via the binaries. Thanks
again, best wishes, James
From: stephen sefick
Sent: Wednesday 21 February 2024 12:25
To: James Powell
Cc: r-help@r-project.org
Subject: Re: [R] Network issue
CAUTION: This email originated from outside of the organisation. Do not click
links or open attachments
(name, "wb") : cannot open the connection
>
>I have tried going into the archive of these packages and installing older
>versions, but no luck with those either.
>I hope you can help. Best wishes, James
>
>
>From: stephen sefick
>Sent: Tuesday 20 February 2024 19:4
u can help. Best wishes, James
From: stephen sefick
Sent: Tuesday 20 February 2024 19:43
To: James Powell
Cc: r-help@r-project.org
Subject: Re: [R] Network issue
CAUTION: This email originated from outside of the organisation. Do not click
links or open attachments unless you recognise the s
Hi Ivan,
Thanks very much for your response, I'll definitely give that a go. Best
wishes, James
-Original Message-
From: Ivan Krylov
Sent: Wednesday 21 February 2024 10:38
To: James Powell
Cc: r-help@r-project.org
Subject: Re: [R] Network issue
CAUTION: This email originated
В Wed, 21 Feb 2024 06:09:51 +
James Powell пишет:
> This was working fine until yesterday when I had error messages
> trying to install some packages. See enclosed “S2” for example. It
> looks like it is trying to download a file as part of the
> installation, but of course can’t.
Since you
urls. Thanks again for your
help. Regards, James
From: stephen sefick
Sent: Wednesday 21 February 2024 00:04
To: James Powell
Cc: r-help@r-project.org
Subject: Re: [R] Network issue
CAUTION: This email originated from outside of the organisation. Do not click
links or open attachments unless
Hallo James
Just a wild guess, are your problems connected with change of default
download method from wininet to libcurl?
Cheers
Petr
út 20. 2. 2024 v 18:24 odesílatel James Powell napsal:
>
[[alternative HTML version deleted]]
__
R-help@r
... and if the problem is networking, then you will likely need help from
someone who knows your local configuration. Employers often do things that
limit what R can do, and none of us are likely to know about those things.
On February 20, 2024 11:43:24 AM PST, stephen sefick wrote:
>Maybe I mi
Maybe I missed the rest of the post? You are more likely to get help with
your problems if you create a minimal reproducible example.
Kindest regards,
Stephen Sefick
On Tue, Feb 20, 2024, 12:24 James Powell wrote:
>
[[alternative HTML version deleted]]
R version 4.3.1 (2023-06-16 ucrt) -- "Beagle Scouts"
Copyright (C) 2023 The R Foundation for Statistical Computing
Platform: x86_64-w64-mingw32/x64 (64-bit)
R is free software and comes with ABSOLUTELY NO WARRANTY.
You are welcome to redistribute it under certain conditions.
Type 'license()' or '
No "clear guidelines" ??!!
A google search on "network meta-analysis" produced a whole bunch of hits,
including this:
https://www.ncbi.nlm.nih.gov/pubmed/23674332
While "clear" is undefined (what is clear to you may be opaque to me), it
is hard for me to believe that none of the search results s
Hi Sherief,
First thing is your data set did not make it If it is not too large,
perhaps you could send the output of "dput" in the body of the message
or send a CSV file with the extension changed to ".txt". If the data
set is very large, perhaps you could send a subset as described above.
Jim
> On Sep 19, 2017, at 6:18 PM, Sherief Ghozy via R-help
> wrote:
>
> Greetings. I hope my message finds you well.
>
> I know this question may be silly for some experts like you but it's a very
> important matter for me so, sorry for that.
>
> I was trying to make a network meta-analysis usi
Greetings. I hope my message finds you well.
I know this question may be silly for some experts like you but it's a very
important matter for me so, sorry for that.
I was trying to make a network meta-analysis using R for the attached data set
which shows the association between breast feeding
Shiny could probably work, but https://www.opencpu.org/ is probably a
better fit.
Best,
Ista
On Wed, Apr 26, 2017 at 9:55 AM, Jake Stone wrote:
> I am a java programmer, quite new to R.
>
> I am familiar with rJava/JRI, but would prefer a distributed networked
> architecture for my systems.
>
>
I am a java programmer, quite new to R.
I am familiar with rJava/JRI, but would prefer a distributed networked
architecture for my systems.
TASK:
- Java runs an NLP analysis of a text. It then sends an array (vector)
of variables to R
- R predicts the class of the input vector based on
1. Describe better the distributions of obs to time series; i.e., describe
clearly the time series and obs with math'l notation briefly.
