Hi Pantelis, Development are looking into this error as it even occurs running against an empty database with the latest develop/7 build …
Best Regards Hugh Williams Professional Services OpenLink Software, Inc. // http://www.openlinksw.com/ <http://www.openlinksw.com/> Weblog -- http://www.openlinksw.com/blogs/ <http://www.openlinksw.com/blogs/> LinkedIn -- http://www.linkedin.com/company/openlink-software/ <http://www.linkedin.com/company/openlink-software/> Twitter -- http://twitter.com/OpenLink <http://twitter.com/OpenLink> Google+ -- http://plus.google.com/100570109519069333827/ <http://plus.google.com/100570109519069333827/> Facebook -- http://www.facebook.com/OpenLinkSoftware <http://www.facebook.com/OpenLinkSoftware> Universal Data Access, Integration, and Management Technology Providers > On 17 Feb 2016, at 10:21, Lorenz Bühmann <buehm...@informatik.uni-leipzig.de > <mailto:buehm...@informatik.uni-leipzig.de>> wrote: > > Hello Pantelis, > > it looks like a bug of course. The question is which Virtuoso version Bio2RDF > is currently using. Might be that the bug is fixed in latest versions, but if > you're not the maintainer of Bio2RDF it seems to be impossible to fix it. > Might be that there is a workaround, but that's what the developers should > know. > > Kind regards, > Lorenz > >> No feedback? >> >> Nobody has seen "Virtuoso 37000 Error SQ156: Internal Optimized compiler >> error : supposed to have ose in bracket outer in rdfinf.c:2636." in the past? >> >> Kind regards, >> Pantelis Natsiavas >> >> >> 2016-02-13 14:40 GMT+02:00 Lorenz Bühmann >> <buehm...@informatik.uni-leipzig.de >> <mailto:buehm...@informatik.uni-leipzig.de>>: >> Why do you ask this as a response to a totally different question? And >> what's the relationship to Virtuoso? I think this questions is better for >> something like answer.semanticweb.com <http://answer.semanticweb.com/> or >> stackoverflow. >> >> By the way, I do not understand the question: What do you mean by "I want to >> link to find a dataset"? >> >> Lorenz >> >>> Hi every body >>> I am trying to use bio2rdf, but i want to link to find a dataset. >>> This link http://bio2rdf.org/bio2rdf.dataset_vocabulary >>> <http://bio2rdf.org/bio2rdf.dataset_vocabulary> give me an error. >>> >>> any suggestion of other link could be helpfull. >>> Kind regards >>> Fatma >>> >>> 2016-02-12 14:55 GMT+01:00 Pantelis Natsiavas < >>> <mailto:natsia...@gmail.com>natsia...@gmail.com >>> <mailto:natsia...@gmail.com>>: >>> Hi everybody. >>> >>> I am trying to execute the query >>> >>> PREFIX void: < <http://rdfs.org/ns/void#>http://rdfs.org/ns/void# >>> <http://rdfs.org/ns/void#>> >>> PREFIX dv: <http://bio2rdf.org/bio2rdf.dataset_vocabulary >>> <http://bio2rdf.org/bio2rdf.dataset_vocabulary>:> >>> PREFIX dcterms: < <http://purl.org/dc/terms/>http://purl.org/dc/terms/ >>> <http://purl.org/dc/terms/>> >>> PREFIX drugbank: < >>> <http://bio2rdf.org/drugbank_vocabulary>http://bio2rdf.org/drugbank_vocabulary >>> <http://bio2rdf.org/drugbank_vocabulary>:> >>> PREFIX rdf: <http://www.w3.org/1999/02/22-rdf-syntax-ns# >>> <http://www.w3.org/1999/02/22-rdf-syntax-ns#>> >>> >>> SELECT ?drug >>> ?drugTitle >>> ?brandTitle >>> WHERE { >>> ?drug a drugbank:Drug . >>> OPTIONAL { ?drug dcterms:title ?drugTitle . >>> ?drugTitle bif:contains "'Ibuprofen'"} . >>> OPTIONAL { ?drug drugbank:brand ?brand . >>> ?brand bif:contains "'Ibuprofen'"} . >>> OPTIONAL { ?brand dcterms:title ?brandTitle . >>> ?brandTitle bif:contains "'Ibuprofen'"} . >>> } >>> >>> which uses bif:contains inside optionals. >>> >>> I get the error: >>> >>> Virtuoso 37000 Error SQ156: Internal Optimized compiler error : supposed to >>> have ose in bracket outer in rdfinf.c:2636. >>> Please report the statement compiled. >>> >>> SPARQL query: >>> >>> #output-format:text/html >>> PREFIX void: >>> PREFIX dv: >>> PREFIX dcterms: >>> PREFIX drugbank: >>> PREFIX rdf: >>> >>> SELECT ?drug >>> ?drugTitle >>> ?brandTitle >>> WHERE { >>> ?drug a drugbank:Drug . >>> OPTIONAL { ?drug dcterms:title ?drugTitle . >>> ?drugTitle bif:contains "'Ibuprofen'"} . >>> OPTIONAL { ?drug drugbank:brand ?brand . >>> ?brand bif:contains "'Ibuprofen'"} . >>> OPTIONAL { ?brand dcterms:title ?brandTitle . >>> ?brandTitle bif:contains "'Ibuprofen'"} . >>> } >>> Is this an invalid query? I tried the same query with only the first >>> optional clause in place and I don't get the error, but I don't get any >>> results either. It seems it takes too long to execute (more than 10 >>> minutes). >>> >>> Could you please point me on how I could use such a restriction with >>> multiple optional clauses in a performance suitable manner? >>> >>> Kind regards, >>> Pantelis Natsiavas >>> >>> ------------------------------------------------------------------------------ >>> Site24x7 APM