Thomas,

I'm sorry I have no good idea how to debug it further. I'm pretty sure
that the problem is in storing string session on disk, because this is
the only thing that could demonstrate the problem in 1 minute. Even if
box loads 50000 triples per second it can't run out of 4Gb boundary in a
minute, hence the error happens before the parsing takes place.

What happens if you make just
select length (file_to_string_output (source_RDF_file_name))
with same source file with 25 megatriples?
, I guess that you should get same error, so this is really a temp file
problem. But if the Makefile contains FILE64 and there's enough place on
disk then I have no idea.

Best Regards,

Ivan Mikhailov,
OpenLink Software.


On Wed, 2008-03-12 at 14:35 +0100, Thomas Hornung wrote:
> Dear Ivan,
> 
> I can easily copy files of up to several GBs into the directory, where 
> the temporary session file is written to. Interestingly enough, my 
> settings work fine for loading 5.000.000 triples (~500 MB), which takes 
> about 10 mins, but if I try to load the 25.000.000 triples file it fails
> after approx. 1 min. with the posted error message.
> 
> I also tried striping the DB over several files, but unfortunately to no 
> avail. It still gives me the same error message. What confuses me the 
> most, is that the error occurs really fast, as mentioned above in 
> approx. 1 min., so I don't see how the system can run out of memory that 
> fast. The 5.000.0000 file wrote a DB file of about 1GB into the same 
> dir, with no problems.
> 
> I have already deleted the Makefile I used, but attached is the Makefile 
> re-created with no additional options specified (besides I am pretty 
> sure, that I did not use the FILE64 switch).
> 
> 
> Best regards,
> Thomas
> 
> Ivan Mikhailov schrieb:
> > Thomas,
> > 
> > Please check if the root Makefile of your build contains something like
> > CCPLATFORMDEFS = -Dlinux -D_GNU_SOURCE -DFILE64 -D_LARGEFILE64_SOURCE
> > Without detected support of FILE64 the compiled server is unable to keep
> > files that are longer than 4Gb.
> > 
> > Even in bad case you still can deal with big database files by using
> > striping.
> > 
> > For more precise diagnostics I need your Makefile.
> > Additional question is space for temporary session files. They reside in
> > directory specified by TempSesDir parameter of [Parameters] section of
> > configuration file (say, virtuoso.ini); server's working directory is
> > used by default. Can you write, say, a copy of your source-form RDF
> > files to that directory?
> > 
> > Best Regards,
> > 
> > Ivan Mikhailov,
> > OpenLink Software.
> > 
> > On Wed, 2008-03-12 at 12:51 +0100, Thomas Hornung wrote:
> >> Hi,
> >>
> >> unfortunately my load problem doesn't seem to be fixed yet. I can load 
> >> datasets of up to approx. 500 MB (~ 5.000.000 triples), but when trying 
> >> to load a file with 25.000.000 triples (~ 2.7 GB), I get the following 
> >> error message:
> >>
> >> 13:39:06 Can't write to file 
> >> /data/SP2B/sp2b/bench/sparqlengines/virtuoso//sesnZpG6K
> >> File size limit exceeded
> >>
> >> I already checked, and there are no user limits for the file size. The 
> >> used file system is ext3, which should support files of at least up to 
> >> 16 GB, so this cannot be the problem either.
> >>
> >> The weirdest thing is that the files:
> >>
> >> virtuoso.trx
> >> virtuoso.db
> >>
> >> do not change their initial size after the start of the load, which 
> >> normally happened for the other file sizes.
> >>
> >> I am using the following load command, which works fine for the 
> >> "smaller" files:
> >>
> >> ttlp_mt 
> >> (file_to_string_output('/data/SP2B/sp2b/bench/data/rdf/dblp25000000.n3'), 
> >> '', 'http://my_graph', 0);
> >>
> >> Am I missing something obvious here?
> >>
> >>
> >> Best regards,
> >> Thomas
> >>
> >>
> >> Ivan Mikhailov schrieb:
> >>> Thomas,
> >>>
> >>> Yes, DB.DBA.TTLP_MT() is more suitable. Among other things it does not
> >>> try to fit everything into single transaction.
> >>>
> >>> Best Regards,
> >>>
> >>> Ivan Mikhailov,
> >>> OpenLink Software.
