Re: [R] R-error

2023-04-14 Thread Ivan Krylov
Please keep R-help in the "Copy" list. Please compose your messages in plain text, not HTML. On Thu, 13 Apr 2023 15:59:49 +0800 (GMT+08:00) "Dezhi Wang" wrote: > This is my config.log Please don't send any more screenshots. They are needlessly large and impossible to copy text from. You could

Re: [R] R-error

2023-04-13 Thread Ivan Krylov
On Thu, 13 Apr 2023 14:53:14 +0800 (GMT+08:00) "Dezhi Wang" wrote: > [New Thread 0x7fffe660a700 (LWP 3791)] > [Thread 0x7fffe660a700 (LWP 3791) exited] > Program received signal SIGSEGV, Segmentation fault. > 0x7fffe50c0fe5 in intel_aes_gcmAAD () from > /lib64/libfreeblpriv3.so You didn't po

Re: [R] R-error

2023-04-12 Thread Ivan Krylov
On Wed, 12 Apr 2023 16:04:55 +0800 (GMT+08:00) "Dezhi Wang" wrote: > I run R 4.2.2 on CentOS-7.6. Thank you for this useful information. Could you tell us how this build of R was installed on this machine? > > install.packages('sf') > --- Please select a CRAN mirror for use in this session --

Re: [R] R] Error message "cs_lu(A) failed: near-singular A (or out of memory)"

2017-06-05 Thread Jeff Newmiller
This appears to be a case of insufficient understanding of statistics, which is not on topic for r-help. Look at how well the per-firm models would work... my guess is that some of the firms have insufficient data for useful analysis. If that is not it, consider providing a more concrete example

Re: [R] R error

2015-08-06 Thread andymac
Hi, I had a similar problem running the 32-bit version of 3.2.0 on Windows 8.1. For me the problem was user permissions. I re-ran the R program as an administrator rather than a user and it now installs packages just fine. Cheers, Andy -- View this message in context: http://r.789695.n4.nab

Re: [R] R error

2015-08-03 Thread peter dalgaard
> On 03 Aug 2015, at 18:00 , Hood, Kyle (CDC/OCOO/OCIO/ITSO) (CTR) > wrote: > > Good afternoon, > > I recently received a ticket from a customer to upgrade from 3.1.1. to 3.2.1. > After the upgrade, when he tries to install a package he receives the error > below. Could you please advise a

Re: [R] R Error: wrong result size (...), expected ... or 1 (minimal example provided)

2015-05-02 Thread William Dunlap
# invoke user defined function myFunc ( newdata=nmpr_nmproid, oridata=xanloid_set, cohort=xanloid_set$cohort_type, value= "NMPR_Cohort", xdate_to_int_time=anl_to_int_time, xflag=xanloid_set$anlflag, idate=xanloid_set$intdate,

Re: [R] R ERROR- Error in file(file, "rt") : cannot open the connection

2014-08-28 Thread Jeff Newmiller
Such problems usually come from not understanding where files really are, though sometimes odd file permissions can be the culprit. Understanding how backslashes work in R strings also sometimes causes problems, though you seem to be using forward slashes so that may not apply here. You may fin

Re: [R] R ERROR- Error in file(file, "rt") : cannot open the connection

2014-08-28 Thread Sarah Goslee
Hi, You don't show us your code, and you really should, but most likely you did not put the file where you thought you did, or there's a typo in the name. Using file.choose() may help. Also, I think it's bad practice to put user files in the R library directory. You should make a working directo

Re: [R] R Error, very odd....

2013-06-21 Thread thomas.k
I received the same error message. With me, the problem was that I had the cells in my CSV file in Excel formatted as percentages. R read them as factors and not as numeric values. After changing the cell format from percentage to general in Excel, the problem was solved. -- View this message in

Re: [R] R error: system is computationally singular when building GMM model

2013-01-13 Thread Uwe Ligges
On 13.01.2013 15:08, zoe chan wrote: Dear, I built the generalized method of moments model to estimate the sales rank in the bookstore using plm package in R. The equation is: data1.gmm <- pgmm(dynformula(lnsales_rank ~ ln_price + avg_ham_rate + avg_spam_rate + num_of_ham+ num_of_spam + ship

Re: [R] ./R: error while loading shared libraries

2013-01-10 Thread R. Michael Weylandt
I'd move this to the R-SIG-Fedora list and, in doing so, give more info about your install process: built yourself, package manager, etc. MW On Wed, Jan 9, 2013 at 7:31 PM, Adam Dahman wrote: > Hi, > > I have installed R on linux using a non root account. > > I am getting this error when trying

Re: [R] R Error, very odd....

