Dear Ivan,
I can easily copy files of up to several GBs into the directory, where
the temporary session file is written to. Interestingly enough, my
settings work fine for loading 5.000.000 triples (~500 MB), which takes
about 10 mins, but if I try to load the 25.000.000 triples file it fails
after approx. 1 min. with the posted error message.
I also tried striping the DB over several files, but unfortunately to no
avail. It still gives me the same error message. What confuses me the
most, is that the error occurs really fast, as mentioned above in
approx. 1 min., so I don't see how the system can run out of memory that
fast. The 5.000.0000 file wrote a DB file of about 1GB into the same
dir, with no problems.
I have already deleted the Makefile I used, but attached is the Makefile
re-created with no additional options specified (besides I am pretty
sure, that I did not use the FILE64 switch).
Best regards,
Thomas
Ivan Mikhailov schrieb:
Thomas,
Please check if the root Makefile of your build contains something like
CCPLATFORMDEFS = -Dlinux -D_GNU_SOURCE -DFILE64 -D_LARGEFILE64_SOURCE
Without detected support of FILE64 the compiled server is unable to keep
files that are longer than 4Gb.
Even in bad case you still can deal with big database files by using
striping.
For more precise diagnostics I need your Makefile.
Additional question is space for temporary session files. They reside in
directory specified by TempSesDir parameter of [Parameters] section of
configuration file (say, virtuoso.ini); server's working directory is
used by default. Can you write, say, a copy of your source-form RDF
files to that directory?
Best Regards,
Ivan Mikhailov,
OpenLink Software.
On Wed, 2008-03-12 at 12:51 +0100, Thomas Hornung wrote:
Hi,
unfortunately my load problem doesn't seem to be fixed yet. I can load
datasets of up to approx. 500 MB (~ 5.000.000 triples), but when trying
to load a file with 25.000.000 triples (~ 2.7 GB), I get the following
error message:
13:39:06 Can't write to file
/data/SP2B/sp2b/bench/sparqlengines/virtuoso//sesnZpG6K
File size limit exceeded
I already checked, and there are no user limits for the file size. The
used file system is ext3, which should support files of at least up to
16 GB, so this cannot be the problem either.
The weirdest thing is that the files:
virtuoso.trx
virtuoso.db
do not change their initial size after the start of the load, which
normally happened for the other file sizes.
I am using the following load command, which works fine for the
"smaller" files:
ttlp_mt
(file_to_string_output('/data/SP2B/sp2b/bench/data/rdf/dblp25000000.n3'),
'', 'http://my_graph', 0);
Am I missing something obvious here?
Best regards,
Thomas
Ivan Mikhailov schrieb:
Thomas,
Yes, DB.DBA.TTLP_MT() is more suitable. Among other things it does not
try to fit everything into single transaction.
Best Regards,
Ivan Mikhailov,
OpenLink Software.
On Fri, 2008-02-22 at 15:03 +0100, Thomas Hornung wrote:
Hi,
I have a problem when I try to load a "large" (~109MB, approx. 1.000.000
triples) RDF data set into Virtuoso. Ideally I'd like to load files of
up to several GBs into Virtuoso.
I always get the same error message:
Connected to OpenLink Virtuoso
Driver: 05.00.3026 OpenLink Virtuoso ODBC Driver
*** Error 40005: [Virtuoso Driver][Virtuoso Server]SR325: Transaction
aborted because it's log after image size went above the limit
at line 2 of Command-Line-Load virtuoso_cmds/load_1000000.virtuoso:
ttlp (file_to_string_output(...)
*** Error 40005: [Virtuoso Driver][Virtuoso Server]SR325: Transaction
aborted because it's log after image size went above the limit
at line 2 of Command-Line-Load virtuoso_cmds/load_1000000.virtuoso:
ttlp (file_to_string_output(...)
OK
Where can I increment the image/log size? Or am I using the wrong
command, i.e. is ttlp the wrong command for bulk loading?
