Your message dated Mon, 22 Feb 2021 22:18:46 +0000 with message-id <e1lejxs-0003ac...@fasolo.debian.org> and subject line Bug#983238: fixed in libbio-db-ncbihelper-perl 1.7.6-3 has caused the Debian Bug report #983238, regarding libbio-db-biofetch-perl: test failure if internet available to be marked as done.
This means that you claim that the problem has been dealt with. If this is not the case it is now your responsibility to reopen the Bug report if necessary, and/or fix the problem forthwith. (NB: If you are a system administrator and have no idea what this message is talking about, this may indicate a serious mail system misconfiguration somewhere. Please contact ow...@bugs.debian.org immediately.) -- 983238: https://bugs.debian.org/cgi-bin/bugreport.cgi?bug=983238 Debian Bug Tracking System Contact ow...@bugs.debian.org with problems
--- Begin Message ---Source: libbio-db-biofetch-perl Version: 1.7.3-3 Severity: serious Tags: ftbfs Justification: fails to build from source -----BEGIN PGP SIGNED MESSAGE----- Hash: SHA512 As seen on ci.debian.net: https://ci.debian.net/data/autopkgtest/testing/amd64/libb/libbio-db-biofetch-perl/10589851/log.gz the test suite can fail with: t/BioFetch.t .. ok 1 ok 2 ok 3 - An object of class 'Bio::Seq::RichSeq' isa 'Bio::SeqI' ok 4 ok 5 ok 6 - ------------- EXCEPTION ------------- MSG: BioFetch Error 12: No entries found. STACK Bio::DB::BioFetch::postprocess_data /usr/share/perl5/Bio/DB/BioFetch.pm:450 STACK Bio::DB::WebDBSeqI::_stream_request /usr/share/perl5/Bio/DB/WebDBSeqI.pm:769 STACK Bio::DB::WebDBSeqI::get_seq_stream /usr/share/perl5/Bio/DB/WebDBSeqI.pm:476 STACK Bio::DB::BioFetch::get_Stream_by_acc /usr/share/perl5/Bio/DB/BioFetch.pm:525 STACK Bio::DB::WebDBSeqI::get_Seq_by_acc /usr/share/perl5/Bio/DB/WebDBSeqI.pm:194 STACK toplevel t/BioFetch.t:32 - ------------------------------------- - ------------- EXCEPTION ------------- MSG: acc J02231 does not exist STACK Bio::DB::WebDBSeqI::get_Seq_by_acc /usr/share/perl5/Bio/DB/WebDBSeqI.pm:203 STACK toplevel t/BioFetch.t:32 - ------------------------------------- # Tests were run but no plan was declared and done_testing() was not seen. # Looks like your test exited with 255 just after 6. Dubious, test returned 255 (wstat 65280, 0xff00) All 6 subtests passed Test Summary Report - ------------------- t/BioFetch.t (Wstat: 65280 Tests: 6 Failed: 0) Non-zero exit status: 255 Parse errors: No plan found in TAP output Files=1, Tests=6, 2 wallclock secs ( 0.03 usr 0.00 sys + 0.21 cusr 0.03 csys = 0.27 CPU) Result: FAIL Trying locally, I get 1) no test failure during build, as my cowbuilder doesn't allow internet access, which is gracefully caught: t/BioFetch.t ............. skipped: no host: www.google.com All tests successful. 