When non-security updates are available, Update Manager should open
automatically whichever is later: (a) X days after it was last open,
whether that was manually or automatically, or (b) X days after updates
were installed by any apt-powered method. X should default to 7.

When security updates are available, Update Manager should open
automatically whichever is later: (a) Y days after it was last open,
whether that was manually or automatically, or (b) Y days after updates
were installed by any apt-powered method. Y should default to 1.

So yes, it is intentional that running apt-get update shouldn't cause
Update Manager to open automatically. If you run apt-get update
manually, it's highly likely that you're about to install updates
manually too, in which case you don't want Update Manager getting in
your way.

-- 
update-manager auto-opened after each apt use when security updates available
https://bugs.launchpad.net/bugs/369198
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