only create a TMPDIR with all jobs, or only if a job requests –tmp?
Erik
--
Erik Ellestad
Wynton Cluster SysAdmin
UCSF
From: slurm-users On Behalf Of Greg
Wickham
Sent: Monday, May 18, 2020 11:59 PM
To: Slurm User Community List
Subject: Re: [slurm-users] Reset TMPDIR for All Jobs
Hi Erik,
We
Hi Erik,
We use a private fork of https://github.com/hpc2n/spank-private-tmp
It has worked quite well for us - jobs (or steps) don’t share a /tmp and during
the prolog all files created for the job/step are deleted.
Users absolutely cannot see each others temporary files so there’s no issue
ev
ers] Reset TMPDIR for All Jobs
Hi Erik,
the output of task-prolog is sourced/evaluated (not really sure, how) in
the job environment.
Thus you don't have to export a variable in task-prolog, but echo the
export, e.g.
echo export TMPDIR=/scratch/$SLURM_JOB_ID
The variable will the
Admin
UCSF
-Original Message-
From: slurm-users On Behalf Of Marcus
Wagner
Sent: Tuesday, May 12, 2020 10:08 PM
To: slurm-users@lists.schedmd.com
Subject: Re: [slurm-users] Reset TMPDIR for All Jobs
Hi Erik,
the output of task-prolog is sourced/evaluated (not really sure, how) in
th
Hi Erik,
the output of task-prolog is sourced/evaluated (not really sure, how) in
the job environment.
Thus you don't have to export a variable in task-prolog, but echo the
export, e.g.
echo export TMPDIR=/scratch/$SLURM_JOB_ID
The variable will then be set in job environment.
Best
Marcu
when I run a job.
Erik
--
Erik Ellestad
Wynton Cluster SysAdmin
UCSF
*From:* slurm-users *On Behalf
Of *Roger Moye
*Sent:* Tuesday, May 12, 2020 9:12 AM
*To:* Slurm User Community List
*Subject:* Re: [slurm-users] Reset TMPDIR for All Jobs
We had issues getting TMPDIR to work as well. We
2020 9:12 AM
To: Slurm User Community List
Subject: Re: [slurm-users] Reset TMPDIR for All Jobs
We had issues getting TMPDIR to work as well. We finally did this in our
prolog:
export SLURM_TMPDIR="/tmp/slurm/${SLURM_JOB_ID}"
This works.
-Roger
From: slurm-users
mailto:s
lurm-users] Reset TMPDIR for All Jobs
I was wanted to set TMPDIR from /tmp to a per job directory I create in local
/scratch/$SLURM_JOB_ID (for example)
This bug suggests I should be able to do this in a task-prolog.
https://bugs.schedmd.com/show_bug.cgi?id=2664
However adding the following to t
I was wanted to set TMPDIR from /tmp to a per job directory I create in local
/scratch/$SLURM_JOB_ID (for example)
This bug suggests I should be able to do this in a task-prolog.
https://bugs.schedmd.com/show_bug.cgi?id=2664
However adding the following to task-prolog doesn't seem to affect the