> >>>
> >>> On Fri, 2008-02-22 at 15:03 +0100, Thomas Hornung wrote:
> >>>> Hi,
> >>>>
> >>>> I have a problem when I try to load a "large" (~109MB, approx. 1.000.000 
> >>>> triples) RDF data set into Virtuoso. Ideally I'd like to load files of 
> >>>> up to several GBs into Virtuoso.
> >>>>
> >>>> I always get the same error message:
> >>>>
> >>>> Connected to OpenLink Virtuoso
> >>>> Driver: 05.00.3026 OpenLink Virtuoso ODBC Driver
> >>>>
> >>>> *** Error 40005: [Virtuoso Driver][Virtuoso Server]SR325: Transaction 
> >>>> aborted because it's log after image size went above the limit
> >>>> at line 2 of Command-Line-Load virtuoso_cmds/load_1000000.virtuoso:
> >>>> ttlp (file_to_string_output(...)
> >>>>
> >>>> *** Error 40005: [Virtuoso Driver][Virtuoso Server]SR325: Transaction 
> >>>> aborted because it's log after image size went above the limit
> >>>> at line 2 of Command-Line-Load virtuoso_cmds/load_1000000.virtuoso:
> >>>> ttlp (file_to_string_output(...)
> >>>> OK
> >>>>
> >>>>
> >>>> Where can I increment the image/log size? Or am I using the wrong 
> >>>> command, i.e. is ttlp the wrong command for bulk loading?
> >>>>
> >>>> Thanks,
> >>>> Thomas
> > 
> > 
> 
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>       list='$(SOURCES) $(HEADERS)  $(LISP) $(TAGS_FILES)'; \
>       unique=`for i in $$list; do \
>           if test -f "$$i"; then echo $$i; else echo $(srcdir)/$$i; fi; \
>         done | \
>         $(AWK) '    { files[$$0] = 1; } \
>              END { for (i in files) print i; }'`; \
>       if test -z "$(ETAGS_ARGS)$$tags$$unique"; then :; else \
>         test -n "$$unique" || unique=$$empty_fix; \
>         $(ETAGS) $(ETAGSFLAGS) $(AM_ETAGSFLAGS) $(ETAGS_ARGS) \
>           $$tags $$unique; \
>       fi
> ctags: CTAGS
> CTAGS: ctags-recursive $(HEADERS) $(SOURCES)  $(TAGS_DEPENDENCIES) \
>               $(TAGS_FILES) $(LISP)
>       tags=; \
>       here=`pwd`; \
>       list='$(SOURCES) $(HEADERS)  $(LISP) $(TAGS_FILES)'; \
>       unique=`for i in $$list; do \
>           if test -f "$$i"; then echo $$i; else echo $(srcdir)/$$i; fi; \
>         done | \
>         $(AWK) '    { files[$$0] = 1; } \
>              END { for (i in files) print i; }'`; \
>       test -z "$(CTAGS_ARGS)$$tags$$unique" \
>         || $(CTAGS) $(CTAGSFLAGS) $(AM_CTAGSFLAGS) $(CTAGS_ARGS) \
>            $$tags $$unique
> 
> GTAGS:
>       here=`$(am__cd) $(top_builddir) && pwd` \
>         && cd $(top_srcdir) \
>         && gtags -i $(GTAGS_ARGS) $$here
> 
> distclean-tags:
>       -rm -f TAGS ID GTAGS GRTAGS GSYMS GPATH tags
> 
> distdir: $(DISTFILES)
>       $(am__remove_distdir)
>       test -d $(distdir) || mkdir $(distdir)
>       @srcdirstrip=`echo "$(srcdir)" | sed 's/[].[^$$\\*]/\\\\&/g'`; \
>       topsrcdirstrip=`echo "$(top_srcdir)" | sed 's/[].[^$$\\*]/\\\\&/g'`; \
>       list='$(DISTFILES)'; \