2012-06-06 Thread Nane
I had the exact same error message, and figured out that the problem was coming from one of my cell being filled with a "Na" instead of a "NA". -- View this message in context: http://r.789695.n4.nabble.com/R-Error-very-odd-tp887545p4632492.html Sent from the R help mailing list archive at Nabbl

Re: [R] R Error: System is computationally singular

2012-05-24 Thread Nathan Svoboda
; r-help@r-project.org Subject: Re: [R] R Error: System is computationally singular Nathan, This does help, as in the first cut you provided, there was no variability in LOCS for LCOVER >= 5 and you have very few values of LOCS > 0 (you still do, relative to the scale of the total). Ha

Re: [R] R Error: System is computationally singular

2012-05-24 Thread David Winsemius
On May 24, 2012, at 3:41 PM, Nathan Svoboda wrote: Re: [R] R Error: System is computationally singular Hi David, My apologies, I am not sure if this makes a big difference in your assessment of the problem, but the results I just sent were only from a portion (1/15) of the data. The

Re: [R] R Error: System is computationally singular

2012-05-24 Thread Marc Schwartz
Nathan, This does help, as in the first cut you provided, there was no variability in LOCS for LCOVER >= 5 and you have very few values of LOCS > 0 (you still do, relative to the scale of the total). Have you tried using a zero inflated negative binomial model (dist = "negbin") rather than poi

Re: [R] R Error: System is computationally singular

2012-05-24 Thread Nathan Svoboda
, Nate Nathan Svoboda Graduate Research Assistant Mississippi State University From: David Winsemius [mailto:dwinsem...@comcast.net] Sent: Thu 5/24/2012 1:54 PM To: Nathan Svoboda Cc: r-help@r-project.org Subject: Re: [R] R Error: System is computationally

Re: [R] R Error: System is computationally singular

2012-05-24 Thread Nathan Svoboda
Thank you for your quick reply, When I run the code you provide I get this output: LCOVER LOCS 1 2 3 4 5 6 7 9 0 214507 79939 69803 778359 22932 32391 99630 8082 1 15 7 1 32 0 0 0 0 2 2 1

Re: [R] R Error: System is computationally singular

2012-05-24 Thread Nathan Svoboda
0 0 0 0 0 0 3 0 0 0 1 0 0 0 0 Nate From: David Winsemius [mailto:dwinsem...@comcast.net] Sent: Thu 5/24/2012 1:54 PM To: Nathan Svoboda Cc: r-help@r-project.org Subject: Re: [R] R Error

Re: [R] R Error: System is computationally singular

2012-05-24 Thread David Winsemius
On May 24, 2012, at 1:57 PM, Nathan Svoboda wrote: Greetings, I am trying to fit a zero-inflated Poisson model using zeroinfl() from the pscl library. I have 5 covariates (4 continuous, 1 categorical); the categorical variable has 7 levels. I have had success fitting models that contain

Re: [R] R Error/Warning Messages with library(MASS) using glm.

2012-04-14 Thread Ben Bolker
LNadler gmail.com> writes: > > Hi there, > > I have been having trouble running negative binomial regression (glm.nb) > using library MASS in R v2.15.0 on Mac OSX. > > I am running multiple models on the variables influencing the group size of > damselfish in coral reefs (count data). For t

Re: [R] R error- "more columns than column names"

2012-04-14 Thread andronikos1990
Hi all, I had the same problem and I was trying to solve with several ways. However it was the most simple thing. While I was extracting the file from Excel to a csv file I was using "," instead of "." inside my numbers (for example "9,28" instead of "9.28") and each column was seperated with a ";"

Re: [R] R error message

2012-04-12 Thread mlell08
Hi, > The code I have used is > >> summary(prefdata) >> prefdata[prefdata>5]=NA >> summary(prefdata) >> prefdata2=as.matrix(prefdata[3:22]) >> stats=paf(prefdata2) > [1] "One of your variables is a constant. Constants are disallowed as > part of could you provide some data / sample data you used fo

