Paladine:
I've only quickly skimmed this report but using -new for appropriate cards is 
effectively Bug #93209 but Bug #106649 is more targeted. The hidden file 
problem is bug #106217 . restricted-manager is supposed to leave already 
installed binary NVIDIA drivers alone so it will help if you carefully outline 
when this doesn't happen, how often you can reproduce the issue and the steps 
that can be followed that always reproduce the issue (this is definitely worth 
investigating). It's best to stick to one issue per bug even if the issues 
initially look related otherwise things can be come unfocussed and it becomes 
impossible to duplicate one bug on another bug.

If someone goes down the manual binary driver installation route they
are on their own (you can do what you like to your own system but you
have to live with the consequences). The reasoning is that they have
stepped outside the packaging system thus it is impossible to safely
clean up because you don't know what has been done and you don't know
how to undo it. Anything you do will be a guess and it could be a guess
that just leads to more problems (if someone has done two manual
installs on top of another you may never be able to find your original
mesa libraries which the original install moved out of the way). A fine
point though and hopefully
https://help.ubuntu.com/community/NvidiaManual will be updated to
reflect this.

Driver mismatches happen for a lot of reasons (e.g. missing drivers,
manual install conflicting with repository drivers etc) and it is
dangerous to create an issue called "driver mismatch" because all these
different problems will be lumped together confusing people.

I hope this is useful.

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Restricted Drivers Manager and NVidia
https://bugs.launchpad.net/bugs/131852
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