Your message dated Mon, 01 Mar 2021 19:49:16 +0000 with message-id <e1lgoxc-000eij...@fasolo.debian.org> and subject line Bug#983238: fixed in libbio-db-biofetch-perl 1.7.3-4 has caused the Debian Bug report #983238, regarding libbio-db-biofetch-perl: test failure if internet available to be marked as done.
This means that you claim that the problem has been dealt with. If this is not the case it is now your responsibility to reopen the Bug report if necessary, and/or fix the problem forthwith. (NB: If you are a system administrator and have no idea what this message is talking about, this may indicate a serious mail system misconfiguration somewhere. Please contact ow...@bugs.debian.org immediately.) -- 983238: https://bugs.debian.org/cgi-bin/bugreport.cgi?bug=983238 Debian Bug Tracking System Contact ow...@bugs.debian.org with problems
--- Begin Message ---Source: libbio-db-biofetch-perl Version: 1.7.3-3 Severity: serious Tags: ftbfs Justification: fails to build from source -----BEGIN PGP SIGNED MESSAGE----- Hash: SHA512 As seen on ci.debian.net: https://ci.debian.net/data/autopkgtest/testing/amd64/libb/libbio-db-biofetch-perl/10589851/log.gz the test suite can fail with: t/BioFetch.t .. ok 1 ok 2 ok 3 - An object of class 'Bio::Seq::RichSeq' isa 'Bio::SeqI' ok 4 ok 5 ok 6 - ------------- EXCEPTION ------------- MSG: BioFetch Error 12: No entries found. STACK Bio::DB::BioFetch::postprocess_data /usr/share/perl5/Bio/DB/BioFetch.pm:450 STACK Bio::DB::WebDBSeqI::_stream_request /usr/share/perl5/Bio/DB/WebDBSeqI.pm:769 STACK Bio::DB::WebDBSeqI::get_seq_stream /usr/share/perl5/Bio/DB/WebDBSeqI.pm:476 STACK Bio::DB::BioFetch::get_Stream_by_acc /usr/share/perl5/Bio/DB/BioFetch.pm:525 STACK Bio::DB::WebDBSeqI::get_Seq_by_acc /usr/share/perl5/Bio/DB/WebDBSeqI.pm:194 STACK toplevel t/BioFetch.t:32 - ------------------------------------- - ------------- EXCEPTION ------------- MSG: acc J02231 does not exist STACK Bio::DB::WebDBSeqI::get_Seq_by_acc /usr/share/perl5/Bio/DB/WebDBSeqI.pm:203 STACK toplevel t/BioFetch.t:32 - ------------------------------------- # Tests were run but no plan was declared and done_testing() was not seen. # Looks like your test exited with 255 just after 6. Dubious, test returned 255 (wstat 65280, 0xff00) All 6 subtests passed Test Summary Report - ------------------- t/BioFetch.t (Wstat: 65280 Tests: 6 Failed: 0) Non-zero exit status: 255 Parse errors: No plan found in TAP output Files=1, Tests=6, 2 wallclock secs ( 0.03 usr 0.00 sys + 0.21 cusr 0.03 csys = 0.27 CPU) Result: FAIL Trying locally, I get 1) no test failure during build, as my cowbuilder doesn't allow internet access, which is gracefully caught: t/BioFetch.t ............. skipped: no host: www.google.com All tests successful. 