On Wed, 14 Apr 2010, Soeren Sonnenburg wrote:
> > > one basically would need to build libshogun{,ui} first and then using
> > > this libshogun{,ui} build the other interfaces with various settings.
> > > quite a bit of effort I currently don't have time for...
> there is more needed for this, I tried to add the correct SO prefix for
> python debug in shogun-trunk.
d'oh -- I've missed that one among the config variables in the
dictionary. good catch
> could you please give it a try and tell me
> if python-dbg works with shogun in this case?
not yet (does it work for you ?), I am running in my regular dirty
environment:
,---
| ./configure --prefix=$PWD/../install-dbg --enable-hmm-parallel
--python=python2.5-dbg --interfaces=libshogun,python_modular
|
| and it fails with
|
| Checking for Python/Python Numpy Developer Files ... no
|
| Error: python/numpy developer files missing
|
| Check configure.log if you do not understand why it failed.
| The last 20 lines of configure.log are shown below
|
| dims[0]=10;
| Py_Initialize();
| PyObject* outArray = PyArray_SimpleNewFromData(1, dims, NPY_DOUBLE,
(void*)array);
| }
|
| PyMODINIT_FUNC initsg(void);
|
| cc -I. -I.. -fPIC -g -Wall -O9 -fexpensive-optimizations
-frerun-cse-after-loop -fcse-follow-jumps -finline-functions -fschedule-insns2
-fthread-jumps -fforce-addr -fstrength-reduce -funroll-loops -march=native
-mtune=native -pthread ./configure-23827-8140.c -o ./configure-17751-8140.o
-Xlinker --no-undefined -lm -pthread -llapack -lcblas -llapack_atlas -lglpk -lm
-llzo2 -lz -lbz2 -llzma -fno-strict-aliasing -fPIC -I/usr/include/python2.5_d
-I/usr/lib/python2.5/site-packages/numpy/core/include -lutil -ldl -shared
-L/usr/lib/python2.5/config_d -lpython2.5
| ./configure-23827-8140.c: In function ‘initsg’:
| ./configure-23827-8140.c:11: warning: unused variable ‘outArray’
| ./configure-23827-8140.c: At top level:
| /usr/include/python2.5_d/numpy/__multiarray_api.h:968: warning:
‘_import_array’ defined but not used
| /usr/bin/ld: /usr/lib/python2.5/config_d/libpython2.5.a(pythonrun.o):
relocation R_X86_64_32 against `.rodata' can not be used when making a shared
object; recompile with -fPIC
| /usr/lib/python2.5/config_d/libpython2.5.a: could not read symbols: Bad value
| collect2: ld returned 1 exit status
| no object file created
|
| Result is: no
`---
-- that config_d insertion (within _pylibpath) seems the one to blame, so
revert to become 'for win32' only if it helps there ;)
BTW... question from an ignorant bastard (ie me):
why -O2 is used for COMP_NOOPTS, -O2 is quite a bit of optimization
already, so it seems not to match the 'NOOPTS' ;)
ideally it would be best to have debug libraries with -O0 BUT I couldn't
actually "configure" with -O0, the problem seems to reside in python-dbg
dynamic library which lacks some symbols (probably not present while building
with -O2 of python-dbg package), and only static one having them...
here is what I am talking about (the only thing different is the -O)
,--
| $> cc -I. -I.. -fPIC -g -Wall -O2 -pthread ./configure-9068-28990.c -o
./configure-10394-28990.o -Xlinker --no-undefined -lm -pthread -llapack -lcblas
-llapack_atlas -lglpk -lm -llzo2 -lz -lbz2 -llzma -fno-strict-aliasing -fPIC
-I/usr/include/python2.5_d
-I/usr/lib/python2.5/site-packages/numpy/core/include -lutil -ldl -shared
-lpython2.5
| ./configure-9068-28990.c: In function ‘initsg’:
| ./configure-9068-28990.c:50: warning: unused variable ‘outArray’
| ./configure-9068-28990.c: At top level:
| /usr/include/python2.5_d/numpy/__multiarray_api.h:968: warning:
‘_import_array’ defined but not used
|
| $> cc -I. -I.. -fPIC -g -Wall -O0 -pthread ./configure-9068-28990.c -o
./configure-10394-28990.o -Xlinker --no-undefined -lm -pthread -llapack -lcblas
-llapack_atlas -lglpk -lm -llzo2 -lz -lbz2 -llzma -fno-strict-aliasing -fPIC
-I/usr/include/python2.5_d
-I/usr/lib/python2.5/site-packages/numpy/core/include -lutil -ldl -shared
-lpython2.5
| ./configure-9068-28990.c: In function ‘initsg’:
| ./configure-9068-28990.c:50: warning: unused variable ‘outArray’
| ./configure-9068-28990.c: At top level:
| /usr/include/python2.5_d/numpy/__multiarray_api.h:968: warning:
‘_import_array’ defined but not used
| /home/yoh/.tmp/ccSljF5u.o: In function `_import_array':
| /usr/include/python2.5_d/numpy/__multiarray_api.h:975: undefined reference to
`_Py_RefTotal'
| /usr/include/python2.5_d/numpy/__multiarray_api.h:975: undefined reference to
`_Py_RefTotal'
| /usr/include/python2.5_d/numpy/__multiarray_api.h:975: undefined reference to
`_Py_NegativeRefcount'
| /usr/include/python2.5_d/numpy/__multiarray_api.h:975: undefined reference to
`_Py_Dealloc'
| /usr/include/python2.5_d/numpy/__multiarray_api.h:979: undefined reference to
`_Py_RefTotal'
| /usr/include/python2.5_d/numpy/__multiarray_api.h:979: undefined reference to
`_Py_RefTotal'
| /usr/include/python2.5_d/numpy/__multiarray_api.h:979: undefined reference to
`_Py_NegativeRefcount'
| /usr/include/python2.5_d/numpy/__multiarray_api.h:979: undefined reference to
`_Py_Dealloc'
| /usr/include/python2.5_d/numpy/__multiarray_api.h:980: undefined reference to
`_Py_RefTotal'
| /usr/include/python2.5_d/numpy/__multiarray_api.h:980: undefined reference to
`_Py_RefTotal'
| /usr/include/python2.5_d/numpy/__multiarray_api.h:980: undefined reference to
`_Py_NegativeRefcount'
| /usr/include/python2.5_d/numpy/__multiarray_api.h:980: undefined reference to
`_Py_Dealloc
`---
--
.-.
=------------------------------ /v\ ----------------------------=
Keep in touch // \\ (yoh@|www.)onerussian.com
Yaroslav Halchenko /( )\ ICQ#: 60653192
Linux User ^^-^^ [175555]
--
To UNSUBSCRIBE, email to debian-bugs-dist-requ...@lists.debian.org
with a subject of "unsubscribe". Trouble? Contact listmas...@lists.debian.org
