Hi, I rewrote the FED following your guidance, and now, interestingly, the same FED works send it from your URI Burner but does not work from our SPARQL endpoint. I am not capable of seeing where is my mistake. I notice that when i clear the SERVICE part out from the query all works perfectly well, but i copied this part from the query that works (the query sent from the URI Burner) and the 'Content encoding error' come up..
URI Burner, query: http://linkeddata.uriburner.com/c/9D7UQSYP result: http://linkeddata.uriburner.com/c/9CVX4S37 From our local SPARQL endpoint, query: http://linkeddata.uriburner.com/c/9CZWPYT7 result: http://linkeddata.uriburner.com/c/9DNXZYXE I am lost. Any help will be really appreciated. best, Núria On 07/01/2014 01:50 PM, Kingsley Idehen wrote: > On 7/1/14 4:07 AM, Nuria Queralt Rosinach wrote: >> Hi, >> >> On 07/01/2014 12:47 AM, Kingsley Idehen wrote: >>> On 6/30/14 2:24 PM, Nuria Queralt Rosinach wrote: >>>> Hi, >>>> >>>> I repeated the FED using: >>>> >>>> [1] http://linkeddata.uriburner.com/sparql >>>> >>>> >>>> The SPARQL Protocol URL is: >>>> >>>> http://linkeddata.uriburner.com/sparql/?default-graph-uri=&query=PREFIX+atlasterms%3A+%3Chttp%3A%2F%2Frdf.ebi.ac.uk%2Fterms%2Fatlas%2F%3E+%0D%0APREFIX+sio%3A+%3Chttp%3A%2F%2Fsemanticscience.org%2Fresource%2F%3E%0D%0APREFIX+ncit%3A+%3Chttp%3A%2F%2Fncicb.nci.nih.gov%2Fxml%2Fowl%2FEVS%2FThesaurus.owl%23%3E%0D%0ASELECT+%3Fgene+%3Funiprot+%3Fprobe+FROM+%3Chttp%3A%2F%2Frdf.disgenet.org%3E+WHERE+{+++%0D%0A%3Fgda+rdf%3Atype+sio%3ASIO_001123+%3B%0D%0A+++++sio%3ASIO_000628+%3Fgene%2C%3Fdisease+.%0D%0A%3Fgene+rdf%3Atype+ncit%3AC16612+%3B%0D%0A++++++sio%3ASIO_010078+%3Fprotein+.%0D%0A%3Fdisease+rdf%3Atype+ncit%3AC7057+.%0D%0A%3Fprotein+skos%3AexactMatch+%3Funiprot+.%0D%0AFILTER+regex%28str%28%3Funiprot%29%2C%22purl.uniprot.org%22%29+%0D%0A%0D%0ASERVICE+%3Chttp%3A%2F%2Fwww.ebi.ac.uk%2Frdf%2Fservices%2Fatlas%2Fsparql%3E+{%0D%0A%3Fprobe+%3Chttp%3A%2F%2Frdf.ebi.ac.uk%2Fterms%2Fatlas%2FdbXref%3E+%3Funiprot+.%0D%0A}%0D%0A}+%0D%0ALIMIT+20&should-sponge=&format=text%2Fhtml&CXML_redir_for_subjs=121&CXML_redir_for_hrefs=&timeout=30000000&sid= >>>> >>>> >>>> The error message from my system is: >>>> >>>> Content Encoding Error >>>> >>>> The page you are trying to view cannot be shown because it uses an >>>> invalid or unsupported form of compression. >>>> >>>> Please contact the web site owners to inform them of this problem. >>>> >>>> >>>> Then i slightly modified my FED this time using another SERVICE >>>> specification to connect to our SPARQL endpoint service because i was >>>> not sure if the query from [1] need that. The SPARQL Protocol URL is: >>>> >>>> http://linkeddata.uriburner.com/sparql/?default-graph-uri=http%3A%2F%2Frdf.disgenet.org&query=PREFIX+atlasterms%3A+%3Chttp%3A%2F%2Frdf.ebi.ac.uk%2Fterms%2Fatlas%2F%3E+%0D%0APREFIX+sio%3A+%3Chttp%3A%2F%2Fsemanticscience.org%2Fresource%2F%3E%0D%0APREFIX+ncit%3A+%3Chttp%3A%2F%2Fncicb.nci.nih.gov%2Fxml%2Fowl%2FEVS%2FThesaurus.owl%23%3E%0D%0ASELECT+%3Fgene+%3Funiprot+FROM+%3Chttp%3A%2F%2Frdf.disgenet.org%3E+WHERE+{+++%0D%0ASERVICE+%3Chttp%3A%2F%2Frdf.disgenet.org%2Fsparql%2F%3E+{%0D%0A%3Fgda+rdf%3Atype+sio%3ASIO_001123+%3B%0D%0A+++++sio%3ASIO_000628+%3Fgene%2C%3Fdisease+.%0D%0A%3Fgene+rdf%3Atype+ncit%3AC16612+%3B%0D%0A++++++sio%3ASIO_010078+%3Fprotein+.%0D%0A%3Fdisease+rdf%3Atype+ncit%3AC7057+.%0D%0A%3Fprotein+skos%3AexactMatch+%3Funiprot+.%0D%0AFILTER+regex%28str%28%3Funiprot%29%2C%22purl.uniprot.org%22%29+%0D%0A}%0D%0A%0D%0ASERVICE+%3Chttp%3A%2F%2Fwww.ebi.ac.uk%2Frdf%2Fservices%2Fatlas%2Fsparql%3E+{%0D%0A%3Fprobe+%3Chttp%3A%2F%2Frdf.ebi.ac.uk%2Fterms%2Fatlas%2FdbXref%3E+%3Funiprot+.