2. Use Conditional G-causality and/or partial G-causality, you can exceed
"the limit of max. number of variables = 11" in a VAR structure.
3. You can use R's FI
Have you searched?!
"Granger causality" at rseek.org brought up what appeared to be many
relevant hits.
-- Bert
Bert Gunter
"The trouble with having an open mind is that people keep coming along
and sticking things into it."
-- Opus (aka Berkeley Breathed in his "Bloom County" comic strip )
Hi Everyone,
We have a question about whether one can to do a particular type of Granger
Causality (GC) network validation in R. We hope you'll agree it's an
interesting problem and that someone's figured out how to solve it.
We have a cellular network with n nodes (proteins). We have two diff
Hi,
On Mon, May 2, 2016 at 8:36 AM, Kushank Chhabra
wrote:
> Hi,
>
>
>
> I am trying to plot a network diagram of around 1500 component (as nodes)
> and many connections (as edges) within them.
> I tried igraph package, however unable to create a layout where there is no
> overlap of nodes or ed
Hi,
I am trying to plot a network diagram of around 1500 component (as nodes)
and many connections (as edges) within them.
I tried igraph package, however unable to create a layout where there is no
overlap of nodes or edges.
More or less tried all the things mentioned in this link -
http
Hello everybody. I am not sure if I am in the right forum for my question. If
so, please let me know so I can go somewhere else! Thanks. Currently I am
trying to familiarize myself with R. I am trying to plot some sort of Network
graph (think of migration maps). Basically, I'd like to have an in
Hello,
I am building a network using a distance matrix with the package 'network'
I want to create a network with cities as vertices and with the length of
the edges between them that reflects their distances.
How can I ? All I tried did not work
I tried the following code but the result is a g
> To: r-help@r-project.org
> Subject: [R] Network analysis
>
>
>
> Hi,
>
> I am trying to do network analysis for my data-set but facing few
> difficulties. Would be very grateful if could get some help from anyone.
>
> My dataset has 5 columns and 110 rows
Hi,
I am trying to do network analysis for my data-set but facing few difficulties.
Would be very grateful if could get some help from anyone.
My dataset has 5 columns and 110 rows and I am trying to build link which rows
are more likely to be connected to the columns. I want to use Jaccard
hi. i've been very happy using multicore functionality, but felt the
need to get more horsepower, so have been trying to use parallel (after
realizing it is the "new snow") to access an amazon EC2 cluster, but
have had no success.
in the internet today, if machine M (the master) can open a connec
Hello,
It's more or less the same it was with vertices. If the edge labels
represent weights, then create an appropriate attribute and set the
labels' values to that attribute's values:
E(g)$weight <- something # keep the weights in a separate attribute
E(g)$label <- E(g)$weight # set w
Is it possible to write a numbers of link next to lines of the network?
For exmple, I have 3 trials that have studied two drugs in network.
So, now it seems all links are of same weight.
2012/7/27 Vlatka Matkovic Puljic
> Thank you!
>
> It works fine now! :)
>
> 2012/7/27 Rui Barradas
>
>
Thank you!
It works fine now! :)
2012/7/27 Rui Barradas
> Hello,
>
> As for the directed = FALSE, it works with me:
>
> g <- graph(given, directed = FALSE)
>
> As for the label, it's easy. Create an attribute 'name' and then set the
> label to that attribute. For instance, using the alphabet's
Hello,
As for the directed = FALSE, it works with me:
g <- graph(given, directed = FALSE)
As for the label, it's easy. Create an attribute 'name' and then set the
label to that attribute. For instance, using the alphabet's letters,
first uppercase.
V(g)$name <- c(LETTERS, letters)[V(g)] #
Thank you Rui.
With matrix works better. I got plot I have expected to have.
I want to be undirected. But
directed = FALSE
or
as.undirected(graph)
are not working? Where I'd gone wrong?
Shouldn't it be possible to add names instead of numbers of nods with
vertex.label= ?
2012/7/26 Rui Barr
Hello,
I don't see the problem.
given <- scan(text="
15 2
10 4
10 4
10 4
13 4
13 4
15 4
18 4
11 5
2 6
7 6
7 6
7 6
12 6
15 6
15 6
19 6
22 6
24 6
6 7
5 12
5 12
7 12
11 12
13 12
13 12
13 12
13 12
16 12
17 12
23 12
23 12
23 12
23 12
6 13
12 13
6 14
6 15
9 15
12 15
13 15
17 16
16 17
1 18
12 18
23 18
**Hi,
I wanted to create a network of drugs that are being studied together.