Thanks,
Thomas
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$(am__remove_distdir)
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tardir=$(distdir) && $(am__tar) | bzip2 -9 -c >$(distdir).tar.bz2
$(am__remove_distdir)
dist-tarZ: distdir
tardir=$(distdir) && $(am__tar) | compress -c >$(distdir).tar.Z
$(am__remove_distdir)
dist-shar: distdir
shar $(distdir) | GZIP=$(GZIP_ENV) gzip -c >$(distdir).shar.gz
$(am__remove_distdir)
dist-zip: distdir
-rm -f $(distdir).zip
zip -rq $(distdir).zip $(distdir)
$(am__remove_distdir)
dist dist-all: distdir
tardir=$(distdir) && $(am__tar) | GZIP=$(GZIP_ENV) gzip -c
>$(distdir).tar.gz
$(am__remove_distdir)
# This target untars the dist file and tries a VPATH configuration. Then
# it guarantees that the distribution is self-contained by making another
# tarfile.
distcheck: dist
case '$(DIST_ARCHIVES)' in \
*.tar.gz*) \
GZIP=$(GZIP_ENV) gunzip -c $(distdir).tar.gz | $(am__untar) ;;\
*.tar.bz2*) \
bunzip2 -c $(distdir).tar.bz2 | $(am__untar) ;;\
*.tar.Z*) \
uncompress -c $(distdir).tar.Z | $(am__untar) ;;\
*.shar.gz*) \
GZIP=$(GZIP_ENV) gunzip -c $(distdir).shar.gz | unshar ;;\
*.zip*) \
unzip $(distdir).zip ;;\
esac
chmod -R a-w $(distdir); chmod a+w $(distdir)
mkdir $(distdir)/_build
mkdir $(distdir)/_inst
chmod a-w $(distdir)
dc_install_base=`$(am__cd) $(distdir)/_inst && pwd | sed -e
's,^[^:\\/]:[\\/],/,'` \
&& dc_destdir="$${TMPDIR-/tmp}/am-dc-$$$$/" \
&& cd $(distdir)/_build \
&& ../configure --srcdir=.. --prefix="$$dc_install_base" \
$(DISTCHECK_CONFIGURE_FLAGS) \
&& $(MAKE) $(AM_MAKEFLAGS) \
&& $(MAKE) $(AM_MAKEFLAGS) dvi \
&& $(MAKE) $(AM_MAKEFLAGS) check \
&& $(MAKE) $(AM_MAKEFLAGS) install \
&& $(MAKE) $(AM_MAKEFLAGS) installcheck \
&& $(MAKE) $(AM_MAKEFLAGS) uninstall \
&& $(MAKE) $(AM_MAKEFLAGS) distuninstallcheck_dir="$$dc_install_base"
\
distuninstallcheck \
&& chmod -R a-w "$$dc_install_base" \
&& ({ \
(cd ../.. && umask 077 && mkdir "$$dc_destdir") \
&& $(MAKE) $(AM_MAKEFLAGS) DESTDIR="$$dc_destdir" install \
&& $(MAKE) $(AM_MAKEFLAGS) DESTDIR="$$dc_destdir" uninstall \
&& $(MAKE) $(AM_MAKEFLAGS) DESTDIR="$$dc_destdir" \
distuninstallcheck_dir="$$dc_destdir" distuninstallcheck; \
} || { rm -rf "$$dc_destdir"; exit 1; }) \
&& rm -rf "$$dc_destdir" \
&& $(MAKE) $(AM_MAKEFLAGS) dist \
&& rm -rf $(DIST_ARCHIVES) \
&& $(MAKE) $(AM_MAKEFLAGS) distcleancheck
$(am__remove_distdir)
@(echo "$(distdir) archives ready for distribution: "; \
list='$(DIST_ARCHIVES)'; for i in $$list; do echo $$i; done) | \
sed -e 1h -e 1s/./=/g -e 1p -e 1x -e '$$p' -e '$$x'
distuninstallcheck:
@cd $(distuninstallcheck_dir) \
&& test `$(distuninstallcheck_listfiles) | wc -l` -le 1 \
|| { echo "ERROR: files left after uninstall:" ; \
if test -n "$(DESTDIR)"; then \
echo " (check DESTDIR support)"; \
fi ; \
$(distuninstallcheck_listfiles) ; \
exit 1; } >&2
distcleancheck: distclean
@if test '$(srcdir)' = . ; then \
echo "ERROR: distcleancheck can only run from a VPATH build" ; \
exit 1 ; \
fi
@test `$(distcleancheck_listfiles) | wc -l` -eq 0 \
|| { echo "ERROR: files left in build directory after distclean:" ; \
$(distcleancheck_listfiles) ; \
exit 1; } >&2
check-am: all-am
check: check-recursive
all-am: Makefile
installdirs: installdirs-recursive
installdirs-am:
install: install-recursive
install-exec: install-exec-recursive
install-data: install-data-recursive
uninstall: uninstall-recursive
install-am: all-am
@$(MAKE) $(AM_MAKEFLAGS) install-exec-am install-data-am
installcheck: installcheck-recursive
install-strip:
$(MAKE) $(AM_MAKEFLAGS) INSTALL_PROGRAM="$(INSTALL_STRIP_PROGRAM)" \
install_sh_PROGRAM="$(INSTALL_STRIP_PROGRAM)" INSTALL_STRIP_FLAG=-s \
`test -z '$(STRIP)' || \
echo "INSTALL_PROGRAM_ENV=STRIPPROG='$(STRIP)'"` install
mostlyclean-generic:
clean-generic:
distclean-generic:
-test -z "$(CONFIG_CLEAN_FILES)" || rm -f $(CONFIG_CLEAN_FILES)
maintainer-clean-generic:
@echo "This command is intended for maintainers to use"
@echo "it deletes files that may require special tools to rebuild."