%0D%0A}%0D%0A}+%0D%0ALIMIT+20&should-sponge=&format=text%2Fhtml&CXML_redir_for_subjs=121&CXML_redir_for_hrefs=&timeout=30000000&sid= >>>> >>> A Few things: >>> >>> 1. there's a URI shortener service at <http://linkeddata.uriburner.com/c> >>> 2. you can also share query definition by changing &query to &qtxt . >>> >>> An example of a shortened query definition URL: >>> <http://linkeddata.uriburner.com/c/9D6JOWB7> >> Oh! thanks! that's a fantatic tool! :) thanks for sharing it! >>> At this point in time, the SPARQL endpoint at >>> <http://rdf.disgenet.org/sparql/> isn't working . That skew this >>> entire exercise. >> Oh my god! Could you trying again? I've just checked and the SPARQL >> endpoint at <http://rdf.disgenet.org/sparql/> is working. Yesterday, >> i've checked that some queries work directly in our endpoint, whereas >> they don't work in your URI Burner. For instance: >> >> The query: >> >> PREFIX sio: <http://semanticscience.org/resource/> >> SELECT ?gda FROM <http://rdf.disgenet.org> WHERE { >> ?gda rdf:type sio:SIO_001122 . >> } >> LIMIT 20 >> >> Perfectly works in our endpoint: http://linkeddata.uriburner.com/c/9CTT2XIO >> >> But it does not in the URI Burner: http://linkeddata.uriburner.com/c/9GT25VU >> >> I think i don't correctly write the query in the URI Burner... What do >> you think? >> >> Thanks, >> Núria > Your SPARQL-FED query against URIBurner was incorrect. > > There's a reworked query definition at: > http://linkeddata.uriburner.com/c/9CGN3KPP . > Query Results at: http://linkeddata.uriburner.com/c/9B62ZKSU > > > Kingsley >>> Kingsley >>> >>>> Many thanks! >>>> Núria >>>> >>>> On 06/27/2014 10:14 PM, Kingsley Idehen wrote: >>>>> On 6/27/14 3:21 PM, Nuria Queralt Rosinach wrote: >>>>>> Hi, >>>>>> >>>>>> When i query another sparql endpoint from our endpoint (using >>>>>> SERVICE) i >>>>>> got in Firefox the 'Content encoding error' problem. I checked the >>>>>> virtuoso.log error file but there is nothing related written down. Do >>>>>> you know how could i trace or solve that problem? Many thanks in >>>>>> advance. >>>>>> >>>>>> We are running virtuoso version 07.10.3207, on Linux >>>>>> (x86_64-unknown-linux-gnu), Standard Edition >>>>>> >>>>>> Best regards, >>>>>> Núria >>>>>> >>>>> Please repeat your SPARQL-FED attempt using our URIBurner instance [1]. >>>>> Then share the SPARQL Protocol URL either way. This aid problem >>>>> investigation and resolution. >>>>> >>>>> Also include the error message from your system. >>>>> >>>>> >>>>> Links: >>>>> >>>>> 1. http://linkeddata.uriburner.com/sparql -- URIBurner instance. >>>>> > -- ******************************************************************** Núria Queralt Rosinach Research Programme on Biomedical Informatics (GRIB) Department of Experimental and Health Sciences Universitat Pompeu Fabra IMIM (Hospital del Mar Medical Research Institute) C/Dr. Aiguader 88, 08003 Barcelona, Spain Tel.: +34 93 316 0536 (1536) E-mail: nquer...@imim.es Skype IM: nuriaqr76 http://ibi.imim.es/ ******************************************************************** ------------------------------------------------------------------------------ Open source business process management suite built on Java and Eclipse Turn processes into business applications with Bonita BPM Community Edition Quickly connect people, data, and systems into organized workflows Winner of BOSSIE, CODIE, OW2 and Gartner awards http://p.sf.net/sfu/Bonitasoft _______________________________________________ Virtuoso-users mailing list Virtuoso-users@lists.sourceforge.net https://lists.sourceforge.net/lists/listinfo/virtuoso-users
