On Friday, November 28, 2014, Noha Osman <nmo_...@usc.edu> wrote: > Hi Folks > > > Iam a new user in perl and I have two questions .Hopefully I get any help
Seems unlikely that you'll get perl help on the R help list. Best try again in a more appropriate forum. > > > my data like that > > > Chr1 TAIR10 chromosome 1 30427671 . . . > ID=Chr1;Name=Chr1 > Chr1 TAIR10 gene 3631 5899 . + . > ID=AT1G01010;Note=protein_coding_gene;Name=AT1G01010 > Chr1 TAIR10 mRNA 3631 5899 . + . > ID=AT1G01010.1;Parent=AT1G01010;Name=AT1G01010.1;Index=1 > Chr1 TAIR10 protein 3760 5630 . + . > ID=AT1G01010.1-Protein;Name=AT1G01010.1;Derives_from=AT1G01010.1 > Chr1 TAIR10 exon 3631 3913 . + . > Parent=AT1G01010.1 > Chr1 TAIR10 five_prime_UTR 3631 3759 . + . > Parent=AT1G01010.1 > Chr1 TAIR10 CDS 3760 3913 . + 0 > Parent=AT1G01010.1,AT1G01010.1-Protein; > Chr1 TAIR10 exon 3996 4276 . + . > Parent=AT1G01010.1 > Chr1 TAIR10 CDS 3996 4276 . + 2 > Parent=AT1G01010.1,AT1G01010.1-Protein; > Chr1 TAIR10 exon 4486 4605 . + . > Parent=AT1G01010.1 > Chr1 TAIR10 CDS 4486 4605 . + 0 > Parent=AT1G01010.1,AT1G01010.1-Protein; > Chr1 TAIR10 exon 4706 5095 . + . > Parent=AT1G01010.1 > Chr1 TAIR10 CDS 4706 5095 . + 0 > Parent=AT1G01010.1,AT1G01010.1-Protein; > Chr1 TAIR10 exon 5174 5326 . + . > Parent=AT1G01010.1 > Chr1 TAIR10 CDS 5174 5326 . + 0 > Parent=AT1G01010.1,AT1G01010.1-Protein; > > I need to use Hash to answer these questions > > 1: output a file that has Gene name in column 1 and the number of exons it > contains in column 2 > > 2: output a file that list all the transcripts/mRNA in column 2 and the > gene it is found in column 1 > > > > [[alternative HTML version deleted]] > > ______________________________________________ > R-help@r-project.org <javascript:;> mailing list > https://stat.ethz.ch/mailman/listinfo/r-help > PLEASE do read the posting guide > http://www.R-project.org/posting-guide.html > and provide commented, minimal, self-contained, reproducible code. > -- Sarah Goslee http://www.stringpage.com http://www.sarahgoslee.com http://www.functionaldiversity.org [[alternative HTML version deleted]] ______________________________________________ R-help@r-project.org mailing list https://stat.ethz.ch/mailman/listinfo/r-help PLEASE do read the posting guide http://www.R-project.org/posting-guide.html and provide commented, minimal, self-contained, reproducible code.