Insight: Get Deep Visibility into Application Performance >>> APM + Mobile APM + RUM: Monitor 3 App instances at just $35/Month >>> Monitor end-to-end web transactions and take corrective actions now >>> Troubleshoot faster and improve end-user experience. Signup Now! >>> http://pubads.g.doubleclick.net/gampad/clk?id=272487151&iu=/4140 >>> <http://pubads.g.doubleclick.net/gampad/clk?id=272487151&iu=/4140> >>> _______________________________________________ >>> Virtuoso-users mailing list >>> Virtuoso-users@lists.sourceforge.net >>> <mailto:Virtuoso-users@lists.sourceforge.net> >>> https://lists.sourceforge.net/lists/listinfo/virtuoso-users >>> <https://lists.sourceforge.net/lists/listinfo/virtuoso-users> >>> >>> >>> >>> >>> ------------------------------------------------------------------------------ >>> Site24x7 APM Insight: Get Deep Visibility into Application Performance >>> APM + Mobile APM + RUM: Monitor 3 App instances at just $35/Month >>> Monitor end-to-end web transactions and take corrective actions now >>> Troubleshoot faster and improve end-user experience. Signup Now! >>> http://pubads.g.doubleclick.net/gampad/clk?id=272487151&iu=/4140 >>> <http://pubads.g.doubleclick.net/gampad/clk?id=272487151&iu=/4140> >>> >>> _______________________________________________ >>> Virtuoso-users mailing list >>> Virtuoso-users@lists.sourceforge.net >>> <mailto:Virtuoso-users@lists.sourceforge.net> >>> https://lists.sourceforge.net/lists/listinfo/virtuoso-users >>> <https://lists.sourceforge.net/lists/listinfo/virtuoso-users> >> -- >> Lorenz Bühmann >> AKSW group, University of Leipzig >> Group: http://aksw.org <http://aksw.org/> - semantic web research center >> >> ------------------------------------------------------------------------------ >> Site24x7 APM Insight: Get Deep Visibility into Application Performance >> APM + Mobile APM + RUM: Monitor 3 App instances at just $35/Month >> Monitor end-to-end web transactions and take corrective actions now >> Troubleshoot faster and improve end-user experience. Signup Now! >> http://pubads.g.doubleclick.net/gampad/clk?id=272487151&iu=/4140 >> <http://pubads.g.doubleclick.net/gampad/clk?id=272487151&iu=/4140> >> _______________________________________________ >> Virtuoso-users mailing list >> Virtuoso-users@lists.sourceforge.net >> <mailto:Virtuoso-users@lists.sourceforge.net> >> https://lists.sourceforge.net/lists/listinfo/virtuoso-users >> <https://lists.sourceforge.net/lists/listinfo/virtuoso-users> >> >> >> >> >> ------------------------------------------------------------------------------ >> Site24x7 APM Insight: Get Deep Visibility into Application Performance >> APM + Mobile APM + RUM: Monitor 3 App instances at just $35/Month >> Monitor end-to-end web transactions and take corrective actions now >> Troubleshoot faster and improve end-user experience. Signup Now! >> http://pubads.g.doubleclick.net/gampad/clk?id=272487151&iu=/4140 >> <http://pubads.g.doubleclick.net/gampad/clk?id=272487151&iu=/4140> >> >> _______________________________________________ >> Virtuoso-users mailing list >> Virtuoso-users@lists.sourceforge.net >> <mailto:Virtuoso-users@lists.sourceforge.net> >> https://lists.sourceforge.net/lists/listinfo/virtuoso-users >> <https://lists.sourceforge.net/lists/listinfo/virtuoso-users> > -- > Lorenz Bühmann > AKSW group, University of Leipzig > Group: http://aksw.org <http://aksw.org/> - semantic web research center > ------------------------------------------------------------------------------ > Site24x7 APM Insight: Get Deep Visibility into Application Performance > APM + Mobile APM + RUM: Monitor 3 App instances at just $35/Month > Monitor end-to-end web transactions and take corrective actions now > Troubleshoot faster and improve end-user experience. Signup Now! > http://pubads.g.doubleclick.net/gampad/clk?id=272487151&iu=/4140_______________________________________________ > > <http://pubads.g.doubleclick.net/gampad/clk?id=272487151&iu=/4140_______________________________________________> > Virtuoso-users mailing list > Virtuoso-users@lists.sourceforge.net > https://lists.sourceforge.net/lists/listinfo/virtuoso-users
smime.p7s
Description: S/MIME cryptographic signature
------------------------------------------------------------------------------ Site24x7 APM Insight: Get Deep Visibility into Application Performance APM + Mobile APM + RUM: Monitor 3 App instances at just $35/Month Monitor end-to-end web transactions and take corrective actions now Troubleshoot faster and improve end-user experience. Signup Now! http://pubads.g.doubleclick.net/gampad/clk?id=272487151&iu=/4140
_______________________________________________ Virtuoso-users mailing list Virtuoso-users@lists.sourceforge.net https://lists.sourceforge.net/lists/listinfo/virtuoso-users