2) The same test failure during autopkgtests: t/BioFetch.t .. ok 1 ok 2 ok 3 - An object of class 'Bio::Seq::RichSeq' isa 'Bio::SeqI' ok 4 ok 5 ok 6 - ------------- EXCEPTION ------------- MSG: BioFetch Error 12: No entries found. STACK Bio::DB::BioFetch::postprocess_data /usr/share/perl5/Bio/DB/BioFetch.pm:450 STACK Bio::DB::WebDBSeqI::_stream_request /usr/share/perl5/Bio/DB/WebDBSeqI.pm:769 STACK Bio::DB::WebDBSeqI::get_seq_stream /usr/share/perl5/Bio/DB/WebDBSeqI.pm:476 STACK Bio::DB::BioFetch::get_Stream_by_acc /usr/share/perl5/Bio/DB/BioFetch.pm:525 STACK Bio::DB::WebDBSeqI::get_Seq_by_acc /usr/share/perl5/Bio/DB/WebDBSeqI.pm:194 STACK toplevel t/BioFetch.t:32 - ------------------------------------- - ------------- EXCEPTION ------------- MSG: acc J02231 does not exist STACK Bio::DB::WebDBSeqI::get_Seq_by_acc /usr/share/perl5/Bio/DB/WebDBSeqI.pm:203 STACK toplevel t/BioFetch.t:32 - ------------------------------------- # Tests were run but no plan was declared and done_testing() was not seen. # Looks like your test exited with 255 just after 6. Dubious, test returned 255 (wstat 65280, 0xff00) Cheers, gregor - -- System Information: Debian Release: bullseye/sid APT prefers unstable APT policy: (990, 'unstable'), (500, 'unstable-debug'), (500, 'oldoldstable'), (500, 'experimental'), (500, 'testing'), (500, 'stable'), (500, 'oldstable') Architecture: amd64 (x86_64) Foreign Architectures: i386 Kernel: Linux 5.10.0-3-amd64 (SMP w/4 CPU threads) Kernel taint flags: TAINT_OOT_MODULE, TAINT_UNSIGNED_MODULE Locale: LANG=C, LC_CTYPE=de_AT.utf8 (charmap=UTF-8), LANGUAGE not set Shell: /bin/sh linked to /bin/bash Init: sysvinit (via /sbin/init) LSM: AppArmor: enabled -----BEGIN PGP SIGNATURE----- iQKTBAEBCgB9FiEE0eExbpOnYKgQTYX6uzpoAYZJqgYFAmAyV/JfFIAAAAAALgAo aXNzdWVyLWZwckBub3RhdGlvbnMub3BlbnBncC5maWZ0aGhvcnNlbWFuLm5ldEQx RTEzMTZFOTNBNzYwQTgxMDREODVGQUJCM0E2ODAxODY0OUFBMDYACgkQuzpoAYZJ qgZRvQ/9HkQkcPQMcLkkQbTxEvybji3N98WcIheZ5d0IGPGtzdq/48SGG0bbQf0S 1+dPjVMTl/DO5iTtSSOgenPC+QTftOlw8mUoX13IV7RrPMGLtq4ukyE9c612gus7 1hkFsFAP65/+1SWRatb/jCkVasw/0c2n5rjE+LD/Rd11wFSdYuW8go1wgYFeQjWR W7n9oqeR4t1J7aT6XVkJNNFSl8mAe0B5eLinnglJ2mA/WWT4jDE27sac2msV+8WO URJYlQZtJpTPyM3WP0dlc3BJDYhcweY2flMzV4c6vvFpZAY38dbfUXlytCqkXby2 bcoeo0rO46KRmobE7hLFw0tudga467vMbkLWNYgrmIAR063FPpdZob85JQoqesBA 7ALrqwixezvMOHHE2rr7Boj1hdlKPAgg8c1zSZBod+NsMu3UZHKez34Cnh5ilgJP OvsCaEGMX/sOBxv3RXbzLyFgplqpkY2ErvgntXPZAh8esk76+og3B3o91v7nb23v Vt1wIr+ZyYmcTbHxW4lxoxAjbxbMgIG5tgnJsjBL1PaRTjAGWjtP00G2zoozGHFZ RNv5xCcIDduZsW4pK3TqoQHvsAzYVy5vhPnouIZwPNQaZ8G4Lr6NCw51J9b8r35h stBL4BZnJ/AJwTysSpBzkpUO7Ru9rArRjuf2LLquRwkZXXbRRPI= =3co6 -----END PGP SIGNATURE-----
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--- Begin Message ---Source: libbio-db-biofetch-perl Source-Version: 1.7.3-4 Done: Étienne Mollier <etienne.moll...@mailoo.org> We believe that the bug you reported is fixed in the latest version of libbio-db-biofetch-perl, which is due to be installed in the Debian FTP archive. A summary of the changes between this version and the previous one is attached. Thank you for reporting the bug, which will now be closed. If you have further comments please address them to 983...