Thank you Rui.
With matrix works better. I got plot I have expected to have.
I want to be undirected. But
directed = FALSE
or
as.undirected(graph)
are not working? Where I'd gone wrong?
Shouldn't it be possible to add names instead of numbers of nods with
vertex.label= ?
2012/7/26 Rui Barradas <ruipbarra...@sapo.pt>
> Hello,
>
> I don't see the problem.
>
> given <- scan(text="
>
> 15 2
> 10 4
> 10 4
> 10 4
> 13 4
> 13 4
> 15 4
> 18 4
> 11 5
> 2 6
> 7 6
> 7 6
> 7 6
> 12 6
> 15 6
> 15 6
> 19 6
> 22 6
> 24 6
> 6 7
> 5 12
> 5 12
> 7 12
> 11 12
> 13 12
> 13 12
> 13 12
> 13 12
> 16 12
> 17 12
> 23 12
> 23 12
> 23 12
> 23 12
> 6 13
> 12 13
> 6 14
> 6 15
> 9 15
> 12 15
> 13 15
> 17 16
> 16 17
> 1 18
> 12 18
> 23 18
> 2 19
> 6 19
> 24 19
> 21 22
> 3 25
> 5 26
> 6 27
> 7 27
> 15 29
> 20 30
> 25 31
> 28 31
> 8 32
> 6 33
> 14 33
> 22 34
> ")
> mat <- matrix(given, ncol=2, byrow=TRUE)
>
> g <- graph(given)
> # Or, not run (note the transpose)
> #g <- graph(t(mat))
> # The edges are exactly what is given
> E(g)
>
> V(g)$label <- V(g)
> g$layout <- layout.fruchterman.reingold
> plot(g, edge.arrow.size=0.5, edge.loop.angle=1, edge.curved=FALSE)
>
>
> So my guess is you've messed up the graph creation.
> Also, don't post datasets like that, use dput(), lik this:
>
> dput(given)
> c(15, 2, 10, 4, 10, 4, 10, 4, 13, 4, 13, 4, 15, 4, 18, 4, 11,
> 5, 2, 6, 7, 6, 7, 6, 7, 6, 12, 6, 15, 6, 15, 6, 19, 6, 22, 6,
> 24, 6, 6, 7, 5, 12, 5, 12, 7, 12, 11, 12, 13, 12, 13, 12, 13,
> 12, 13, 12, 16, 12, 17, 12, 23, 12, 23, 12, 23, 12, 23, 12, 6,
> 13, 12, 13, 6, 14, 6, 15, 9, 15, 12, 15, 13, 15, 17, 16, 16,
> 17, 1, 18, 12, 18, 23, 18, 2, 19, 6, 19, 24, 19, 21, 22, 3, 25,
> 5, 26, 6, 27, 7, 27, 15, 29, 20, 30, 25, 31, 28, 31, 8, 32, 6,
> 33, 14, 33, 22, 34)
>
> Now all anyone has to do is to copy that output and paste it into an R
> session.
> (Try it with the matrix to see the result)
>
> Hope this helps,
>
> Rui Barradas
> Em 25-07-2012 16:27, Vlatka Matkovic Puljic escreveu:
>
>> **Hi,
>>
>>
>> I wanted to create a network of drugs that are being studied together.
>> So, I created a file as a graph.
>> But plot of my network is not corect!
>> It looks like to me that something else is lying behind this network links
>> created.
>>
>> Could someone help me with this?
>>
>> Thanx!
>>
>> a<-read.graph(file=file.**choose(), format="edgelist")
>> plot.igraph(a)
>>
>> File (number present ID of drug):
>>
>> 15 2
>> 10 4
>> 10 4
>> 10 4
>> 13 4
>> 13 4
>> 15 4
>> 18 4
>> 11 5
>> 2 6
>> 7 6
>> 7 6
>> 7 6
>> 12 6
>> 15 6
>> 15 6
>> 19 6
>> 22 6
>> 24 6
>> 6 7
>> 5 12
>> 5 12
>> 7 12
>> 11 12
>> 13 12
>> 13 12
>> 13 12
>> 13 12
>> 16 12
>> 17 12
>> 23 12
>> 23 12
>> 23 12
>> 23 12
>> 6 13
>> 12 13
>> 6 14
>> 6 15
>> 9 15
>> 12 15
>> 13 15
>> 17 16
>> 16 17
>> 1 18
>> 12 18
>> 23 18
>> 2 19
>> 6 19
>> 24 19
>> 21 22
>> 3 25
>> 5 26
>> 6 27
>> 7 27
>> 15 29
>> 20 30
>> 25 31
>> 28 31
>> 8 32
>> 6 33
>> 14 33
>> 22 34
>>
>>
>>
>
--
**************************
Vlatka Matkovic Puljic
gsm: +32.474.894953
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