Hello,
I am making manhattan plot with:
library(qqman)
manhattan(a, chr="CHR", bp="BP", snp="SNP", p="P",annotatePval = 0.0001)
and I would like to annotate these two SNPs which are above the
threshold so that they have GENE name beside them:
> a[a$SNP=="rs4081570",]
SNP P CHR BP GENE
1 rs4081570 6.564447e-05 19 15918647 UCA1
> a[a$SNP=="rs11867934",]
SNP P CHR BP GENE
1021 rs11867934 6.738066e-06 17 16933404 FLCN
Right now my plot only has SNP name for those 2, how to add GENE names
(FLCN and UCA1 as well)
Please advise
Ana
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