Looks like you need to install hdf5, development headers and libraries.
On Tuesday, July 23, 2019, 08:52:06 PM EDT, Weiguang Chen
<chenweiguan...@gmail.com> wrote:
Hi,
I’m installing slurm in myArchlinux Server.
At the beginning, I used AUR helper yaourt to install it.
yaourt -S slurm-llnl
But an error occur while compiling sh5util, as follow:
libtool: link: gcc -DNUMA_VERSION1_COMPATIBILITY -march=x86-64-mtune=generic
-O2 -pipe -pthread -ggdb3 -Wall -g -O1 -fno-strict-aliasing-Wl,-O1
-Wl,--sort-common -Wl,--as-needed -Wl
,-z -Wl,relro -Wl,-z -Wl,lazy -o .libs/sh5util sh5util.o
-Wl,-rpath=/usr/lib/slurm-Wl,--export-dynamic
-L/home/zznu/miniconda3/lib-L../../../../../src/api/.libs/tmp/yaourt-tmp-zznu/aur-slurm-llnl/src/slurm-slurm-19-05-0-1/src/api/.libs/libslurmfull.so../.libs/libhdf5_api.a
-lm -ldl -lz -lpthread -lrt -lhdf5 -pthread -Wl,-rpath-Wl,/usr/lib/slurm
/usr/bin/ld: sh5util.o: in function`_extract_series_table':
/tmp/yaourt-tmp-zznu/aur-slurm-llnl/src/slurm-slurm-19-05-0-1/src/plugins/acct_gather_profile/hdf5/sh5util/sh5util.c:1079:undefined
reference to `H5PTopen'
/usr/bin/ld: sh5util.o: in function`_extract_totals':
/tmp/yaourt-tmp-zznu/aur-slurm-llnl/src/slurm-slurm-19-05-0-1/src/plugins/acct_gather_profile/hdf5/sh5util/sh5util.c:935:undefined
reference to `H5PTget_num_packets'
/usr/bin/ld:
/tmp/yaourt-tmp-zznu/aur-slurm-llnl/src/slurm-slurm-19-05-0-1/src/plugins/acct_gather_profile/hdf5/sh5util/sh5util.c:939:undefined
reference to `H5PTget_next'
/usr/bin/ld: sh5util.o: in function `_extract_series_table':
/tmp/yaourt-tmp-zznu/aur-slurm-llnl/src/slurm-slurm-19-05-0-1/src/plugins/acct_gather_profile/hdf5/sh5util/sh5util.c:1089:undefined
reference to `H5PTget_num_packets'
/usr/bin/ld:/tmp/yaourt-tmp-zznu/aur-slurm-llnl/src/slurm-slurm-19-05-0-1/src/plugins/acct_gather_profile/hdf5/sh5util/sh5util.c:1094:undefined
reference to `H5PTget_next'
/usr/bin/ld:/tmp/yaourt-tmp-zznu/aur-slurm-llnl/src/slurm-slurm-19-05-0-1/src/plugins/acct_gather_profile/hdf5/sh5util/sh5util.c:1125:undefined
reference to `H5PTclose'
/usr/bin/ld:
/tmp/yaourt-tmp-zznu/aur-slurm-llnl/src/slurm-slurm-19-05-0-1/src/plugins/acct_gather_profile/hdf5/sh5util/sh5util.c:1126:undefined
reference to `H5PTclose'
/usr/bin/ld:/tmp/yaourt-tmp-zznu/aur-slurm-llnl/src/slurm-slurm-19-05-0-1/src/plugins/acct_gather_profile/hdf5/sh5util/sh5util.c:1116:undefined
reference to `H5PTclose'
/usr/bin/ld: sh5util.o: in function `_extract_item_step':
/tmp/yaourt-tmp-zznu/aur-slurm-llnl/src/slurm-slurm-19-05-0-1/src/plugins/acct_gather_profile/hdf5/sh5util/sh5util.c:1551:undefined
reference to `H5PTopen'
/usr/bin/ld:
/tmp/yaourt-tmp-zznu/aur-slurm-llnl/src/slurm-slurm-19-05-0-1/src/plugins/acct_gather_profile/hdf5/sh5util/sh5util.c:1555:undefined
reference to `H5PTget_num_packets' /usr/bin/ld:sh5util.o: in function
`_item_analysis_uint':
/tmp/yaourt-tmp-zznu/aur-slurm-llnl/src/slurm-slurm-19-05-0-1/src/plugins/acct_gather_profile/hdf5/sh5util/sh5util.c:1275:undefined
reference to`H5PTget_next' /usr/bin/ld: sh5util.o: in
function`_extract_item_step':
/tmp/yaourt-tmp-zznu/aur-slurm-llnl/src/slurm-slurm-19-05-0-1/src/plugins/acct_gather_profile/hdf5/sh5util/sh5util.c:1590:undefined
reference to `H5PTclose' /usr/bin/ld:sh5util.o: in
function`_item_analysis_double':
/tmp/yaourt-tmp-zznu/aur-slurm-llnl/src/slurm-slurm-19-05-0-1/src/plugins/acct_gather_profile/hdf5/sh5util/sh5util.c:1376:undefined
reference to `H5PTget_next'
/usr/bin/ld: sh5util.o: in function `_extract_item_step':
/tmp/yaourt-tmp-zznu/aur-slurm-llnl/src/slurm-slurm-19-05-0-1/src/plugins/acct_gather_profile/hdf5/sh5util/sh5util.c:1605:undefined
reference to`H5PTclose' collect2: error: ld returned 1
exitstatus
make[6]: *** [Makefile:572: sh5util] Error1
make[6]: Leaving
directory'/tmp/yaourt-tmp-zznu/aur-slurm-llnl/src/slurm-slurm-19-05-0-1/src/plugins/acct_gather_profile/hdf5/sh5util'
make[5]: *** [Makefile:722:
all-recursive] Error1
make[5]:Leaving
directory'/tmp/yaourt-tmp-zznu/aur-slurm-llnl/src/slurm-slurm-19-05-0-1/src/plugins/acct_gather_profile/hdf5'
make[4]: ***
[Makefile:521: all-recursive] Error1
make[4]: Leaving
directory'/tmp/yaourt-tmp-zznu/aur-slurm-llnl/src/slurm-slurm-19-05-0-1/src/plugins/acct_gather_profile'
make[3]: ***
[Makefile:552: all-recursive] Error1
make[3]:Leaving directory
'/tmp/yaourt-tmp-zznu/aur-slurm-llnl/src/slurm-slurm-19-05-0-1/src/plugins'
make[2]: *** [Makefile:546: all-recursive] Error1
make[2]: Leaving
directory'/tmp/yaourt-tmp-zznu/aur-slurm-llnl/src/slurm-slurm-19-05-0-1/src'
make[1]:*** [Makefile:674: all-recursive] Error1
make[1]: Leaving
directory'/tmp/yaourt-tmp-zznu/aur-slurm-llnl/src/slurm-slurm-19-05-0-1'
Then, I directly download the source code from slurm official
website,./configure & make. Same error occored.
I don’t know what the problem is, howto fix it.
Thanks.
--
*****************************************************************************
* Chen, Weiguang, Ph.D
* Quantum Materials Research Center &
* College of Physics and Electronic Engineering
* No.6, Yingcai Road, Physics Building Rm#3511
* Zhengzhou Normal University, Zhengzhou, 450044 Henan, China
*
* Tel: 86-13783677861; Fax: 86-371-65502273;
* Email: chenweiguan...@gmail.com; chenweiguan...@126.com
****************************************************************************