>         dist_files=`for file in $$list; do echo $$file; done | \
>         sed -e "s|^$$srcdirstrip/||;t" \
>             -e "s|^$$topsrcdirstrip/|$(top_builddir)/|;t"`; \
>       case $$dist_files in \
>         */*) $(MKDIR_P) `echo "$$dist_files" | \
>                          sed '/\//!d;s|^|$(distdir)/|;s,/[^/]*$$,,' | \
>                          sort -u` ;; \
>       esac; \
>       for file in $$dist_files; do \
>         if test -f $$file || test -d $$file; then d=.; else d=$(srcdir); fi; \
>         if test -d $$d/$$file; then \
>           dir=`echo "/$$file" | sed -e 's,/[^/]*$$,,'`; \
>           if test -d $(srcdir)/$$file && test $$d != $(srcdir); then \
>             cp -pR $(srcdir)/$$file $(distdir)$$dir || exit 1; \
>           fi; \
>           cp -pR $$d/$$file $(distdir)$$dir || exit 1; \
>         else \
>           test -f $(distdir)/$$file \
>           || cp -p $$d/$$file $(distdir)/$$file \
>           || exit 1; \
>         fi; \
>       done
>       list='$(DIST_SUBDIRS)'; for subdir in $$list; do \
>         if test "$$subdir" = .; then :; else \
>           test -d "$(distdir)/$$subdir" \
>           || $(MKDIR_P) "$(distdir)/$$subdir" \
>           || exit 1; \
>           distdir=`$(am__cd) $(distdir) && pwd`; \
>           top_distdir=`$(am__cd) $(top_distdir) && pwd`; \
>           (cd $$subdir && \
>             $(MAKE) $(AM_MAKEFLAGS) \
>               top_distdir="$$top_distdir" \
>               distdir="$$distdir/$$subdir" \
>               am__remove_distdir=: \
>               am__skip_length_check=: \
>               distdir) \
>             || exit 1; \
>         fi; \
>       done
>       -find $(distdir) -type d ! -perm -777 -exec chmod a+rwx {} \; -o \
>         ! -type d ! -perm -444 -links 1 -exec chmod a+r {} \; -o \
>         ! -type d ! -perm -400 -exec chmod a+r {} \; -o \
>         ! -type d ! -perm -444 -exec $(install_sh) -c -m a+r {} {} \; \
>       || chmod -R a+r $(distdir)
> dist-gzip: distdir
>       tardir=$(distdir) && $(am__tar) | GZIP=$(GZIP_ENV) gzip -c 
> >$(distdir).tar.gz
>       $(am__remove_distdir)
> 
> dist-bzip2: distdir
>       tardir=$(distdir) && $(am__tar) | bzip2 -9 -c >$(distdir).tar.bz2
>       $(am__remove_distdir)
> 
> dist-tarZ: distdir
>       tardir=$(distdir) && $(am__tar) | compress -c >$(distdir).tar.Z
>       $(am__remove_distdir)
> 
> dist-shar: distdir
>       shar $(distdir) | GZIP=$(GZIP_ENV) gzip -c >$(distdir).shar.gz
>       $(am__remove_distdir)
> 
> dist-zip: distdir
>       -rm -f $(distdir).zip
>       zip -rq $(distdir).zip $(distdir)
>       $(am__remove_distdir)
> 
> dist dist-all: distdir
>       tardir=$(distdir) && $(am__tar) | GZIP=$(GZIP_ENV) gzip -c 
> >$(distdir).tar.gz
>       $(am__remove_distdir)
> 
> # This target untars the dist file and tries a VPATH configuration.  Then
> # it guarantees that the distribution is self-contained by making another
> # tarfile.