2) The same test failure during autopkgtests: t/BioFetch.t .. ok 1 ok 2 ok 3 - An object of class 'Bio::Seq::RichSeq' isa 'Bio::SeqI' ok 4 ok 5 ok 6 - ------------- EXCEPTION ------------- MSG: BioFetch Error 12: No entries found. STACK Bio::DB::BioFetch::postprocess_data /usr/share/perl5/Bio/DB/BioFetch.pm:450 STACK Bio::DB::WebDBSeqI::_stream_request /usr/share/perl5/Bio/DB/WebDBSeqI.pm:769 STACK Bio::DB::WebDBSeqI::get_seq_stream /usr/share/perl5/Bio/DB/WebDBSeqI.pm:476 STACK Bio::DB::BioFetch::get_Stream_by_acc /usr/share/perl5/Bio/DB/BioFetch.pm:525 STACK Bio::DB::WebDBSeqI::get_Seq_by_acc /usr/share/perl5/Bio/DB/WebDBSeqI.pm:194 STACK toplevel t/BioFetch.t:32 - ------------------------------------- - ------------- EXCEPTION ------------- MSG: acc J02231 does not exist STACK Bio::DB::WebDBSeqI::get_Seq_by_acc /usr/share/perl5/Bio/DB/WebDBSeqI.pm:203 STACK toplevel t/BioFetch.t:32 - ------------------------------------- # Tests were run but no plan was declared and done_testing() was not seen. # Looks like your test exited with 255 just after 6. Dubious, test returned 255 (wstat 65280, 0xff00) Cheers, gregor - -- System Information: Debian Release: bullseye/sid APT prefers unstable APT policy: (990, 'unstable'), (500, 'unstable-debug'), (500, 'oldoldstable'), (500, 'experimental'), (500, 'testing'), (500, 'stable'), (500, 'oldstable') Architecture: amd64 (x86_64) Foreign Architectures: i386 Kernel: Linux 5.10.0-3-amd64 (SMP w/4 CPU threads) Kernel taint flags: TAINT_OOT_MODULE, TAINT_UNSIGNED_MODULE Locale: LANG=C, LC_CTYPE=de_AT.utf8 (charmap=UTF-8), LANGUAGE not set Shell: /bin/sh linked to /bin/bash Init: sysvinit (via /sbin/init) LSM: AppArmor: enabled -----BEGIN PGP SIGNATURE----- iQKTBAEBCgB9FiEE0eExbpOnYKgQTYX6uzpoAYZJqgYFAmAyV/JfFIAAAAAALgAo aXNzdWVyLWZwckBub3RhdGlvbnMub3BlbnBncC5maWZ0aGhvcnNlbWFuLm5ldEQx RTEzMTZFOTNBNzYwQTgxMDREODVGQUJCM0E2ODAxODY0OUFBMDYACgkQuzpoAYZJ qgZRvQ/9HkQkcPQMcLkkQbTxEvybji3N98WcIheZ5d0IGPGtzdq/48SGG0bbQf0S 1+dPjVMTl/DO5iTtSSOgenPC+QTftOlw8mUoX13IV7RrPMGLtq4ukyE9c612gus7 1hkFsFAP65/+1SWRatb/jCkVasw/0c2n5rjE+LD/Rd11wFSdYuW8go1wgYFeQjWR W7n9oqeR4t1J7aT6XVkJNNFSl8mAe0B5eLinnglJ2mA/WWT4jDE27sac2msV+8WO URJYlQZtJpTPyM3WP0dlc3BJDYhcweY2flMzV4c6vvFpZAY38dbfUXlytCqkXby2 bcoeo0rO46KRmobE7hLFw0tudga467vMbkLWNYgrmIAR063FPpdZob85JQoqesBA 7ALrqwixezvMOHHE2rr7Boj1hdlKPAgg8c1zSZBod+NsMu3UZHKez34Cnh5ilgJP OvsCaEGMX/sOBxv3RXbzLyFgplqpkY2ErvgntXPZAh8esk76+og3B3o91v7nb23v Vt1wIr+ZyYmcTbHxW4lxoxAjbxbMgIG5tgnJsjBL1PaRTjAGWjtP00G2zoozGHFZ RNv5xCcIDduZsW4pK3TqoQHvsAzYVy5vhPnouIZwPNQaZ8G4Lr6NCw51J9b8r35h stBL4BZnJ/AJwTysSpBzkpUO7Ru9rArRjuf2LLquRwkZXXbRRPI= =3co6 -----END PGP SIGNATURE-----
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--- Begin Message ---Source: libbio-db-ncbihelper-perl Source-Version: 1.7.6-3 Done: Étienne Mollier <etienne.moll...@mailoo.org> We believe that the bug you reported is fixed in the latest version of libbio-db-ncbihelper-perl, which is due to be installed in the Debian FTP archive. A summary of the changes between this version and the previous one is attached. Thank you for reporting the bug, which will now be closed. If you have further comments please address them to 983...@bugs.debian.org, and the maintainer will reopen the bug report if appropriate. Debian distribution maintenance software pp. Étienne Mollier <etienne.moll...