Re: [R] R Error : DATA to MATRIX

2012-03-26 Thread Petr PIKAL
> > On similar lines, how do I assign the position of the an occurence of a > value say 7 in a data vector to another data vector? > > > nFields > [1] 6 6 6 6 6 6 7 7 6 6 6 7 6 6 6 6 > I need the output data vector showing occurence of 7 as: > [1] 7 8 12 which(nFields==7) Regards Petr >

Re: [R] R Error : DATA to MATRIX

2012-03-26 Thread Berend Hasselman
On 26-03-2012, at 11:34, Ashish Agarwal wrote: > On similar lines, how do I assign the position of the an occurence of a > value say 7 in a data vector to another data vector? > >> nFields > [1] 6 6 6 6 6 6 7 7 6 6 6 7 6 6 6 6 > I need the output data vector showing occurence of 7 as: > [1] 7 8

Re: [R] R Error : DATA to MATRIX

2012-03-26 Thread Ashish Agarwal
On similar lines, how do I assign the position of the an occurence of a value say 7 in a data vector to another data vector? > nFields [1] 6 6 6 6 6 6 7 7 6 6 6 7 6 6 6 6 I need the output data vector showing occurence of 7 as: [1] 7 8 12 I tried following but both has errors xFields7 <- NULL fo

Re: [R] R Error : DATA to MATRIX

2012-03-25 Thread David Winsemius
On Mar 25, 2012, at 2:43 PM, ritwi...@isical.ac.in wrote: Thanks David, your suggestion works fine.btw I have another question..If I set (n,m) little bit large, say (n=20,m=10), R cannot handle the large data frame generated through "expand.grid".Is there any way to increase R-m

Re: [R] R Error : DATA to MATRIX

2012-03-25 Thread ritwik_r
Thanks David, your suggestion works fine.btw I have another question..If I set (n,m) little bit large, say (n=20,m=10), R cannot handle the large data frame generated through "expand.grid".Is there any way to increase R-memory so that I can tackle large data.frame in R ? regards ri

Re: [R] R Error : DATA to MATRIX

2012-03-23 Thread David Winsemius
On Mar 23, 2012, at 2:53 AM, ritwi...@isical.ac.in wrote: Dear Sir/Madam, I'm getting a problem with a R-code which converts a data frame to a matrix. It first generate a (m^(n-m) * m) matrix A and then regenerate another matrix B having less dimension than A which satisfy some condition.

Re: [R] R Error : DATA to MATRIX

2012-03-23 Thread Petr PIKAL
Hi See in text. > > Dear Sir/Madam, > > I'm getting a problem with a R-code which converts a data frame to a matrix. > > It first generate a (m^(n-m) * m) matrix A and then regenerate another > matrix B having less dimension than A which satisfy some condition. Now I > wish to assign each row

Re: [R] R error in make check

2012-01-11 Thread Prof Brian Ripley
You should ask this on R-devel, and tell them exactly what compilers you used. See the posting guide: this falls under 'Questions likely to prompt discussion unintelligible to non-programmers should go to to R-devel.' But yes, it is something to worry about and it looks as if your compiler

Re: [R] R error

2011-12-17 Thread Uwe Ligges
On 15.12.2011 16:42, verse123 wrote: Hi guys, I am new to R and I am bascially trying to load a library that I installed and use external data that I have. When trying to use an R package called cummeRbund (http://compbio.mit.edu/cummeRbund/), I am doing: library(cummeRbund) Loading require

Re: [R] R error function (NOT erf)

2011-11-16 Thread Rolf Turner
On 17/11/11 18:54, Sachin Abeywardana wrote: Hi all, I was wondering if it was possible to get R to throw an error if a certain condition was reached. For example: if dim(A)[2]<=1 error("Need a matrix not a vector") ?stop cheers, Rolf Turner __

Re: [R] R error- "more columns than column names"

2011-09-25 Thread boris
Hi there ... I see you had this problem last year, hope you solved it ... I had that same problem over and over again, it was due to my separator was , but . it means my keybord was set up on croatian instead of english, now works normaly ... cheers -- View this message in context: http://r.7896

