I have hade the same Problem on a Laptop, i fixed it with dconf-editor:
"use-system-keyboard-layout" property is enabled (But thats a
Workaround)
But now i have a 5 year old ACER Veriton T661, have installed Ubuntu
14.04.1 - Result: no Problem Keyboard keeps SwissGerman like adjusted.
Then i have
I Play the Game with the Motherboard Battery 2 times more until now,
result is the same as above.
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https://bugs.launchpad.net/bugs/1240198
Title:
Wrong keyboard layout active after boot
