1102774)
* debian/control: Set Build-Depends: to current R version
* debian/control: Set Standards-Version: to current version
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