No feedback?
Nobody has seen "Virtuoso 37000 Error SQ156: Internal Optimized compiler
error : supposed to have ose in bracket outer in rdfinf.c:2636." in the
past?
Kind regards,
Pantelis Natsiavas
2016-02-13 14:40 GMT+02:00 Lorenz Bühmann <
buehm...@informatik.uni-leipzig.de>:
> Why do you ask this as a response to a totally different question? And
> what's the relationship to Virtuoso? I think this questions is better for
> something like answer.semanticweb.com or stackoverflow.
>
> By the way, I do not understand the question: What do you mean by "I want
> to link to find a dataset"?
>
> Lorenz
>
> Hi every body
> I am trying to use bio2rdf, but i want to link to find a dataset.
> This link http://bio2rdf.org/bio2rdf.dataset_vocabulary give me an error.
>
> any suggestion of other link could be helpfull.
> Kind regards
> Fatma
>
> 2016-02-12 14:55 GMT+01:00 Pantelis Natsiavas <natsia...@gmail.com>:
>
>> Hi everybody.
>>
>> I am trying to execute the query
>>
>> PREFIX void: <http://rdfs.org/ns/void#>
>> PREFIX dv: <http://bio2rdf.org/bio2rdf.dataset_vocabulary:>
>> PREFIX dcterms: <http://purl.org/dc/terms/>
>> PREFIX drugbank: <http://bio2rdf.org/drugbank_vocabulary:>
>> PREFIX rdf: <http://www.w3.org/1999/02/22-rdf-syntax-ns#>
>>
>> SELECT ?drug
>> ?drugTitle
>> ?brandTitle
>> WHERE {
>> ?drug a drugbank:Drug .
>> OPTIONAL { ?drug dcterms:title ?drugTitle .
>> ?drugTitle bif:contains "'Ibuprofen'"} .
>> OPTIONAL { ?drug drugbank:brand ?brand .
>> ?brand bif:contains "'Ibuprofen'"} .
>> OPTIONAL { ?brand dcterms:title ?brandTitle .
>> ?brandTitle bif:contains "'Ibuprofen'"} .
>> }
>>
>> which uses bif:contains inside optionals.
>>
>> I get the error:
>>
>> Virtuoso 37000 Error SQ156: Internal Optimized compiler error : supposed to
>> have ose in bracket outer in rdfinf.c:2636.
>> Please report the statement compiled.
>>
>> SPARQL query:
>>
>> #output-format:text/html
>> PREFIX void:
>> PREFIX dv:
>> PREFIX dcterms:
>> PREFIX drugbank:
>> PREFIX rdf:
>>
>> SELECT ?drug
>> ?drugTitle
>> ?brandTitle
>> WHERE {
>> ?drug a drugbank:Drug .
>> OPTIONAL { ?drug dcterms:title ?drugTitle .
>> ?drugTitle bif:contains "'Ibuprofen'"} .
>> OPTIONAL { ?drug drugbank:brand ?brand .
>> ?brand bif:contains "'Ibuprofen'"} .
>> OPTIONAL { ?brand dcterms:title ?brandTitle .
>> ?brandTitle bif:contains "'Ibuprofen'"} .
>> }
>>
>> Is this an invalid query? I tried the same query with only the first
>> optional clause in place and I don't get the error, but I don't get any
>> results either. It seems it takes too long to execute (more than 10
>> minutes).
>>
>> Could you please point me on how I could use such a restriction with
>> multiple optional clauses in a performance suitable manner?
>>
>> Kind regards,
>> Pantelis Natsiavas
>>
>>
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>>
>
>
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>
> --
> Lorenz Bühmann
> AKSW group, University of Leipzig
> Group: http://aksw.org - semantic web research center
>
>
>
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