Dear Ana
That looks like something is hard coded in manhattan(). The simplest
thing might be to contact the maintainer of the package and ask. You can
make a copy of manhattan or textxy and modify them but I think the
maintainer is the simplest course of action.
Michael
On 20/05/2020 16:10,
HI Michael,
Thank you so much!
That worked!!! Now I am just trying to increase the size of text of
SNP and GENE on plot
I tried this:
a$newname <- paste(a$SNP,"\n", a$GENE)
manhattan(a, chr="CHR", bp="BP", snp="newname", p="P",cex =
0.5,annotatePval = 0.0001)
but I am getting this error:
Error
a$newname <- paste(a$SNP, a$GENE)
manhattan(a, chr="CHR", bp="BP", snp="newname", p="P",annotatePval = 0.0001)
However note that I do not use manhattan() so you may need to alter the
parameters as I am assuming a is where it finds the remaining parameters.
You may also need to play with the se
Dear Ana
Perhaps paste together SNP and GENE using paste() and then supply that
as the snp parameter.
Michael
On 19/05/2020 17:12, Ana Marija wrote:
Hello,
I am making manhattan plot with:
library(qqman)
manhattan(a, chr="CHR", bp="BP", snp="SNP", p="P",annotatePval = 0.0001)
and I would l
Hi Michael,
can you please send me code how that would be done?
Thanks
Ana
On Tue, May 19, 2020 at 11:18 AM Michael Dewey wrote:
>
> Dear Ana
>
> Perhaps paste together SNP and GENE using paste() and then supply that
> as the snp parameter.
>
> Michael
>
> On 19/05/2020 17:12, Ana Marija wrote:
Hello,
I am making manhattan plot with:
library(qqman)
manhattan(a, chr="CHR", bp="BP", snp="SNP", p="P",annotatePval = 0.0001)
and I would like to annotate these two SNPs which are above the
threshold so that they have GENE name beside them:
> a[a$SNP=="rs4081570",]
SNPP CHR
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