> distcheck: dist
>       case '$(DIST_ARCHIVES)' in \
>       *.tar.gz*) \
>         GZIP=$(GZIP_ENV) gunzip -c $(distdir).tar.gz | $(am__untar) ;;\
>       *.tar.bz2*) \
>         bunzip2 -c $(distdir).tar.bz2 | $(am__untar) ;;\
>       *.tar.Z*) \
>         uncompress -c $(distdir).tar.Z | $(am__untar) ;;\
>       *.shar.gz*) \
>         GZIP=$(GZIP_ENV) gunzip -c $(distdir).shar.gz | unshar ;;\
>       *.zip*) \
>         unzip $(distdir).zip ;;\
>       esac
>       chmod -R a-w $(distdir); chmod a+w $(distdir)
>       mkdir $(distdir)/_build
>       mkdir $(distdir)/_inst
>       chmod a-w $(distdir)
>       dc_install_base=`$(am__cd) $(distdir)/_inst && pwd | sed -e 
> 's,^[^:\\/]:[\\/],/,'` \
>         && dc_destdir="$${TMPDIR-/tmp}/am-dc-$$$$/" \
>         && cd $(distdir)/_build \
>         && ../configure --srcdir=.. --prefix="$$dc_install_base" \
>           $(DISTCHECK_CONFIGURE_FLAGS) \
>         && $(MAKE) $(AM_MAKEFLAGS) \
>         && $(MAKE) $(AM_MAKEFLAGS) dvi \
>         && $(MAKE) $(AM_MAKEFLAGS) check \
>         && $(MAKE) $(AM_MAKEFLAGS) install \
>         && $(MAKE) $(AM_MAKEFLAGS) installcheck \
>         && $(MAKE) $(AM_MAKEFLAGS) uninstall \
>         && $(MAKE) $(AM_MAKEFLAGS) distuninstallcheck_dir="$$dc_install_base" 
> \
>               distuninstallcheck \
>         && chmod -R a-w "$$dc_install_base" \
>         && ({ \
>              (cd ../.. && umask 077 && mkdir "$$dc_destdir") \
>              && $(MAKE) $(AM_MAKEFLAGS) DESTDIR="$$dc_destdir" install \
>              && $(MAKE) $(AM_MAKEFLAGS) DESTDIR="$$dc_destdir" uninstall \
>              && $(MAKE) $(AM_MAKEFLAGS) DESTDIR="$$dc_destdir" \
>                   distuninstallcheck_dir="$$dc_destdir" distuninstallcheck; \
>             } || { rm -rf "$$dc_destdir"; exit 1; }) \
>         && rm -rf "$$dc_destdir" \
>         && $(MAKE) $(AM_MAKEFLAGS) dist \
>         && rm -rf $(DIST_ARCHIVES) \
>         && $(MAKE) $(AM_MAKEFLAGS) distcleancheck
>       $(am__remove_distdir)
>       @(echo "$(distdir) archives ready for distribution: "; \
>         list='$(DIST_ARCHIVES)'; for i in $$list; do echo $$i; done) | \
>         sed -e 1h -e 1s/./=/g -e 1p -e 1x -e '$$p' -e '$$x'
> distuninstallcheck:
>       @cd $(distuninstallcheck_dir) \
>       && test `$(distuninstallcheck_listfiles) | wc -l` -le 1 \
>          || { echo "ERROR: files left after uninstall:" ; \
>               if test -n "$(DESTDIR)"; then \
>                 echo "  (check DESTDIR support)"; \
>               fi ; \
>               $(distuninstallcheck_listfiles) ; \
>               exit 1; } >&2
> distcleancheck: distclean
>       @if test '$(srcdir)' = . ; then \
>         echo "ERROR: distcleancheck can only run from a VPATH build" ; \
>         exit 1 ; \
>       fi
>       @test `$(distcleancheck_listfiles) | wc -l` -eq 0 \
>         || { echo "ERROR: files left in build directory after distclean:" ; \
>              $(distcleancheck_listfiles) ; \
>              exit 1; } >&2
> check-am: all-am
> check: check-recursive
> all-am: Makefile
> installdirs: installdirs-recursive
> installdirs-am:
> install: install-recursive
> install-exec: install-exec-recursive
> install-data: install-data-recursive
> uninstall: uninstall-recursive
> 
> install-am: all-am
>       @$(MAKE) $(AM_MAKEFLAGS) install-exec-am install-data-am
> 
> installcheck: installcheck-recursive
> install-strip:
>       $(MAKE) $(AM_MAKEFLAGS) INSTALL_PROGRAM="$(INSTALL_STRIP_PROGRAM)" \
>         install_sh_PROGRAM="$(INSTALL_STRIP_PROGRAM)" INSTALL_STRIP_FLAG=-s \
>         `test -z '$(STRIP)' || \
>           echo "INSTALL_PROGRAM_ENV=STRIPPROG='$(STRIP)'"` install
> mostlyclean-generic:
> 
> clean-generic:
> 
> distclean-generic:
>       -test -z "$(CONFIG_CLEAN_FILES)" || rm -f $(CONFIG_CLEAN_FILES)
> 
> maintainer-clean-generic:
>       @echo "This command is intended for maintainers to use"
>       @echo "it deletes files that may require special tools to rebuild."
