Re: [R] how to normalize a subset of affy data using MAS5 method

2011-11-18 Thread Martin Morgan
On 11/18/2011 02:55 AM, Anup Som wrote: Dear all, I was trying to normalize a subset of affy data those transcribe are either P or M (called pm_filter). I am able to normalize pm_filter subset by using RMA method, however MAS5 is not working. For RMA method, I used the following com

[R] how to normalize a subset of affy data using MAS5 method

2011-11-18 Thread Anup Som
Dear all, I was trying to normalize a subset of affy data those transcribe are either P or M (called pm_filter). I am able to normalize pm_filter subset by using RMA method, however MAS5 is not working. For RMA method, I used the following commend: est<-rma(affydata, subset=pm_filter)