On 6/30/14 2:24 PM, Nuria Queralt Rosinach wrote:
Hi,I repeated the FED using: [1] http://linkeddata.uriburner.com/sparql The SPARQL Protocol URL is:http://linkeddata.uriburner.com/sparql/?default-graph-uri=&query=PREFIX+atlasterms%3A+%3Chttp%3A%2F%2Frdf.ebi.ac.uk%2Fterms%2Fatlas%2F%3E+%0D%0APREFIX+sio%3A+%3Chttp%3A%2F%2Fsemanticscience.org%2Fresource%2F%3E%0D%0APREFIX+ncit%3A+%3Chttp%3A%2F%2Fncicb.nci.nih.gov%2Fxml%2Fowl%2FEVS%2FThesaurus.owl%23%3E%0D%0ASELECT+%3Fgene+%3Funiprot+%3Fprobe+FROM+%3Chttp%3A%2F%2Frdf.disgenet.org%3E+WHERE+{+++%0D%0A%3Fgda+rdf%3Atype+sio%3ASIO_001123+%3B%0D%0A+++++sio%3ASIO_000628+%3Fgene%2C%3Fdisease+.%0D%0A%3Fgene+rdf%3Atype+ncit%3AC16612+%3B%0D%0A++++++sio%3ASIO_010078+%3Fprotein+.%0D%0A%3Fdisease+rdf%3Atype+ncit%3AC7057+.%0D%0A%3Fprotein+skos%3AexactMatch+%3Funiprot+.%0D%0AFILTER+regex%28str%28%3Funiprot%29%2C%22purl.uniprot.org%22%29+%0D%0A%0D%0ASERVICE+%3Chttp%3A%2F%2Fwww.ebi.ac.uk%2Frdf%2Fservices%2Fatlas%2Fsparql%3E+{%0D%0A%3Fprobe+%3Chttp%3A%2F%2Frdf.ebi.ac.uk%2Fterms%2Fatlas%2FdbXref%3E+%3Funiprot+.%0D%0A}%0D%0A}+%0D%0ALIMIT+20&should-sponge=&format=text%2Fhtml&CXML_redir_for_subjs=121&CXML_redir_for_hrefs=&timeout=30000000&sid=The error message from my system is: Content Encoding ErrorThe page you are trying to view cannot be shown because it uses an invalid or unsupported form of compression.Please contact the web site owners to inform them of this problem.Then i slightly modified my FED this time using another SERVICE specification to connect to our SPARQL endpoint service because i was not sure if the query from [1] need that. The SPARQL Protocol URL is:http://linkeddata.uriburner.com/sparql/?default-graph-uri=http%3A%2F%2Frdf.disgenet.org&query=PREFIX+atlasterms%3A+%3Chttp%3A%2F%2Frdf.ebi.ac.uk%2Fterms%2Fatlas%2F%3E+%0D%0APREFIX+sio%3A+%3Chttp%3A%2F%2Fsemanticscience.org%2Fresource%2F%3E%0D%0APREFIX+ncit%3A+%3Chttp%3A%2F%2Fncicb.nci.nih.gov%2Fxml%2Fowl%2FEVS%2FThesaurus.owl%23%3E%0D%0ASELECT+%3Fgene+%3Funiprot+FROM+%3Chttp%3A%2F%2Frdf.disgenet.org%3E+WHERE+{+++%0D%0ASERVICE+%3Chttp%3A%2F%2Frdf.disgenet.org%2Fsparql%2F%3E+{%0D%0A%3Fgda+rdf%3Atype+sio%3ASIO_001123+%3B%0D%0A+++++sio%3ASIO_000628+%3Fgene%2C%3Fdisease+.%0D%0A%3Fgene+rdf%3Atype+ncit%3AC16612+%3B%0D%0A++++++sio%3ASIO_010078+%3Fprotein+.%0D%0A%3Fdisease+rdf%3Atype+ncit%3AC7057+.%0D%0A%3Fprotein+skos%3AexactMatch+%3Funiprot+.%0D%0AFILTER+regex%28str%28%3Funiprot%29%2C%22purl.uniprot.org%22%29+%0D%0A}%0D%0A%0D%0ASERVICE+%3Chttp%3A%2F%2Fwww.ebi.ac.uk%2Frdf%2Fservices%2Fatlas%2Fsparql%3E+{%0D%0A%3Fprobe+%3Chttp%3A%2F%2Frdf.ebi.ac.uk%2Fterms%2Fatlas%2FdbXref%3E+%3Funiprot+.%0D%0A}%0D%0A}+%0D%0ALIMIT+20&should-sponge=&format=text%2Fhtml&CXML_redir_for_subjs=121&CXML_redir_for_hrefs=&timeout=30000000&sid=
A Few things: 1. there's a URI shortener service at <http://linkeddata.uriburner.com/c> 2. you can also share query definition by changing &query to &qtxt .An example of a shortened query definition URL: <http://linkeddata.uriburner.com/c/9D6JOWB7>
At this point in time, the SPARQL endpoint at <http://rdf.disgenet.org/sparql/> isn't working . That skew this entire exercise.
Kingsley
Many thanks! Núria On 06/27/2014 10:14 PM, Kingsley Idehen wrote:On 6/27/14 3:21 PM, Nuria Queralt Rosinach wrote:Hi,When i query another sparql endpoint from our endpoint (using SERVICE) igot in Firefox the 'Content encoding error' problem. I checked the virtuoso.log error file but there is nothing related written down. Doyou know how could i trace or solve that problem? Many thanks in advance.We are running virtuoso version 07.10.3207, on Linux (x86_64-unknown-linux-gnu), Standard Edition Best regards, NúriaPlease repeat your SPARQL-FED attempt using our URIBurner instance [1]. Then share the SPARQL Protocol URL either way. This aid problem investigation and resolution. Also include the error message from your system. Links: 1. http://linkeddata.uriburner.com/sparql -- URIBurner instance.
-- Regards, Kingsley Idehen Founder & CEO OpenLink Software Company Web: http://www.openlinksw.com Personal Weblog 1: http://kidehen.blogspot.com Personal Weblog 2: http://www.openlinksw.com/blog/~kidehen Twitter Profile: https://twitter.com/kidehen Google+ Profile: https://plus.google.com/+KingsleyIdehen/about LinkedIn Profile: http://www.linkedin.com/in/kidehen Personal WebID: http://kingsley.idehen.net/dataspace/person/kidehen#this
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