Re: [R] R error using Survr function with gcmrec

2010-11-15 Thread Emily C
I've solved the condition problem, but have come across another one with the gcmrec function and was wondering if anyone could point me in the right direction again? After running the code below, I get this error message: Error in gcmrec(Survr(id, time, event) ~ var, data = dataOK, s = 1096) : N

Re: [R] R error using Survr function with gcmrec

2010-11-11 Thread Emily C
Sorry for the lack of context - I found a forum ( http://r.789695.n4.nabble.com/R-help-f789696.html) that I thought was easier to navigate and was using it for the first time. Hit the reply button, but forgot that the mailing list recipients would not see previous message in the thread. I've pasted

Re: [R] R error using Survr function with gcmrec

2010-11-11 Thread David Winsemius
On Nov 11, 2010, at 2:50 PM, David Winsemius wrote: On Nov 11, 2010, at 2:09 PM, Emily wrote: I'm having the same problem (???: from a three year-old posting for which you didn't copy any context.) and was wondering whether you ever found a solution? It gives me the error "Error in S

Re: [R] R error using Survr function with gcmrec

2010-11-11 Thread David Winsemius
On Nov 11, 2010, at 2:09 PM, Emily wrote: I'm having the same problem (???: from a three year-old posting for which you didn't copy any context.) and was wondering whether you ever found a solution? It gives me the error "Error in Survr(id, time, event) : Data doesn't match. Every sub

Re: [R] R error using Survr function with gcmrec

2010-11-11 Thread Emily
I'm having the same problem and was wondering whether you ever found a solution? It gives me the error "Error in Survr(id, time, event) : Data doesn't match. Every subject must have a censored time" even though all my subjects are right-censored, and to be sure, I've even used the addCenTime funct

Re: [R] R error- "more columns than column names"

2010-02-24 Thread Tal Galili
Euphoria, Also just consider re-saving the file as a comma separated file (or another one that fits) Contact Details:--- Contact me: tal.gal...@gmail.com | 972-52-7275845 Read me: www.talgalili.com (Hebrew) | www.biostatistics.

Re: [R] R error- "more columns than column names"

2010-02-24 Thread David Winsemius
On Feb 24, 2010, at 7:07 PM, Euphoria wrote: Thanks to all who posted. After trying all of the above-listed options - the error is still popping up, but here is some progress: 1) I can read in the file just fine when I use the read.table statement and specify it as a tab delimited file

Re: [R] R error- "more columns than column names"

2010-02-24 Thread Euphoria
Thanks to all who posted. After trying all of the above-listed options - the error is still popping up, but here is some progress: 1) I can read in the file just fine when I use the read.table statement and specify it as a tab delimited file using the code: two <- read.table("Z:/CCFPhenotypesTAB

Re: [R] R error- "more columns than column names"

2010-02-24 Thread Tal Galili
That makes me wonder, if one could devise a function to check for common reasons for this error and report them. What do you think Erik (and other R users) ? I mean, just going through the R-help list in search of this error - could yield many common reasons to check for... Tal C

Re: [R] R error- "more columns than column names"

2010-02-24 Thread Erik Iverson
I had a comment character "#" in my header names earlier today that threw this error. Euphoria wrote: Hi all! I am desperately trying to figure out the solution to this error, but nothing as of yet is working. As noted in an earlier post I am using GenABEL. In an attempt to read in the phe

Re: [R] R error- "more columns than column names"

2010-02-24 Thread Don MacQueen
From the help page for the read.delim() function, under "See Also", suggests: 'count.fields' can be useful to determine problems with reading files which result in reports of incorrect record lengths. This is sometimes helpful. -Don At 1:14 PM -0800 2/24/10, Euphoria wrote: Hi all!

Re: [R] R error- "more columns than column names"

2010-02-24 Thread Tal Galili
I usually found this problem to be connected to spaces in the column names. Or, a wrong "sep" argument (for example "," instead of "\t" and the like) Let us know if it helped. Cheers, Tal Contact Details:--- Contact me: tal.ga

Re: [R] R Error, very odd....

2009-05-11 Thread Don MacQueen
At 12:37 AM -0700 5/11/09, Katie2009 wrote: hi dieter, the method i'm using is in excel, copying the data, then in r w<-read.delim("clipboard") w<-as.data.frame(w) i've been doing a bit more fiddling, and have identified the 'class' of the column that i'm having trouble with, is classifi

Re: [R] R Error, very odd....