@mailoo.org> (supplier of updated libbio-db-ncbihelper-perl package) (This message was generated automatically at their request; if you believe that there is a problem with it please contact the archive administrators by mailing ftpmas...@ftp-master.debian.org) -----BEGIN PGP SIGNED MESSAGE----- Hash: SHA512 Format: 1.8 Date: Mon, 22 Feb 2021 22:45:11 +0100 Source: libbio-db-ncbihelper-perl Architecture: source Version: 1.7.6-3 Distribution: unstable Urgency: medium Maintainer: Debian Med Packaging Team <debian-med-packag...@lists.alioth.debian.org> Changed-By: Étienne Mollier <etienne.moll...@mailoo.org> Closes: 983238 Changes: libbio-db-ncbihelper-perl (1.7.6-3) unstable; urgency=medium . * Team upload. * Prevent build time tests and autodep8-perl test to fetch resources on the Internet. Closes: #983238 * Ensured autopkgtest remained offline, and marked the smoke test as superficial, since all tests within are skipped without Internet access. * Side-tracked maintainer notifications from debian-...@lists.debian.org to debian-med-packag...@lists.alioth.debian.org like the other packages. Checksums-Sha1: 931c3518ef0009e78e97531546d10854cb855ceb 2447 libbio-db-ncbihelper-perl_1.7.6-3.dsc d04ce1b0f60909809b842d7baf0b81f737206042 2936 libbio-db-ncbihelper-perl_1.7.6-3.debian.tar.xz be45e7ab10f2e74b12e821c6817aa206f11dfd28 7224 libbio-db-ncbihelper-perl_1.7.6-3_amd64.buildinfo Checksums-Sha256: c4b234241017ad6318031e2ba1a6384eff8f7633189cff7a7dabe65f7c08805f 2447 libbio-db-ncbihelper-perl_1.7.6-3.dsc 8cb71b96d2329d2869099b5a1b1351ef6e848cf2e401a6a858b908b7e83ffb4a 2936 libbio-db-ncbihelper-perl_1.7.6-3.debian.tar.xz d0aa0f207e5ece53570dc28d27db80afa162c574ee0668046717bf04d7d2a9da 7224 libbio-db-ncbihelper-perl_1.7.6-3_amd64.buildinfo Files: f0eef0262c0f7c7e3d1ddbe5d91a1ab2 2447 perl optional libbio-db-ncbihelper-perl_1.7.6-3.dsc 7cff688975eafcd73ace832c0da45150 2936 perl optional libbio-db-ncbihelper-perl_1.7.6-3.debian.tar.xz 5455f131fe3024b1c53261fe044bd445 7224 perl optional libbio-db-ncbihelper-perl_1.7.6-3_amd64.buildinfo -----BEGIN PGP SIGNATURE----- iQIzBAEBCgAdFiEEj5GyJ8fW8rGUjII2eTz2fo8NEdoFAmA0KBUACgkQeTz2fo8N EdoqJw/+Pu3ThfdZtuAuMbsteA8M7SUMkZz2iYUF2zGVUebuxQOrcN47sqo3NS/S O7sUPd0OcxrzKNnou4ZrSPTdKxuZFy05b2dra2Vs0zk5/TSEWoi5+NeoVL2tEC2G oQWMEb1DykRmGkHl6Z/2yiMZV/L6NTbPOHglQHrDijjENZTxP2E8swNu2vPDvqfu anW0tAkevSFVi++q2Za9amUhbMrXF5Mr6bMasiCGYwInPXThhDRcedqWje7eJg+y 8YYCSmKvsCOcruirYQPxbvSTJeRQCvO3yQMgPD1fHnOpyLbzRUWi7p046QQkr0mg OB3BhCwARK2hCIk5X43ug4pCBhOOE4a/Ognh8nYs/3GWPb2XxjRfV2ixroc9//s4 8Bhlt8c/UVjGmnAri8BY+zHO2Tq3Ig7P2TuGbc6LUQYdGZ/J1Hbr8JXR1xqSlrhs usXp8dVWqqb0D6mqSuXHQhVAn+FE9ZiupUpcr80g4x5V4ErTpXQcgg49N9fTrque lo3ri3w5rmG30Te5dMyTzmICL2FmPVomaGa1BW4VERAhxcV5LXSNSnWxtXejk+0F U/o+fibpgFCr6M/U+uqQXzL/tK5J4Owz1nlLME4IjyfMq01shzEm5OpDfQ5pOHHg Jf/EAl9+dvmpGEBcdz4W8rURS+ZbVDFEE2/5cs8Y4rAQRH1Zzwg= =Ttgq -----END PGP SIGNATURE-----
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