-test -z "$(MAINTAINERCLEANFILES)" || rm -f $(MAINTAINERCLEANFILES)
clean: clean-recursive
clean-am: clean-generic clean-libtool mostlyclean-am
distclean: distclean-recursive
-rm -f $(am__CONFIG_DISTCLEAN_FILES)
-rm -f Makefile
distclean-am: clean-am distclean-generic distclean-libtool \
distclean-tags
dvi: dvi-recursive
dvi-am:
html: html-recursive
info: info-recursive
info-am:
install-data-am:
install-dvi: install-dvi-recursive
install-exec-am:
install-html: install-html-recursive
install-info: install-info-recursive
install-man:
install-pdf: install-pdf-recursive
install-ps: install-ps-recursive
installcheck-am:
maintainer-clean: maintainer-clean-recursive
-rm -f $(am__CONFIG_DISTCLEAN_FILES)
-rm -rf $(top_srcdir)/autom4te.cache
-rm -f Makefile
maintainer-clean-am: distclean-am maintainer-clean-generic
mostlyclean: mostlyclean-recursive
mostlyclean-am: mostlyclean-generic mostlyclean-libtool
pdf: pdf-recursive
pdf-am:
ps: ps-recursive
ps-am:
uninstall-am:
.MAKE: $(RECURSIVE_CLEAN_TARGETS) $(RECURSIVE_TARGETS) install-am \
install-strip
.PHONY: $(RECURSIVE_CLEAN_TARGETS) $(RECURSIVE_TARGETS) CTAGS GTAGS \
all all-am am--refresh check check-am clean clean-generic \
clean-libtool ctags ctags-recursive dist dist-all dist-bzip2 \
dist-gzip dist-shar dist-tarZ dist-zip distcheck distclean \
distclean-generic distclean-libtool distclean-tags \
distcleancheck distdir distuninstallcheck dvi dvi-am html \
html-am info info-am install install-am install-data \
install-data-am install-dvi install-dvi-am install-exec \
install-exec-am install-html install-html-am install-info \
install-info-am install-man install-pdf install-pdf-am \
install-ps install-ps-am install-strip installcheck \
installcheck-am installdirs installdirs-am maintainer-clean \
maintainer-clean-generic mostlyclean mostlyclean-generic \
mostlyclean-libtool pdf pdf-am ps ps-am tags tags-recursive \
uninstall uninstall-am
#
# Create a tar file containing a binary installation
#
#binary-tar:
# -mkdir i686-pc-linux-gnu
# $(MAKE) install DESTDIR="`pwd`/i686-pc-linux-gnu/tmp/" prefix=..
# tar cvf i686-pc-linux-gnu.tar i686-pc-linux-gnu
# gzip -9vf i686-pc-linux-gnu.tar
# rm -rf i686-pc-linux-gnu
#
# Create an official release package
#
#release:
# $(MAKE) distcheck
#
# Generate ChangeLog
#
#changelog:
# cvs2cl --no-wrap --utc --hide-filenames --prune --window 86400
#
# Create a source snapshot package
#
snapshot:
$(MAKE) dist distdir=$(PACKAGE)-`date +"%Y%m%d"`
# Tell versions [3.59,3.63) of GNU make to not export all variables.
# Otherwise a system limit (for SysV at least) may be exceeded.
.NOEXPORT:
