[R] Help with finding tutors for Linux, R, Perl, Python MATLAB and/or Cytoscape for yeast microarray analysis, next generation sequencing and constructing gene interaction networks

​ Help with finding tutors for Linux, R, Perl, Python MATLAB and/or Cytoscape for yeast microarray analysis, next generation sequencing and constructing gene interaction networks Hi I am a visually impaired bioinformatics graduate student using microarray data for my master’s thesis aimed

Re: [R] perl

On Friday, November 28, 2014, Noha Osman wrote: > Hi Folks > > > Iam a new user in perl and I have two questions .Hopefully I get any help Seems unlikely that you'll get perl help on the R help list. Best try again in a more appropriate forum. > > > my data like that > > > Chr1TAIR10 ch

[R] perl

Hi Folks Iam a new user in perl and I have two questions .Hopefully I get any help my data like that Chr1TAIR10 chromosome 1 30427671. . . ID=Chr1;Name=Chr1 Chr1TAIR10 gene36315899. + . ID=AT1G01010;Note=protein_co

[R] PERL client example for RServ

Does anyone have a PERL client example that sends a command to a running RServ instance and displays the output on the client side? Regards Lokesh -- View this message in context: http://r.789695.n4.nabble.com/PERL-client-example-for-RServ-tp3823032p3823032.html Sent from the R help mailing lis

Re: [R] Perl "cut" equivalent in R

On 10/12/2010 12:05 PM, William Dunlap wrote: > -Original Message- > From: r-help-boun...@r-project.org > [mailto:r-help-boun...@r-project.org] On Behalf Of Martin Maechler > Sent: Friday, December 10, 2010 8:54 AM > To: Steve Lianoglou > Cc: r-help@r-project.org

Re: [R] Perl "cut" equivalent in R

> -Original Message- > From: r-help-boun...@r-project.org > [mailto:r-help-boun...@r-project.org] On Behalf Of Martin Maechler > Sent: Friday, December 10, 2010 8:54 AM > To: Steve Lianoglou > Cc: r-help@r-project.org > Subject: Re: [R] Perl "cut" equivalen

Re: [R] Perl "cut" equivalent in R

> "SL" == Steve Lianoglou > on Mon, 6 Dec 2010 14:21:59 -0500 writes: >>> if(FALSE) { stuff your don't want executed          } >>> >> > Switching a block of code off/on with editing a single >> character may be done using 0/1 instead of FALSE/TRUE. SL> Or even

Re: [R] Perl "cut" equivalent in R

>> if(FALSE) { >> stuff your don't want executed >>          } >> > > Switching a block of code off/on with editing a single character > may be done using 0/1 instead of FALSE/TRUE. Or even F/T -- Steve Lianoglou Graduate Student: Computational Systems Biology  | Memorial Sloan-Kettering Cancer

Re: [R] Perl "cut" equivalent in R

On Wed, Dec 01, 2010 at 07:12:37PM -0500, David Winsemius wrote: ... > One of the workarounds... the one I remember anyway... has been to > insert: > > if(FALSE) { > stuff your don't want executed > } > Switching a block of code off/on with editing a single character may be done usin

Re: [R] Perl "cut" equivalent in R

On 2010-12-01 15:59, Jonathan Flowers wrote: Thanks Sarah, you are right. In perl, "cut" serves the function of eliminating a block of code from being executed in a script. When "=cut" is placed above and below the code that you do not wish to execute then the interpreter will skip over the co

Re: [R] Perl "cut" equivalent in R

On Dec 1, 2010, at 6:59 PM, Jonathan Flowers wrote: Thanks Sarah, you are right. In perl, "cut" serves the function of eliminating a block of code from being executed in a script. When "=cut" is placed above and below the code that you do not wish to execute then the interpreter will ski

Re: [R] Perl "cut" equivalent in R

Thanks Sarah, you are right. In perl, "cut" serves the function of eliminating a block of code from being executed in a script. When "=cut" is placed above and below the code that you do not wish to execute then the interpreter will skip over the code. There are lots of ways to solve the proble

Re: [R] Perl "cut" equivalent in R

It would help if you told us what you wanted this function to do, and provided an example. Not everyone speaks Perl. Sarah On Wed, Dec 1, 2010 at 6:10 PM, Jonathan Flowers wrote: > Does anyone know of a command in R that is equivalent to the =cut function > in Perl? > > Thanks. > > Jonathan > -

[R] Perl "cut" equivalent in R

Does anyone know of a command in R that is equivalent to the =cut function in Perl? Thanks. Jonathan [[alternative HTML version deleted]] __ R-help@r-project.org mailing list https://stat.ethz.ch/mailman/listinfo/r-help PLEASE do read the post

[R] Perl error - Can't locate R/Rdconv.pm in @INC

Dear list, I've a package, myPkg, which was developed on R v 2.6.1. I have installed R v2.9.2 from source, with a shared library and tcktk support. The package, myPkg, depends on RSPerl, and imports it in its NAMESPACE. I've downloaded and installed RSPerl using command: >R CMD INSTALL -c --con

Re: [R] perl functions in R enviroment

1. You can use the system() function for a less granular interface. See read.xls and xls2csv in the gdata package for an example of calling perl from R using system(). 2. If you do need a more granular interface you could try switching to C (which is even faster than perl) or if you want to use a

[R] perl functions in R enviroment

dear all, I am trying to implement some perl scripting in R to improve the performance of some scripts. I found RSPerl library, but it seems to be quite tricky to import variables. this is a simple example. is there any simpler way to do it? furthermore is there any other available resource to in

Re: [R] Perl-R bridge

ANJAN PURKAYASTHA wrote: > > Hi, > I'm planning to access R from my perl scripts. > The only noteworthy bridge seems to be > Statistics-R-0.03. > Would anyone like to share their experience with this Perl-R bridge? Irrespectiv

Re: [R] Perl-R bridge

you could take a look at this: http://www.omegahat.org/RSPerl/ but I'm not sure how well maintained it is currently. adam On 19 Jan 2009, at 02:00, ANJAN PURKAYASTHA wrote: Hi, I'm planning to access R from my perl scripts. The only noteworthy bridge seems to be Statistics-R-0.03

Re: [R] Perl-R bridge

you could take a look at this: http://www.omegahat.org/RSPerl/ but I'm not sure how well maintained it is currently. adam On 19 Jan 2009, at 02:00, ANJAN PURKAYASTHA wrote: Hi, I'm planning to access R from my perl scripts. The only noteworthy bridge seems to be Statistics-R-0.03

[R] Perl-R bridge

Hi, I'm planning to access R from my perl scripts. The only noteworthy bridge seems to be Statistics-R-0.03. Would anyone like to share their experience with this Perl-R bridge? I'd like to install it in a Mac OS X. Suggestions on

Re: [R] perl expression question

If this is a path name, then 'basename' will work for you: > stock<-"/opt/limsrv/mark/research/equity/projects/testDL/stock_data/fhdb/US/BLC.NYSE" > basename(stock) [1] "BLC.NYSE" > On Mon, Sep 22, 2008 at 8:29 PM, <[EMAIL PROTECTED]> wrote: > If I have the string below. does someone know a reg

Re: [R] perl expression question

By the way, although a regular expression solutions was asked for if one expands that to any solution then R does have a function specifically for this case: > basename(stock) [1] "BLC.NYSE" On Mon, Sep 22, 2008 at 9:23 PM, Gabor Grothendieck <[EMAIL PROTECTED]> wrote: > Try this: > >> sub(".*/",

Re: [R] perl expression question

Try this: > sub(".*/", "", stock) [1] "BLC.NYSE" On Mon, Sep 22, 2008 at 8:29 PM, <[EMAIL PROTECTED]> wrote: > If I have the string below. does someone know a regular expression to just > get the "BLC.NYSE". I bought the O'Reilley > book and read it when I can and I study the solutions on the l

Re: [R] perl expression question

Hi Mark, do you mean the regex to get the portion of the address after the final slash? Something like gsub(".*/([^/]*$)", "\\1", stock, fixed=FALSE) Cheers Andrew On Mon, Sep 22, 2008 at 07:29:25PM -0500, [EMAIL PROTECTED] wrote: > If I have the string below. does someone know a regular expr

Re: [R] perl expression question

Hi Mark, stock<-"/opt/limsrv/mark/research/equity/projects/testDL/stock_data/fhdb/US/BLC.NYSE" > gsub(".*/([^/]+)$", "\\1",stock) [1] "BLC.NYSE" --- On Tue, 23/9/08, [EMAIL PROTECTED] <[EMAIL PROTECTED]> wrote: > From: [EMAIL PROTEC

[R] perl expression question

If I have the string below. does someone know a regular expression to just get the "BLC.NYSE". I bought the O'Reilley book and read it when I can and I study the solutions on the list but I'm still not self sufficient with these things. Thanks. stock<-"/opt/limsrv/mark/research/equity/project

Re: [R] perl expression question

It can be done like this with strapply in gsubfn. See home page at http://gsubfn.googlecode.com . strapply is like apply except the string to be operated on replaces the matrix and the regexp replaces the margin number and the function can be omitted if you are only returning one item.Its like

Re: [R] perl expression question

Will this do it: > fileName<-"Agg.20.20.20-all-01" > sub(".*\\.(\\d+\\.\\d+\\.\\d+).*", "\\1", fileName, perl=TRUE) [1] "20.20.20" > sub(".*-([^-]+)-.*", "\\1", fileName, perl=TRUE) [1] "all" > On Tue, Aug 12, 2008 at 4:18 PM, <[EMAIL PROTECTED]> wrote: > I have a string such as > > fileName<-"

[R] perl expression question

I have a string such as fileName<-"Agg.20.20.20-all-01". All I want to do is pull the "20.20.20" and the "all" as strings. Obviously, they aren't always those values. The "20.20.20" can be "30.30.30" but it's always after the . which is next to the second g in Agg and it's always the same len

Re: [R] perl module for R

-BEGIN PGP SIGNED MESSAGE- Hash: SHA1 [EMAIL PROTECTED] wrote: > This looks a bit like it only works for unix and maybe linux. is that > right? I'm using windows so if it is right I'll need another solution. > The latest version of the RSPerl code allows one to embed Perl within R on

Re: [R] perl module for R

This looks a bit like it only works for unix and maybe linux. is that right? I'm using windows so if it is right I'll need another solution. Stephen > http://www.omegahat.org/RSPerl/ > > -- > Andrew J Perrin - andrew_perrin (at

Re: [R] perl module for R

-BEGIN PGP SIGNED MESSAGE- Hash: SHA1 Lux Zhang wrote: > On 06/11/2007, Adrian Dusa <[EMAIL PROTECTED]> wrote: >> On Monday 05 November 2007, you wrote: >>> On 04/11/2007, Andrew Perrin <[EMAIL PROTECTED]> wrote: http://www.omegahat.org/RSPerl/

[R] perl module for R

On 06/11/2007, Adrian Dusa <[EMAIL PROTECTED]> wrote: > > On Monday 05 November 2007, you wrote: > > On 04/11/2007, Andrew Perrin <[EMAIL PROTECTED]> wrote: > > > http://www.omegahat.org/RSPerl/ > > > > > > -- > > > Andrew J Perrin

Re: [R] perl module for R

On 04/11/2007, Andrew Perrin <[EMAIL PROTECTED]> wrote: > > http://www.omegahat.org/RSPerl/ > > -- > Andrew J Perrin - andrew_perrin (at) unc.edu - > http://perrin.socsci.unc.edu > Associate Professor of Sociology; Book Review Edit

Re: [R] perl module for R

http://www.omegahat.org/RSPerl/ -- Andrew J Perrin - andrew_perrin (at) unc.edu - http://perrin.socsci.unc.edu Associate Professor of Sociology; Book Review Editor, _Social Forces_ University of North Carolina - CB#3210, Chapel Hi

[R] perl module for R

Hi can anyone recommend a perl module that I can use to run R? Stephen __ R-help@r-project.org mailing list https://stat.ethz.ch/mailman/listinfo/r-help PLEASE do read the posting guide http://www.R-project.org/posting-guide.html and provide commented,