Here is a solution worked out by the wonderful staff from our scientific
computing support team at the Fred Hutchinson Cancer Research Center. I
really don't know how Dan did it, but the way he explained to me was that
he came across this github repository by Dirk:
https://github.com/rocker-org/r-d
Pls ignore the knitr et all missings for now, some hicc up on the check
machine caused an inconsistent setup. We will fix this shortly.
Best,
Uwe Ligges
On 01.12.2019 00:06, Dirk Eddelbuettel wrote:
On 30 November 2019 at 18:29, Mauricio Vargas wrote:
| This is the 1st time that the pre-check
On 30 November 2019 at 18:29, Mauricio Vargas wrote:
| This is the 1st time that the pre-checks shows strange errors for me. The
| results are here
|
https://win-builder.r-project.org/incoming_pretest/casen_0.1.0.9000_20191130_185019/
Following that URL to
https://win-builder.r-project.org/
Hi!
This is the 1st time that the pre-checks shows strange errors for me. The
results are here
https://win-builder.r-project.org/incoming_pretest/casen_0.1.0.9000_20191130_185019/
It says, that knitr and tidyr are not available, etc. After testing on
windows, ubuntu and mac, I only have 1 note ab
On 30 November 2019 at 19:55, Charith Karunarathna wrote:
| I am just wondering about how I can include a bioRxiv preprint as the
vignette of my R package. It's a pdf file already in bioRxiv. Could you please
let me know how I can include that file as vignette?
Sure. "Just do it" -- in the sen
Disclaimer, I'm the author: You can include a static PDF using the
R.rsp::asis vignette engine:
https://cran.r-project.org/web/packages/R.rsp/vignettes/R_packages-Static_PDF_and_HTML_vignettes.pdf
Better is if you've got the LaTeX source (with figures etc.), then use
the R.rsp::tex vignette en
Hi,
I am just wondering about how I can include a bioRxiv preprint as the vignette
of my R package. It's a pdf file already in bioRxiv. Could you please let me
know how I can include that file as vignette?
Thank you in advance!
Charith.
[[alternative HTML version deleted]]
_
Thank you for the clarification regarding roxygen2, it does look like a
confounding issue.
I will try to resolve the paths in the tex.
Thank you for the help.
On Sat, Nov 30, 2019 at 11:39 AM Iñaki Ucar wrote:
>
>
> El sáb., 30 nov. 2019 16:22, Yoni escribió:
>
>> Thank you for the clarificat
El sáb., 30 nov. 2019 16:22, Yoni escribió:
> Thank you for the clarification.
>
> I am then more confused.
>
> The CRAN version of the package (texPreview) has been unchanged since Oct
> 23, at which point it was passing the checks with no errors.
>
If your package is sitting on CRAN since then
On 30/11/2019 10:21 a.m., Yoni wrote:
Thank you for the clarification.
I am then more confused.
The CRAN version of the package (texPreview) has been unchanged since
Oct 23, at which point it was passing the checks with no errors.
Here is the CRAN mirror on GitHub with the example that is no
Thank you for the clarification.
I am then more confused.
The CRAN version of the package (texPreview) has been unchanged since Oct
23, at which point it was passing the checks with no errors.
Here is the CRAN mirror on GitHub with the example that is now erroring.
https://github.com/cran/texPr
On 30/11/2019 9:59 a.m., Yoni wrote:
Thank you for the advice.
I think that (a) is a problem to implement since the new roxygen2 is on the
CRAN systems and I can not control which version they are using to build
the package in the checks.
I don't think CRAN runs roxygen2 at all. It tests base
Thank you for the advice.
I think that (a) is a problem to implement since the new roxygen2 is on the
CRAN systems and I can not control which version they are using to build
the package in the checks.
I have gone with option (c), which is unfortunate since I will need to
change my examples twice
You could (a) install the updated roxygen from github and rebuild the man/
files ; (b) manually edit the Rd files without using roxygen ; or (c)
remove the examples until you can apply the fix.
On Sun, 1 Dec 2019 at 1:26 am, Yoni wrote:
> I received a message from CRAN yesterday stating my packa
I received a message from CRAN yesterday stating my package is erroring on
all the systems all of a sudden.
https://cran.r-project.org/web/checks/check_results_texPreview.html
After some investigation the root of the errors looks like it came from the
new release of roxygen2 (7.0.1).
https://git
On 30/11/2019 9:05 a.m., Yoni wrote:
Thank you for the advice.
I resubmitted to win-devel 20 minutes ago (0840 EST) and that error
seems to be persisting.
https://win-builder.r-project.org/Htqi1hmm4O20/00check.log
here is the link to the full DESCRIPTION file
https://raw.githubusercontent.c
Thank you for the advice.
I resubmitted to win-devel 20 minutes ago (0840 EST) and that error seems
to be persisting.
https://win-builder.r-project.org/Htqi1hmm4O20/00check.log
here is the link to the full DESCRIPTION file
https://raw.githubusercontent.com/yonicd/ripe/master/DESCRIPTION
That i
On 30/11/2019 7:02 a.m., Yoni wrote:
I have recently resubmitted a package after fixing an issue with the
license. The package passed all the checks a few days prior and on this
resubmit the winOS failed with a message that I am not sure how to resolve.
* checking package dependencies ... ERROR
I have recently resubmitted a package after fixing an issue with the
license. The package passed all the checks a few days prior and on this
resubmit the winOS failed with a message that I am not sure how to resolve.
* checking package dependencies ... ERROR
Package suggested but not available for
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