>       -test -z "$(MAINTAINERCLEANFILES)" || rm -f $(MAINTAINERCLEANFILES)
> clean: clean-recursive
> 
> clean-am: clean-generic clean-libtool mostlyclean-am
> 
> distclean: distclean-recursive
>       -rm -f $(am__CONFIG_DISTCLEAN_FILES)
>       -rm -f Makefile
> distclean-am: clean-am distclean-generic distclean-libtool \
>       distclean-tags
> 
> dvi: dvi-recursive
> 
> dvi-am:
> 
> html: html-recursive
> 
> info: info-recursive
> 
> info-am:
> 
> install-data-am:
> 
> install-dvi: install-dvi-recursive
> 
> install-exec-am:
> 
> install-html: install-html-recursive
> 
> install-info: install-info-recursive
> 
> install-man:
> 
> install-pdf: install-pdf-recursive
> 
> install-ps: install-ps-recursive
> 
> installcheck-am:
> 
> maintainer-clean: maintainer-clean-recursive
>       -rm -f $(am__CONFIG_DISTCLEAN_FILES)
>       -rm -rf $(top_srcdir)/autom4te.cache
>       -rm -f Makefile
> maintainer-clean-am: distclean-am maintainer-clean-generic
> 
> mostlyclean: mostlyclean-recursive
> 
> mostlyclean-am: mostlyclean-generic mostlyclean-libtool
> 
> pdf: pdf-recursive
> 
> pdf-am:
> 
> ps: ps-recursive
> 
> ps-am:
> 
> uninstall-am:
> 
> .MAKE: $(RECURSIVE_CLEAN_TARGETS) $(RECURSIVE_TARGETS) install-am \
>       install-strip
> 
> .PHONY: $(RECURSIVE_CLEAN_TARGETS) $(RECURSIVE_TARGETS) CTAGS GTAGS \
>       all all-am am--refresh check check-am clean clean-generic \
>       clean-libtool ctags ctags-recursive dist dist-all dist-bzip2 \
>       dist-gzip dist-shar dist-tarZ dist-zip distcheck distclean \
>       distclean-generic distclean-libtool distclean-tags \
>       distcleancheck distdir distuninstallcheck dvi dvi-am html \
>       html-am info info-am install install-am install-data \
>       install-data-am install-dvi install-dvi-am install-exec \
>       install-exec-am install-html install-html-am install-info \
>       install-info-am install-man install-pdf install-pdf-am \
>       install-ps install-ps-am install-strip installcheck \
>       installcheck-am installdirs installdirs-am maintainer-clean \
>       maintainer-clean-generic mostlyclean mostlyclean-generic \
>       mostlyclean-libtool pdf pdf-am ps ps-am tags tags-recursive \
>       uninstall uninstall-am
> 
> 
> #
> #  Create a tar file containing a binary installation
> #
> #binary-tar:
> #     -mkdir i686-pc-linux-gnu
> #     $(MAKE) install DESTDIR="`pwd`/i686-pc-linux-gnu/tmp/" prefix=..
> #     tar cvf i686-pc-linux-gnu.tar i686-pc-linux-gnu
> #     gzip -9vf i686-pc-linux-gnu.tar
> #     rm -rf i686-pc-linux-gnu
> 
> #
> #  Create an official release package
> #
> #release:
> #     $(MAKE) distcheck
> 
> #
> #  Generate ChangeLog
> #
> #changelog:
> #     cvs2cl --no-wrap --utc --hide-filenames --prune --window 86400
> 
> #
> #  Create a source snapshot package
> #
> snapshot:
>       $(MAKE) dist distdir=$(PACKAGE)-`date +"%Y%m%d"`
> # Tell versions [3.59,3.63) of GNU make to not export all variables.
> # Otherwise a system limit (for SysV at least) may be exceeded.
> .NOEXPORT:
> -------------------------------------------------------------------------
> This SF.net email is sponsored by: Microsoft
> Defy all challenges. Microsoft(R) Visual Studio 2008.
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> _______________________________________________ Virtuoso-users mailing list 
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