@bugs.debian.org, and the maintainer will reopen the bug report if appropriate. Debian distribution maintenance software pp. Étienne Mollier <etienne.moll...@mailoo.org> (supplier of updated libbio-db-biofetch-perl package) (This message was generated automatically at their request; if you believe that there is a problem with it please contact the archive administrators by mailing ftpmas...@ftp-master.debian.org) -----BEGIN PGP SIGNED MESSAGE----- Hash: SHA512 Format: 1.8 Date: Mon, 01 Mar 2021 19:42:54 +0100 Source: libbio-db-biofetch-perl Architecture: source Version: 1.7.3-4 Distribution: unstable Urgency: medium Maintainer: Debian Med Packaging Team <debian-med-packag...@lists.alioth.debian.org> Changed-By: Étienne Mollier <etienne.moll...@mailoo.org> Closes: 983238 Changes: libbio-db-biofetch-perl (1.7.3-4) unstable; urgency=medium . [ Andreas Tille ] * Team upload. * Package is maintained by Debian Med team. . [ Étienne Mollier ] * debian/rules: prevent tests to access the web. Closes: #983238 * prevent autodep8 perl test to access the web in order to avoid triggering transitions due to Internet issues, and mark the smoke test as superficial. Checksums-Sha1: 56b56fc474f16a8de7aedcd47a37652f6288c0a5 2315 libbio-db-biofetch-perl_1.7.3-4.dsc c67bf3df2de14a975441f59b9dc2e388e51c43a3 2500 libbio-db-biofetch-perl_1.7.3-4.debian.tar.xz d7f26c4265abc69d17af6aab5f871804963a5fc2 6486 libbio-db-biofetch-perl_1.7.3-4_amd64.buildinfo Checksums-Sha256: 6ce9cbbf78bc8a49dd3e902a79cb195e61cba9f575e240b8b07e2b29c206ea6a 2315 libbio-db-biofetch-perl_1.7.3-4.dsc 1dd2fb50abc19c32c65dfa87b2bb68037ac204b4a92313f45535e5e1b3a62b12 2500 libbio-db-biofetch-perl_1.7.3-4.debian.tar.xz 39d4272afb4ee56f0be727e196883beba7003eb098615d1b7971efd02e069910 6486 libbio-db-biofetch-perl_1.7.3-4_amd64.buildinfo Files: 15181899599f824368606bb7cef9f790 2315 perl optional libbio-db-biofetch-perl_1.7.3-4.dsc 7931a3947e520063932c232b565494b4 2500 perl optional libbio-db-biofetch-perl_1.7.3-4.debian.tar.xz bed8987bbc03580c392087d8e111d5fb 6486 perl optional libbio-db-biofetch-perl_1.7.3-4_amd64.buildinfo -----BEGIN PGP SIGNATURE----- iQIzBAEBCgAdFiEEj5GyJ8fW8rGUjII2eTz2fo8NEdoFAmA9NksACgkQeTz2fo8N EdplKBAAkQwwgjRfZWTOegvJBjdHRiQ2MAi5fyKFxuBrzuEsvu3TilEtK+MN4mdW 9qk5ZS2vRhqJd7XlXYTD8x4AhSfYSCDB9173VMgo7JJolYdTJ4J3AZuat9zYz5DL lYTKPr8srKvw4uDTbic7Z6f+7BWSh7PYzsi0T6lHcz7q46yTvkSEoSxh3RzoWADU ANTOmlKBdcbF34IVFYZYAS4ll/PSWzwPCX8oK+P+VEEX1VHIS339N+pYMJmpn9Xa sfezsWcpfsfv7+MmVNMLgHpfcgtbXPSCyoe/C83z3G0DbWoi1mRtnup4VIoe7Nw8 SaQw2IcT1VOm6FbyqVWoXOmPjeb3+1YhsXlT5SL+az2fvVxxnXB53bXO/GHS9HZr Ihv2rtvqhccqVRKn1BHGC1XfJURoFVXi9MJCBzQdL75uh98ZmSxnnXBP0lCEfG7A x7znUXzW/tG2CYAJp3/gmtRN3L1qUDU+GINxxLysCWbOdERn4yIRJBBp3WtYsWtb xpfVmOAXcR6AhVR9L1tPTSzBclKsRcHZ9WIDQGIqEXtvRjFZJrgqSCW36O4ci7fK uLcQTeb5jh44+ett+wsSBouIgW7iXRLEMRF2Q0stjDmASqBPk/u3hWlO+nYx8/Bi MaqfK+4UfNaU9RfmEB49P85npxt56GZ3YTQ4o+3JOHQFyp5MPX8= =aYWF -----END PGP SIGNATURE-----
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