Package: src:rpy2
Version: 3.5.17-1
Severity: serious
Tags: ftbfs trixie sid

Dear maintainer:

During a rebuild of all packages in unstable, your package failed to build:

--------------------------------------------------------------------------------
[...]
 debian/rules clean
dh clean --with python3 --buildsystem=pybuild
   debian/rules override_dh_auto_clean
make[1]: Entering directory '/<<PKGBUILDDIR>>'
echo "Skipping"
Skipping
make[1]: Leaving directory '/<<PKGBUILDDIR>>'
   dh_autoreconf_clean -O--buildsystem=pybuild
   debian/rules override_dh_clean
make[1]: Entering directory '/<<PKGBUILDDIR>>'
dh_clean
make[1]: Leaving directory '/<<PKGBUILDDIR>>'
 debian/rules binary
dh binary --with python3 --buildsystem=pybuild
   dh_update_autotools_config -O--buildsystem=pybuild
   dh_autoreconf -O--buildsystem=pybuild
   dh_auto_configure -O--buildsystem=pybuild
I: pybuild base:311: python3.13 setup.py config 
/usr/bin/ld: cannot find -lzstd: No such file or directory
collect2: error: ld returned 1 exit status
Traceback (most recent call last):
  File "/usr/lib/python3/dist-packages/setuptools/_distutils/spawn.py", line 
70, in spawn
    subprocess.check_call(cmd, env=_inject_macos_ver(env))
    ~~~~~~~~~~~~~~~~~~~~~^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
  File "/usr/lib/python3.13/subprocess.py", line 419, in check_call
    raise CalledProcessError(retcode, cmd)
subprocess.CalledProcessError: Command '['/usr/bin/x86_64-linux-gnu-gcc', 
'/tmp/tmp_pw_r_0gujo9hr/tmp/tmp_pw_r_0gujo9hr/test_pw_r.o', '-L/usr/lib/R/lib', 
'-lR', '-lpcre2-8', '-ldeflate', '-lzstd', '-llzma', '-lbz2', '-lz', '-ltirpc', 
'-lrt', '-ldl', '-lm', '-licuuc', '-licui18n', '-o', 
'/tmp/tmp_pw_r_0gujo9hr/test_pw_r']' returned non-zero exit status 1.

The above exception was the direct cause of the following exception:

Traceback (most recent call last):
  File "/usr/lib/python3/dist-packages/setuptools/_distutils/unixccompiler.py", 
line 287, in link
    self.spawn(linker + ld_args)
    ~~~~~~~~~~^^^^^^^^^^^^^^^^^^
  File "/usr/lib/python3/dist-packages/setuptools/_distutils/ccompiler.py", 
line 1052, in spawn
    spawn(cmd, dry_run=self.dry_run, **kwargs)
    ~~~~~^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
  File "/usr/lib/python3/dist-packages/setuptools/_distutils/spawn.py", line 
76, in spawn
    raise DistutilsExecError(
        f"command {_debug(cmd)!r} failed with exit code {err.returncode}"
    ) from err
distutils.errors.DistutilsExecError: command '/usr/bin/x86_64-linux-gnu-gcc' 
failed with exit code 1

During handling of the above exception, another exception occurred:

Traceback (most recent call last):
  File "/<<PKGBUILDDIR>>/setup.py", line 141, in <module>
    c_extension_status = get_r_c_extension_status(
        r_home,
        force_ok = os.environ.get('RPY2_API_FORCE') == 'True'
    )
  File "/<<PKGBUILDDIR>>/setup.py", line 121, in get_r_c_extension_status
    status = get_c_extension_status(libraries=c_ext.libraries,
                                    include_dirs=c_ext.include_dirs,
                                    library_dirs=c_ext.library_dirs)
  File "/<<PKGBUILDDIR>>/setup.py", line 82, in get_c_extension_status
    compiler.link_executable(
    ~~~~~~~~~~~~~~~~~~~~~~~~^
        compiler.compile([src_file], output_dir=tmp_dir,
        ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
    ...<2 lines>...
        libraries=libraries,
        ^^^^^^^^^^^^^^^^^^^^
        library_dirs=library_dirs)
        ^^^^^^^^^^^^^^^^^^^^^^^^^^
  File "/usr/lib/python3/dist-packages/setuptools/_distutils/ccompiler.py", 
line 788, in link_executable
    self.link(
    ~~~~~~~~~^
        CCompiler.EXECUTABLE,
        ^^^^^^^^^^^^^^^^^^^^^
    ...<11 lines>...
        target_lang,
        ^^^^^^^^^^^^
    )
    ^
  File "/usr/lib/python3/dist-packages/setuptools/_distutils/unixccompiler.py", 
line 289, in link
    raise LinkError(msg)
distutils.errors.LinkError: command '/usr/bin/x86_64-linux-gnu-gcc' failed with 
exit code 1
E: pybuild pybuild:389: configure: plugin distutils failed with: exit code=1: 
python3.13 setup.py config 
dh_auto_configure: error: pybuild --configure -i python{version} -p 3.13 
returned exit code 13
make: *** [debian/rules:19: binary] Error 25
dpkg-buildpackage: error: debian/rules binary subprocess returned exit status 2
--------------------------------------------------------------------------------

The above is just how the build ends and not necessarily the most relevant part.
If required, the full build log is available here:

https://people.debian.org/~sanvila/build-logs/202504/

About the archive rebuild: The build was made on virtual machines from AWS,
using sbuild and a reduced chroot with only build-essential packages.

If you could not reproduce the bug please contact me privately, as I
am willing to provide ssh access to a virtual machine where the bug is
fully reproducible.

If this is really a bug in one of the build-depends, please use
reassign and add an affects on src:rpy2, so that this is still
visible in the BTS web page for this package.

Thanks.

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