2009-05-11 Thread Katie2009
hi dieter, the method i'm using is in excel, copying the data, then in r > w<-read.delim("clipboard") > w<-as.data.frame(w) i've been doing a bit more fiddling, and have identified the 'class' of the column that i'm having trouble with, is classified as 'factor' whilst the rest are numeric.

Re: [R] R Error, very odd....

2009-05-11 Thread Dieter Menne
Katie2009 wrote: > > hi dieter, > > the method i'm using is in excel, copying the data, then in r > >> w<-read.delim("clipboard") >> w<-as.data.frame(w) > > i've been doing a bit more fiddling, and have identified the 'class' of > the column that i'm having trouble with, is classified as '

Re: [R] R Error, very odd....

2009-05-11 Thread Dieter Menne
Katie2009 wrote: > > I'm trying to analyse some excel data in R. The problem is that when i > input the data with the first column as absolute values, everything works > fine, can analyse as normal. When I leave the first column unchanged to > import negative numbers as well I get: > > Error

Re: [R] R Error

2008-11-21 Thread Peter Dalgaard
Dieter Menne wrote: > > >>> Error in S[index] = S[index - 1] + (dSi - dSo - SC) * dt : >>> nothing to replace with >>> > > Peter Dalgaard wrote: >> ...that her R version is from before September 2008. > > Just curious which item in NEWS this comment refers to. Something changed > in [] ? No

Re: [R] R Error

2008-11-21 Thread Dieter Menne
>> Error in S[index] = S[index - 1] + (dSi - dSo - SC) * dt : >> nothing to replace with >> Peter Dalgaard wrote: > ...that her R version is from before September 2008. Just curious which item in NEWS this comment refers to. Something changed in [] ? Dieter -- View this message in context

Re: [R] R Error

2008-11-21 Thread Peter Dalgaard
Rolf Turner wrote: On 21/11/2008, at 10:13 AM, Steffy, Elizabeth A. wrote: I got this error for this equation and i'm not sure what it means or how to fix it: Error in S[index] = S[index - 1] + (dSi - dSo - SC) * dt : nothing to replace with Does anyone know how to fix this? No. PL

Re: [R] R Error

2008-11-20 Thread Rolf Turner
On 21/11/2008, at 10:13 AM, Steffy, Elizabeth A. wrote: I got this error for this equation and i'm not sure what it means or how to fix it: Error in S[index] = S[index - 1] + (dSi - dSo - SC) * dt : nothing to replace with Does anyone know how to fix this? No. PLEASE do read th

Re: [R] R error: Not able to launch R 2.6.2

2008-03-10 Thread Petr PIKAL
Hi Sometimes also helps to start R from elsewhere, load a package which was used in analysis and open .Rdata file. [EMAIL PROTECTED] napsal dne 09.03.2008 17:45:06: > Yes. I found one that says to change the extension to RData. Where is the > folder located? I tried looking at the R folder but

Re: [R] R error: Not able to launch R 2.6.2

2008-03-09 Thread Christophe Lo
Yes. I found one that says to change the extension to RData. Where is the folder located? I tried looking at the R folder but couldn't find it. On 3/9/08, Charilaos Skiadas <[EMAIL PROTECTED]> wrote: > > On Mar 9, 2008, at 12:12 PM, Keizer_71 wrote: > > > > > Hi Everyone, > > > > I am having troub

Re: [R] R error: Not able to launch R 2.6.2

2008-03-09 Thread Duncan Murdoch
On 09/03/2008 12:12 PM, Keizer_71 wrote: > Hi Everyone, > > I am having trouble using R. I am not sure what happen but when i start R, i > am getting error message > > "Fatal Error: Unable to restore saved data in .RData. > > -I restarted my pc but still same error > -I reinstall R but still sa

Re: [R] R error: Not able to launch R 2.6.2

2008-03-09 Thread Charilaos Skiadas
On Mar 9, 2008, at 12:12 PM, Keizer_71 wrote: > > Hi Everyone, > > I am having trouble using R. I am not sure what happen but when i > start R, i > am getting error message > > "Fatal Error: Unable to restore saved data in .RData. Just google for "unable to restore saved data in .RData. ", and