Could you check that your picard-Tools package is correctly patched:

--- a/build.xml
+++ b/build.xml
@@ -23,7 +23,7 @@
   ~ THE SOFTWARE.
   -->

-<project name="picard-public" basedir="." default="all">
+<project name="picard-public" basedir="." default="jar">

     <property name="src" value="src/java"/>
     <property name="src.scripts" value="src/scripts"/>
@@ -63,6 +63,9 @@
             <fileset dir="${lib}">
                 <include name="**/*.jar"/>
             </fileset>
+            <pathelement path="/usr/share/java/testng.jar"/>
+            <pathelement path="/usr/share/java/snappy1.0.3-java.jar"/>
+            <pathelement path="/usr/share/java/jbzip2.jar"/>
         </path>

and that file /usr/share/java/snappy1.0.3-java.jar (symlink to maven-repo)
 is present with original libsnappy package ?

After my tests, everything looks fine on Debian side.

Thanks

Olivier

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