Source: libbio-db-biofetch-perl Version: 1.7.3-3 Severity: serious Tags: ftbfs Justification: fails to build from source
-----BEGIN PGP SIGNED MESSAGE----- Hash: SHA512 As seen on ci.debian.net: https://ci.debian.net/data/autopkgtest/testing/amd64/libb/libbio-db-biofetch-perl/10589851/log.gz the test suite can fail with: t/BioFetch.t .. ok 1 ok 2 ok 3 - An object of class 'Bio::Seq::RichSeq' isa 'Bio::SeqI' ok 4 ok 5 ok 6 - ------------- EXCEPTION ------------- MSG: BioFetch Error 12: No entries found. STACK Bio::DB::BioFetch::postprocess_data /usr/share/perl5/Bio/DB/BioFetch.pm:450 STACK Bio::DB::WebDBSeqI::_stream_request /usr/share/perl5/Bio/DB/WebDBSeqI.pm:769 STACK Bio::DB::WebDBSeqI::get_seq_stream /usr/share/perl5/Bio/DB/WebDBSeqI.pm:476 STACK Bio::DB::BioFetch::get_Stream_by_acc /usr/share/perl5/Bio/DB/BioFetch.pm:525 STACK Bio::DB::WebDBSeqI::get_Seq_by_acc /usr/share/perl5/Bio/DB/WebDBSeqI.pm:194 STACK toplevel t/BioFetch.t:32 - ------------------------------------- - ------------- EXCEPTION ------------- MSG: acc J02231 does not exist STACK Bio::DB::WebDBSeqI::get_Seq_by_acc /usr/share/perl5/Bio/DB/WebDBSeqI.pm:203 STACK toplevel t/BioFetch.t:32 - ------------------------------------- # Tests were run but no plan was declared and done_testing() was not seen. # Looks like your test exited with 255 just after 6. Dubious, test returned 255 (wstat 65280, 0xff00) All 6 subtests passed Test Summary Report - ------------------- t/BioFetch.t (Wstat: 65280 Tests: 6 Failed: 0) Non-zero exit status: 255 Parse errors: No plan found in TAP output Files=1, Tests=6, 2 wallclock secs ( 0.03 usr 0.00 sys + 0.21 cusr 0.03 csys = 0.27 CPU) Result: FAIL Trying locally, I get 1) no test failure during build, as my cowbuilder doesn't allow internet access, which is gracefully caught: t/BioFetch.t ............. skipped: no host: www.google.com All tests successful. 2) The same test failure during autopkgtests: t/BioFetch.t .. ok 1 ok 2 ok 3 - An object of class 'Bio::Seq::RichSeq' isa 'Bio::SeqI' ok 4 ok 5 ok 6 - ------------- EXCEPTION ------------- MSG: BioFetch Error 12: No entries found. STACK Bio::DB::BioFetch::postprocess_data /usr/share/perl5/Bio/DB/BioFetch.pm:450 STACK Bio::DB::WebDBSeqI::_stream_request /usr/share/perl5/Bio/DB/WebDBSeqI.pm:769 STACK Bio::DB::WebDBSeqI::get_seq_stream /usr/share/perl5/Bio/DB/WebDBSeqI.pm:476 STACK Bio::DB::BioFetch::get_Stream_by_acc /usr/share/perl5/Bio/DB/BioFetch.pm:525 STACK Bio::DB::WebDBSeqI::get_Seq_by_acc /usr/share/perl5/Bio/DB/WebDBSeqI.pm:194 STACK toplevel t/BioFetch.t:32 - ------------------------------------- - ------------- EXCEPTION ------------- MSG: acc J02231 does not exist STACK Bio::DB::WebDBSeqI::get_Seq_by_acc /usr/share/perl5/Bio/DB/WebDBSeqI.pm:203 STACK toplevel t/BioFetch.t:32 - ------------------------------------- # Tests were run but no plan was declared and done_testing() was not seen. # Looks like your test exited with 255 just after 6. Dubious, test returned 255 (wstat 65280, 0xff00) Cheers, gregor - -- System Information: Debian Release: bullseye/sid APT prefers unstable APT policy: (990, 'unstable'), (500, 'unstable-debug'), (500, 'oldoldstable'), (500, 'experimental'), (500, 'testing'), (500, 'stable'), (500, 'oldstable') Architecture: amd64 (x86_64) Foreign Architectures: i386 Kernel: Linux 5.10.0-3-amd64 (SMP w/4 CPU threads) Kernel taint flags: TAINT_OOT_MODULE, TAINT_UNSIGNED_MODULE Locale: LANG=C, LC_CTYPE=de_AT.utf8 (charmap=UTF-8), LANGUAGE not set Shell: /bin/sh linked to /bin/bash Init: sysvinit (via /sbin/init) LSM: AppArmor: enabled -----BEGIN PGP SIGNATURE----- iQKTBAEBCgB9FiEE0eExbpOnYKgQTYX6uzpoAYZJqgYFAmAyV/JfFIAAAAAALgAo aXNzdWVyLWZwckBub3RhdGlvbnMub3BlbnBncC5maWZ0aGhvcnNlbWFuLm5ldEQx RTEzMTZFOTNBNzYwQTgxMDREODVGQUJCM0E2ODAxODY0OUFBMDYACgkQuzpoAYZJ qgZRvQ/9HkQkcPQMcLkkQbTxEvybji3N98WcIheZ5d0IGPGtzdq/48SGG0bbQf0S 1+dPjVMTl/DO5iTtSSOgenPC+QTftOlw8mUoX13IV7RrPMGLtq4ukyE9c612gus7 1hkFsFAP65/+1SWRatb/jCkVasw/0c2n5rjE+LD/Rd11wFSdYuW8go1wgYFeQjWR W7n9oqeR4t1J7aT6XVkJNNFSl8mAe0B5eLinnglJ2mA/WWT4jDE27sac2msV+8WO URJYlQZtJpTPyM3WP0dlc3BJDYhcweY2flMzV4c6vvFpZAY38dbfUXlytCqkXby2 bcoeo0rO46KRmobE7hLFw0tudga467vMbkLWNYgrmIAR063FPpdZob85JQoqesBA 7ALrqwixezvMOHHE2rr7Boj1hdlKPAgg8c1zSZBod+NsMu3UZHKez34Cnh5ilgJP OvsCaEGMX/sOBxv3RXbzLyFgplqpkY2ErvgntXPZAh8esk76+og3B3o91v7nb23v Vt1wIr+ZyYmcTbHxW4lxoxAjbxbMgIG5tgnJsjBL1PaRTjAGWjtP00G2zoozGHFZ RNv5xCcIDduZsW4pK3TqoQHvsAzYVy5vhPnouIZwPNQaZ8G4Lr6NCw51J9b8r35h stBL4BZnJ/AJwTysSpBzkpUO7Ru9rArRjuf2LLquRwkZXXbRRPI= =3co6 -----END PGP SIGNATURE-----