So, I created a file as a graph.
But plot of my network is not corect!
It looks like to me that something else is lying behind this network links
created.
Could someone help me with this?
Thanx!
a<-read.graph(file=file
Hi,
I wanted to create a network of drugs that are being studied together.
So, I created a file as a graph.
But plot of my network is not corect!
It looks like to me that something else is lying behind this network links
created.
Could someone help me with this?
Thanx!
a<-read.graph(file=file.c
Dear Sir/ Madam,
I was wondering if someone could help me. I am trying to calculate
closeness centrality in R with a toy example:
ida,idb
1,2
1,5
2,4
3,2
6,1
2,6
7,2
d<- read.table("D:/data test/snatest.txt", header=F, sep=",")
attach(d)
d
e<-network(d,directed=F,bipartite=7)
plot(e)
d<-as.matri
Hi again,
On Sat, May 28, 2011 at 1:03 PM, Weiwei Shi wrote:
> Actually I have another question relating to this,
>
> I have about 300 nodes (I can reduced them somehow if the network is too
> messy) and the similarity matrix between any two nodes. The size and color
> of nodes have some meanings
Actually I have another question relating to this,
I have about 300 nodes (I can reduced them somehow if the network is too
messy) and the similarity matrix between any two nodes. The size and color
of nodes have some meanings and I tried to use the layout to show their
"distance".
Here is the qu
Thank you, Steve.
Initially I tried to choose b/w cytoscape and pajek, among other bunch of
software. I did not realize the existence of RCytoscape; otherwise, I would
probably use that one.
Weiwei
On Sat, May 28, 2011 at 9:25 AM, Steve Lianoglou <
mailinglist.honey...@gmail.com> wrote:
> Hi,
>
Hi,
On Fri, May 27, 2011 at 5:32 PM, Weiwei Shi wrote:
> Hi there,
>
> I need a network builder and it can change the node size and color; I am not
> sure if network package in R can do this or not. The other functions I
> wanted have been found in that package.
>
> BTW, if there is another packa
Can you be more specific about what a network builder is? and what do you
want exactly?
Your question seems a bit vague.
Best
Ronggui
On 28 May 2011 05:32, Weiwei Shi wrote:
> Hi there,
>
> I need a network builder and it can change the node size and color; I am
> not
> sure if network package
iwei Shi
> To: "r-h...@stat.math.ethz.ch"
> Sent: Fri, May 27, 2011 2:32:23 PM
> Subject: [R] network package in R
>
> Hi there,
>
> I need a network builder and it can change the node size and color; I am not
> sure if network package in R can do this or not.
On May 27, 2011, at 7:08 PM, Weiwei Shi wrote:
> Please read my post carefully.
>
> I did search and found some functions I need for my purpose from
> network package, like layout and its different algorithm. I used
> pajek a couple of days and I found the "IO" part between R and pajek
> a
Please read my post carefully.
I did search and found some functions I need for my purpose from network
package, like layout and its different algorithm. I used pajek a couple of
days and I found the "IO" part between R and pajek a little inconvenient;
that's why I sent the question to find if net
On May 27, 2011, at 5:32 PM, Weiwei Shi wrote:
Hi there,
I need a network builder and it can change the node size and color;
I am not
sure if network package in R can do this or not. The other functions I
wanted have been found in that package.
When I type ??network at my console I get p
Hi there,
I need a network builder and it can change the node size and color; I am not
sure if network package in R can do this or not. The other functions I
wanted have been found in that package.
BTW, if there is another package in R relating to this, please suggest too.
Thanks,
Weiwei
--
W
Dear all,
If you have experience with the -network- package, can you show me how to
remove nodes based on their degrees? For instance, removing all nodes with an
out-degree or in-degree of 1?
Thank you very much for your help!
Rick
__
R-help@r-p
Dear all,
If you have experience with the -network- package, can you show me how to
remove nodes based on their degrees? For instance, removing all nodes with an
out-degree or in-degree of 1?
Thank you very much for your help!
Rick
__
R-help@r-pro
On Wed, Apr 14, 2010 at 07:44:23AM -0800, bchaney wrote:
>
> Does anyone have any thoughts on this? I would really appreciate any
> insights/suggestions that the group could provide.
I did not do sophisticated analyzes, but my opinion is that igraph
is easier to use and more versatile than statne
Does anyone have any thoughts on this? I would really appreciate any
insights/suggestions that the group could provide.
--
View this message in context:
http://n4.nabble.com/Network-Analysis-tp1838902p1839992.html
Sent from the R help mailing list archive at Nabble.com.
Hi,
I am working on a project to understand the linkages between various
websites. My data currently looks like the following:
Variables:
Website
referral_site_1
referral_site_2
...
destination_site_1
destination_site_2
...
The values in these fields are just websites. So for every website in t
Hi Everyone,
I am new to R and just trying my hand at plotting a network from my dataset. I
am trying to teach myself network analysis, so this is probably an easy
question.
Using the package network, I have successfully plotted my network. I simply
want to add labels to my vertices, with th
Hi,
This post might get you started:
http://romainfrancois.blog.free.fr/index.php?post/2009/03/07/What-functions-are-called-by-my-function
> tail( callees( nls ), 20 )
functions
names new.env nls.control nlsModel
812
Dear R-helpers,
does anyone know of some package/function that can build a network from
the functions that are implemented in a package,
i.e. visualize the cross-references from one function to another in the
same or some dependent package?
An example would be a function like 'nls' on top of the
Excellent - now it works. Thank you, Christian!
(I still seem to be unable to replicate the results as reported in the
paper, but that is unrelated to R-help. Thomas, do you have any idea
what I may have entered wrongly?)
Best,
Christian
Christian Ritz wrote:
Hi Christian,
I believe that the
Hi Christian,
I believe that the argument "var" has changed name to "weights".
The following lines work for me:
...
sigma <- rep(sqrt(.5), nrow(lumley1)) # not nrow=
lme1 <- lme(Y1 ~ trt.B + trt.C + trt.D + trt.E, random = ~ 1 | trtpair,
data=lumley1, weights = varConstPower(form=~sigma, fixed
Dear Thomas Lumley, and R-help list members,
I have read your article "Network meta-analysis for indirect treatment
comparisons" (Statist Med, 2002) with great interest. I found it very
helpful that you included the R code to replicate your analysis;
however, I have had a problem replicating your
indexing
> > gdata2
> Vertices: 10
> Edges: 4
> Directed: FALSE
> Edges:
>
> [0] 1 -- 5
> [1] 2 -- 6
> [2] 3 -- 7
> [3] 4 -- 7
> >
> -Original Message-
> From: Gabor Csardi [mailto:[EMAIL PROTECTED]
> Sent: 11 July 2008 14:54
>
2] 3 -- 7
[3] 4 -- 7
>
-Original Message-
From: Gabor Csardi [mailto:[EMAIL PROTECTED]
Sent: 11 July 2008 14:54
To: Dry, Jonathan R
Cc: R Help list
Subject: Re: [R] network
Jonathan,
please stay on the list.
The first query i don't understand, can you send a pdf or explain
a bit
11 July 2008 14:33
> To: Dry, Jonathan R
> Cc: r-help@r-project.org
> Subject: Re: [R] network
>
>
> I'm sure this is possible with 'network', but i'm not very familiar
> with that package. In case you don't get an answer on how
> to do it with network,
I'm sure this is possible with 'network', but i'm not very familiar
with that package. In case you don't get an answer on how
to do it with network, here is how to do it with the 'igraph' package:
library(igraph)
M <- matrix(runif(100)*2-1, 10, 10)
M[ lower.tri(M, diag=TRUE) ] <- 0
M[ abs(M) <
Hello
I am a relatively new user of R and am struggling to use the 'network' package.
I have a correlation matrix (produced using 'cor'), and want to draw a network
where each item showing correlation above a threshold (say 0.5) is joined by a
green line, and each item showing correlation belo
there are several packages that can be used:
the graph, RBGL and Rgraphviz packages, provide data structures,
algorithms, and layout/plotting tools for graphs/networks. There are
quite a few more specialized packages at Bioconductor (typically more
related to biological problems). There, you ca
Johannes,
with the igraph package, this would be something like
library(igraph)
g <- graph.data.frame( data.frame(from=data$acra,
to=data$acrb, weight=data$expab))
Gabor
On Sun, Sep 23, 2007 at 11:39:40AM -0400, Johannes Urpelainen wrote:
> Hi,
>
> I am trying to constr
t. Building a matrix
from acra to acrb with expab as the matrix value (aka "tie strength")
wouldn't be all that crazy.
Depending on which of the R network bits you are choosing to use, and the
size of your data, different strategies are going to be more suitable than
others.
Gener
Hi,
I am trying to construct a social network from a data frame with rows
acra numa acrb numb yearexpab eaboimpab iabo
10 USA2 CAN 20 1957 4017.000 0.0 3187.000 0.0
91 USA2 CUB 40 1957 628.000 0.0 526.000 0.0
144 USA2 HAI 41 1957 25.00
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