Re: [slurm-users] slurm-19.05 link error

2019-07-24 Thread Weiguang Chen
That's my locate command output, in order to i have installed hdf5. The end of the output is the standard library location where also have installed hdf5. Goetz, Patrick G 于2019年7月24日周三 下午11:19写道: > Why are you searching your miniconda environment for library files? All > the HDF5 stuff from t

Re: [slurm-users] slurm-19.05 link error

2019-07-24 Thread Goetz, Patrick G
Why are you searching your miniconda environment for library files? All the HDF5 stuff from the Arch package gets installed in standard library locations. On 7/23/19 9:47 PM, Weiguang Chen wrote: > Thanks for you fast response. > I have installed hdf5 by pacman -S hdf5 > (base) [zznu@archlinux

Re: [slurm-users] slurm-19.05 link error

2019-07-23 Thread Weiguang Chen
I did the default installaiton by yaourt. HDF5 is not necessary, I will try it again by without hdf5. Thanks. Chris Samuel 于2019年7月24日周三 下午12:57写道: > On Tuesday, 23 July 2019 7:47:33 PM PDT Weiguang Chen wrote: > > > I just reinstalled hdf5, but the error still exist. > > Are you going to use HD

Re: [slurm-users] slurm-19.05 link error

2019-07-23 Thread Chris Samuel
On Tuesday, 23 July 2019 7:47:33 PM PDT Weiguang Chen wrote: > I just reinstalled hdf5, but the error still exist. Are you going to use HDF5 actively? If not tell configure not to use it by adding the --with-hdf5=no flag to your configure line. -- Chris Samuel : http://www.csamuel.org/ :

Re: [slurm-users] slurm-19.05 link error

2019-07-23 Thread Weiguang Chen
Thanks for you fast response. I have installed hdf5 by pacman -S hdf5 (base) [zznu@archlinux ~]$ locate hdf5 /home/zznu/.virtualenvs/aiida/lib/python3.7/site-packages/scipy/io/matlab/tests/data/testhdf5_7.4_GLNX86.mat /home/zznu/magenta/lib/python2.7/site-packages/scipy/io/matlab/tests/data/testhdf

Re: [slurm-users] slurm-19.05 link error

2019-07-23 Thread Philip Kovacs
Looks like you need to install hdf5, development headers and libraries. On Tuesday, July 23, 2019, 08:52:06 PM EDT, Weiguang Chen wrote: Hi,   I’m installing slurm in myArchlinux Server. At the beginning, I used AUR helper yaourt to install it. yaourt -S slurm-llnl But an error

[slurm-users] slurm-19.05 link error

2019-07-23 Thread Weiguang Chen
Hi, I’m installing slurm in my Archlinux Server. At the beginning, I used AUR helper yaourt to install it. yaourt -S slurm-llnl But an error occur while compiling sh5util, as follow: libtool: link: gcc -DNUMA_VERSION1_COMPATIBILITY -march=x86-64 -mtune=generic -O2 -pipe -pthread -ggdb3 -Wall