Euphoria,
Also just consider re-saving the file as a comma separated file (or another
one that fits)
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On Thu, Feb 25, 2010 at 2:18 AM, David Winsemius <dwinsem...@comcast.net>wrote:
>
> On Feb 24, 2010, at 7:07 PM, Euphoria wrote:
>
>
>> Thanks to all who posted. After trying all of the above-listed options -
>> the
>> error is still popping up, but here is some progress:
>>
>> 1) I can read in the file just fine when I use the read.table statement
>> and
>> specify it as a tab delimited file using the code:
>>
>> two <- read.table("Z:/CCFPhenotypesTAB.dat", head=TRUE, sep="\t")
>>
>> But, my issue is with GenABEL and the load.gwaa.data statement - I need
>> the
>> file to be read into load.gwaa.data - unless there is another way to read
>> in
>> the phenotype file in GenABEL.
>>
>> Code:
>> mix <- load.gwaa.data (phe = "Z:/CCFPhenotypesTAB.dat", gen =
>> "pedmap-0.raw")
>>
>
> The first line of that function body is this:
>
> dta <- read.table(phenofile, header = TRUE, as.is = TRUE)
>
> Notice that no provision was made for a supplied sep argument. Hack it so
> that it recognizes tab characters. Just changing hte extension designation
> will not allter the fact that iwas not designed to work with "tab" as a
> separator.
>
> Perhaps this as a replacement:
>
> dta <- read.table(phenofile, header = TRUE, as.is = TRUE, sep="\t")
>
> Or give the argument list a set of ellipses , ...) and the above line some
> ellipses to receive the argument.
>
>
> --
> David.
>
>
>
>>
>> 2) Also, it might help if I explained how I came about the .dat file. It
>> was originally created in excel as a .xlsx file, which I converted to a
>> tab
>> delimited .txt file. I just changed the .txt extension to .dat for it to
>> be
>> read in R for the GenABEL package.
>>
>> --
>> View this message in context:
>> http://n4.nabble.com/R-error-more-columns-than-column-names-tp1568052p1568313.html
>> Sent from the R help mailing list archive at Nabble.com.
>>
>> ______________________________________________
>> R-help@r-project.org mailing list
>> https://stat.ethz.ch/mailman/listinfo/r-help
>> PLEASE do read the posting guide
>> http://www.R-project.org/posting-guide.html
>> and provide commented, minimal, self-contained, reproducible code.
>>
>
> David Winsemius, MD
> Heritage Laboratories
> West Hartford, CT
>
>
> ______________________________________________
> R-help@r-project.org mailing list
> https://stat.ethz.ch/mailman/listinfo/r-help
> PLEASE do read the posting guide
> http://www.R-project.org/posting-guide.html
> and provide commented, minimal, self-contained, reproducible code.
>
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